ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 413 |
| AciI | CCGC | 1 cut(s) | 563 |
| AclWI | GGATC | 1 cut(s) | 204 |
| AcoI | YGGCCR | 1 cut(s) | 91 |
| AcsI | RAATTY | 2 cut(s) | 409, 600 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 188, 413 |
| AhlI | ACTAGT | 1 cut(s) | 287 |
| AjnI | CCWGG | 3 cut(s) | 71, 93, 453 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 442, 474 |
| AluBI | AGCT | 6 cut(s) | 7, 169, 541, 554, 569, 595 |
| AluI | AGCT | 6 cut(s) | 7, 169, 541, 554, 569, 595 |
| AlwI | GGATC | 1 cut(s) | 204 |
| AoxI | GGCC | 1 cut(s) | 91 |
| ApeKI | GCWGC | 3 cut(s) | 4, 482, 485 |
| ApoI | RAATTY | 2 cut(s) | 409, 600 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 401, 442 |
| AspS9I | GGNCC | 3 cut(s) | 59, 162, 273 |
| AsuII | TTCGAA | 1 cut(s) | 261 |
| AvaII | GGWCC | 3 cut(s) | 59, 162, 273 |
| BauI | CACGAG | 1 cut(s) | 139 |
| BbvI | GCAGC | 3 cut(s) | 16, 469, 497 |
| BccI | CCATC | 2 cut(s) | 183, 215 |
| BceAI | ACGGC | 1 cut(s) | 106 |
| BciT130I | CCWGG | 3 cut(s) | 73, 95, 455 |
| BcuI | ACTAGT | 1 cut(s) | 287 |
| BfaI | CTAG | 1 cut(s) | 288 |
| BfmI | CTRYAG | 1 cut(s) | 483 |
| BisI | GCNGC | 3 cut(s) | 5, 483, 486 |
| BlsI | GCNGC | 3 cut(s) | 6, 484, 487 |
| Bme1390I | CCNGG | 3 cut(s) | 73, 95, 455 |
| Bme18I | GGWCC | 3 cut(s) | 59, 162, 273 |
| BmgT120I | GGNCC | 3 cut(s) | 59, 162, 273 |
| BmiI | GGNNCC | 4 cut(s) | 164, 243, 452, 520 |
| BmrFI | CCNGG | 3 cut(s) | 73, 95, 455 |
| BmsI | GCATC | 1 cut(s) | 319 |
| Bpu14I | TTCGAA | 1 cut(s) | 261 |
| BsaJI | CCNNGG | 1 cut(s) | 454 |
| BsaWI | WCCGGW | 1 cut(s) | 61 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 188, 413 |
| Bse118I | RCCGGY | 1 cut(s) | 478 |
| BseBI | CCWGG | 3 cut(s) | 73, 95, 455 |
| BseDI | CCNNGG | 1 cut(s) | 454 |
| BseGI | GGATG | 2 cut(s) | 280, 354 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 188, 413 |
| BseXI | GCAGC | 3 cut(s) | 16, 469, 497 |
| BseYI | CCCAGC | 1 cut(s) | 165 |
| BshFI | GGCC | 1 cut(s) | 93 |
| BsiSI | CCGG | 2 cut(s) | 62, 479 |
| BslFI | GGGAC | 2 cut(s) | 148, 189 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 188, 413 |
| BsmFI | GGGAC | 2 cut(s) | 148, 189 |
| BsnI | GGCC | 1 cut(s) | 93 |
| Bsp119I | TTCGAA | 1 cut(s) | 261 |
| Bsp143I | GATC | 3 cut(s) | 43, 196, 305 |
| BspACI | CCGC | 1 cut(s) | 563 |
| BspANI | GGCC | 1 cut(s) | 93 |
| BspLI | GGNNCC | 4 cut(s) | 164, 243, 452, 520 |
| BspMAI | CTGCAG | 1 cut(s) | 487 |
| BspPI | GGATC | 1 cut(s) | 204 |
| BspQI | GCTCTTC | 1 cut(s) | 176 |
| BspT104I | TTCGAA | 1 cut(s) | 261 |
| BsrFI | RCCGGY | 1 cut(s) | 478 |
| BssAI | RCCGGY | 1 cut(s) | 478 |
| BssECI | CCNNGG | 1 cut(s) | 454 |
| BssMI | GATC | 3 cut(s) | 43, 196, 305 |
| BssSI | CACGAG | 1 cut(s) | 139 |
| Bst2BI | CACGAG | 1 cut(s) | 139 |
| Bst2UI | CCWGG | 3 cut(s) | 73, 95, 455 |
| Bst4CI | ACNGT | 1 cut(s) | 368 |
