Rmu_sc0008035.1_g000015

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008035.1
OG0000147
Physical Location & Seq
Reverse (-)
37202 .. 38061
860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008035.1_g000015.1.cds

Sequence Viewer

Length: 420 bp
atgacaacagaaagctgtcagaaactagctgtcagaaattctgccgtggaggcttgggatattgacaaccaggaagatcacatggaagttagctttggatatcgcagcccactgaaaagatccagagacatgatggatgatatgcctactgagaatgacaaaagcaaggaggctggtaactttaatattatcgctcacccggctgaaaaaattggaggtaatccttgtaccacaaactacatgttaaactttgttaattttctaaatgacaatagcttaagcactcttccccatttaggaatcccctttacttggatcaacaatcataaggaccacactattatctatgaaaaattagatagagcttgtgcaaatcccaactggattcttcaattccctgaggctgaagtagaaaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

139

Amino Acids

15.93

Weight (kDa)

4.87

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 114, 323
AcsI RAATTY 1 cut(s) 37
AfaI GTAC 1 cut(s) 229
AfiI CCNNNNNNNGG 2 cut(s) 296, 312
AflII CTTAAG 1 cut(s) 277
AflIII ACRYGT 1 cut(s) 240
AgsI TTSAA 1 cut(s) 392
AjnI CCWGG 1 cut(s) 69
AjuI GAANNNNNNNTTGG 2 cut(s) 78, 110
AluBI AGCT 5 cut(s) 15, 29, 93, 276, 365
AluI AGCT 5 cut(s) 15, 29, 93, 276, 365
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 2 cut(s) 114, 323
ApeKI GCWGC 1 cut(s) 105
ApoI RAATTY 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 331
AsuC2I CCSGG 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 188
AvaII GGWCC 1 cut(s) 331
AxyI CCTNAGG 1 cut(s) 399
BbvI GCAGC 1 cut(s) 117
BccI CCATC 1 cut(s) 127
BceAI ACGGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 71
BcnI CCSGG 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 1 cut(s) 26
BfrI CTTAAG 1 cut(s) 277
BglI GCCNNNNNGGC 1 cut(s) 50
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
Bme1390I CCNGG 2 cut(s) 71, 200
Bme18I GGWCC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 331
BmrFI CCNGG 2 cut(s) 71, 200
BpuMI CCSGG 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 45
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 312
Bse1I ACTGG 1 cut(s) 386
Bse21I CCTNAGG 1 cut(s) 399
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 2 cut(s) 296, 312
BseMII CTCAG 2 cut(s) 141, 390
BseNI ACTGG 1 cut(s) 386
BseXI GCAGC 1 cut(s) 117
BsiSI CCGG 1 cut(s) 200
BslI CCNNNNNNNGG 2 cut(s) 296, 312
BsmAI GTCTC 1 cut(s) 120
Bsp143I GATC 3 cut(s) 76, 119, 315
BspCNI CTCAG 2 cut(s) 142, 391
BspPI GGATC 2 cut(s) 114, 323
BspTI CTTAAG 1 cut(s) 277
BsrI ACTGG 1 cut(s) 386
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 3 cut(s) 76, 119, 315
Bst2UI CCWGG 1 cut(s) 71
Bst6I CTCTTC 1 cut(s) 291
BstAFI CTTAAG 1 cut(s) 277
BstDEI CTNAG 2 cut(s) 150, 399
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 3 cut(s) 79, 122, 318
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 3 cut(s) 76, 119, 315
BstMWI GCNNNNNNNGC 2 cut(s) 50, 200
BstNI CCWGG 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 2 cut(s) 69, 198
BstV1I GCAGC 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
Bsu36I CCTNAGG 1 cut(s) 399
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 331
Csp6I GTAC 1 cut(s) 228
CviAII CATG 3 cut(s) 82, 130, 241
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 2 cut(s) 150, 399
DpnI GATC 3 cut(s) 78, 121, 317
DpnII GATC 3 cut(s) 76, 119, 315
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco32I GATATC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 331
Eco81I CCTNAGG 1 cut(s) 399
EcoRII CCWGG 1 cut(s) 69
EcoRV GATATC 1 cut(s) 101
FaeI CATG 3 cut(s) 85, 133, 244
FaiI YATR 6 cut(s) 83, 131, 143, 242, 327, 348
FatI CATG 3 cut(s) 81, 129, 240
Fnu4HI GCNGC 1 cut(s) 106
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 106
FspBI CTAG 1 cut(s) 26
GluI GCNGC 1 cut(s) 106
HapII CCGG 1 cut(s) 200
Hin1II CATG 3 cut(s) 85, 133, 244
HinfI GANTC 2 cut(s) 300, 385
HpaII CCGG 1 cut(s) 200
HphI GGTGA 1 cut(s) 188
Hpy188I TCNGA 2 cut(s) 21, 35
Hpy188III TCNNGA 1 cut(s) 123
HpyCH4V TGCA 1 cut(s) 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 200
HpyF3I CTNAG 2 cut(s) 150, 399
Hsp92II CATG 3 cut(s) 85, 133, 244
Kzo9I GATC 3 cut(s) 76, 119, 315
LpnPI CCDG 7 cut(s) 56, 83, 136, 159, 213, 367, 411
Lsp1109I GCAGC 1 cut(s) 117
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 176
MalI GATC 3 cut(s) 78, 121, 317
MboI GATC 3 cut(s) 76, 119, 315
MboII GAAGA 3 cut(s) 86, 278, 380
MflI RGATCY 1 cut(s) 119
MluCI AATT 6 cut(s) 37, 210, 256, 353, 392, 415
MnlI CCTC 4 cut(s) 43, 163, 209, 394
MseI TTAA 4 cut(s) 183, 245, 255, 278
MspCI CTTAAG 1 cut(s) 277
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 2 cut(s) 71, 200
MvaI CCWGG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 50, 200
NciI CCSGG 1 cut(s) 200
NdeII GATC 3 cut(s) 76, 119, 315
NlaIII CATG 3 cut(s) 85, 133, 244
NspI RCATGY 1 cut(s) 244
PciI ACATGT 1 cut(s) 240
PfeI GAWTC 2 cut(s) 300, 385
PkrI GCNGC 1 cut(s) 107
PscI ACATGT 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspPI GGNCC 1 cut(s) 331
PsuI RGATCY 1 cut(s) 119
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
SaqAI TTAA 4 cut(s) 183, 245, 255, 278
SatI GCNGC 1 cut(s) 106
Sau3AI GATC 3 cut(s) 76, 119, 315
Sau96I GGNCC 1 cut(s) 331
ScrFI CCNGG 2 cut(s) 71, 200
SetI ASST 6 cut(s) 17, 31, 95, 220, 278, 367
SinI GGWCC 1 cut(s) 331
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
Sse9I AATT 6 cut(s) 37, 210, 256, 353, 392, 415
SspI AATATT 1 cut(s) 187
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 2 cut(s) 69, 198
TasI AATT 6 cut(s) 37, 210, 256, 353, 392, 415
TfiI GAWTC 2 cut(s) 300, 385
Tru1I TTAA 4 cut(s) 