| Bst6I | CTCTTC | 1 cut(s) | 176 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 494 |
| BstBI | TTCGAA | 1 cut(s) | 261 |
| BstC8I | GCNNGC | 1 cut(s) | 480 |
| BstF5I | GGATG | 2 cut(s) | 280, 354 |
| BstKTI | GATC | 3 cut(s) | 46, 199, 308 |
| BstMBI | GATC | 3 cut(s) | 43, 196, 305 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 494, 503, 560 |
| BstNI | CCWGG | 3 cut(s) | 73, 95, 455 |
| BstSCI | CCNGG | 3 cut(s) | 71, 93, 453 |
| BstSFI | CTRYAG | 1 cut(s) | 483 |
| BstV1I | GCAGC | 3 cut(s) | 16, 469, 497 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 214 |
| BsuRI | GGCC | 1 cut(s) | 93 |
| BtsCI | GGATG | 2 cut(s) | 280, 354 |
| BtsI | GCAGTG | 1 cut(s) | 28 |
| BtsIMutI | CAGTG | 2 cut(s) | 28, 364 |
| Cac8I | GCNNGC | 1 cut(s) | 480 |
| Cfr10I | RCCGGY | 1 cut(s) | 478 |
| Cfr13I | GGNCC | 3 cut(s) | 59, 162, 273 |
| CpoI | CGGWCCG | 1 cut(s) | 59 |
| CsiI | ACCWGGT | 1 cut(s) | 71 |
| CspI | CGGWCCG | 1 cut(s) | 59 |
| CviAII | CATG | 1 cut(s) | 447 |
| DpnI | GATC | 3 cut(s) | 45, 198, 307 |
| DpnII | GATC | 3 cut(s) | 43, 196, 305 |
| EaeI | YGGCCR | 1 cut(s) | 91 |
| Eam1104I | CTCTTC | 1 cut(s) | 176 |
| EarI | CTCTTC | 1 cut(s) | 176 |
| Eco47I | GGWCC | 3 cut(s) | 59, 162, 273 |
| EcoRII | CCWGG | 3 cut(s) | 71, 93, 453 |
| FaeI | CATG | 1 cut(s) | 450 |
| FaiI | YATR | 2 cut(s) | 271, 448 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 386, 418 |
| FaqI | GGGAC | 2 cut(s) | 148, 189 |
| FatI | CATG | 1 cut(s) | 446 |
| FauI | CCCGC | 1 cut(s) | 556 |
| Fnu4HI | GCNGC | 3 cut(s) | 5, 483, 486 |
| FokI | GGATG | 2 cut(s) | 267, 361 |
| Fsp4HI | GCNGC | 3 cut(s) | 5, 483, 486 |
| FspBI | CTAG | 1 cut(s) | 288 |
| GluI | GCNGC | 3 cut(s) | 5, 483, 486 |
| GsaI | CCCAGC | 1 cut(s) | 169 |
| HaeIII | GGCC | 1 cut(s) | 93 |
| HapII | CCGG | 2 cut(s) | 62, 479 |
| Hin1II | CATG | 1 cut(s) | 450 |
| HindIII | AAGCTT | 1 cut(s) | 539 |
| HinfI | GANTC | 2 cut(s) | 323, 443 |
| HpaII | CCGG | 2 cut(s) | 62, 479 |
| Hpy166II | GTNNAC | 1 cut(s) | 69 |
| Hpy188I | TCNGA | 4 cut(s) | 43, 196, 305, 328 |
| Hpy188III | TCNNGA | 1 cut(s) | 14 |
| Hpy8I | GTNNAC | 1 cut(s) | 69 |
| HpyAV | CCTTC | 2 cut(s) | 368, 412 |
| HpyCH4III | ACNGT | 1 cut(s) | 368 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 81, 149, 485, 497 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 494, 503, 560 |
| Hsp92II | CATG | 1 cut(s) | 450 |
| KroI | GCCGGC | 1 cut(s) | 478 |
| KroNI | GCCGGC | 1 cut(s) | 480 |
| Kzo9I | GATC | 3 cut(s) | 43, 196, 305 |
| LguI | GCTCTTC | 1 cut(s) | 176 |
| LmnI | GCTCC | 4 cut(s) | 247, 337, 524, 566 |
| Lsp1109I | GCAGC | 3 cut(s) | 16, 469, 497 |
| LweI | GCATC | 1 cut(s) | 319 |
| MabI | ACCWGGT | 1 cut(s) | 71 |
| MaeI | CTAG | 1 cut(s) | 288 |
| MaeIII | GTNAC | 1 cut(s) | 587 |
| MalI | GATC | 3 cut(s) | 45, 198, 307 |
| MboI | GATC | 3 cut(s) | 43, 196, 305 |
| MboII | GAAGA | 2 cut(s) | 163, 406 |
| MfeI | CAATTG | 1 cut(s) | 489 |
| MluCI | AATT | 6 cut(s) | 234, 266, 310, 409, 489, 600 |
| MlyI | GAGTC | 1 cut(s) | 317 |
| MnlI | CCTC | 2 cut(s) | 192, 389 |
| MroNI | GCCGGC | 1 cut(s) | 478 |
| MroXI | GAANNNNTTC | 2 cut(s) | 401, 442 |
| MseI | TTAA | 4 cut(s) | 132, 237, 579, 610 |
| MspI | CCGG | 2 cut(s) | 62, 479 |
| MspR9I | CCNGG | 3 cut(s) | 73, 95, 455 |
| MunI | CAATTG | 1 cut(s) | 489 |
| MvaI | CCWGG | 3 cut(s) | 73, 95, 455 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 494, 503, 560 |
| NaeI | GCCGGC | 1 cut(s) | 480 |
| NdeII | GATC | 3 cut(s) | 43, 196, 305 |
| NgoMIV | GCCGGC | 1 cut(s) | 478 |
| NlaIII | CATG | 1 cut(s) | 450 |
| NlaIV | GGNNCC | 4 cut(s) | 164, 243, 452, 520 |
| NspV | TTCGAA | 1 cut(s) | 261 |
| PciSI | GCTCTTC | 1 cut(s) | 176 |
| PdiI | GCCGGC | 1 cut(s) | 480 |
| PdmI | GAANNNNTTC | 2 cut(s) | 401, 442 |
| PfeI | GAWTC | 1 cut(s) | 443 |
| PflFI | GACNNNGTC | 1 cut(s) | 299 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 413 |
| PkrI | GCNGC | 3 cut(s) | 6, 484, 487 |
| PleI | GAGTC | 1 cut(s) | 317 |
| PpsI | GAGTC | 1 cut(s) | 317 |
| Psp6I | CCWGG | 3 cut(s) | 71, 93, 453 |
| PspFI | CCCAGC | 1 cut(s) | 165 |
| PspGI | CCWGG | 3 cut(s) | 71, 93, 453 |
| PspN4I | GGNNCC | 4 cut(s) | 164, 243, 452, 520 |
| PspPI | GGNCC | 3 cut(s) | 59, 162, 273 |
| PstI | CTGCAG | 1 cut(s) | 487 |
| PsyI | GACNNNGTC | 1 cut(s) | 299 |
| Rsr2I | CGGWCCG | 1 cut(s) | 59 |
| RsrII | CGGWCCG | 1 cut(s) | 59 |
| SapI | GCTCTTC | 1 cut(s) | 176 |
| SaqAI | TTAA | 4 cut(s) | 132, 237, 579, 610 |
| SatI | GCNGC | 3 cut(s) | 5, 483, 486 |
| Sau3AI | GATC | 3 cut(s) | 43, 196, 305 |
| Sau96I | GGNCC | 3 cut(s) | 59, 162, 273 |
| SchI | GAGTC | 1 cut(s) | 317 |
| ScrFI | CCNGG | 3 cut(s) | 73, 95, 455 |
| SexAI | ACCWGGT | 1 cut(s) | 71 |
| SfaNI | GCATC | 1 cut(s) | 319 |
| SfcI | CTRYAG | 1 cut(s) | 483 |
| SfuI | TTCGAA | 1 cut(s) | 261 |
| SinI | GGWCC | 3 cut(s) | 59, 162, 273 |
| SpeI | ACTAGT | 1 cut(s) | 287 |
| Sse9I | AATT | 6 cut(s) | 234, 266, 310, 409, 489, 600 |
| SsiI | CCGC | 1 cut(s) | 563 |
| SspMI | CTAG | 1 cut(s) | 288 |
| StyD4I | CCNGG | 3 cut(s) | 71, 93, 453 |
| TaaI | ACNGT | 1 cut(s) | 368 |
| TaqI | TCGA | 2 cut(s) | 261, 605 |
| TaqII | GACCGA | 1 cut(s) | 150 |
| TasI | AATT | 6 cut(s) | 234, 266, 310, 409, 489, 600 |
| TfiI | GAWTC | 1 cut(s) | 443 |
| Tru1I | TTAA | 4 cut(s) | 132, 237, 579, 610 |
| Tru9I | TTAA | 4 cut(s) | 132, 237, 579, 610 |
| TscAI | CASTG | 2 cut(s) | 35, 371 |
| TseI | GCWGC | 3 cut(s) | 4, 482, 485 |
| TspDTI | ATGAA | 2 cut(s) | 350, 435 |
| TspGWI | ACGGA | 1 cut(s) | 72 |
| TspRI | CASTG | 2 cut(s) | 35, 371 |
| Tth111I | GACNNNGTC | 1 cut(s) | 299 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 413 |
| VpaK11BI | GGWCC | 3 cut(s) | 59, 162, 273 |
| XapI | RAATTY | 2 cut(s) | 409, 600 |
| XmnI | GAANNNNTTC | 2 cut(s) | 401, 442 |
| XspI | CTAG | 1 cut(s) | 288 |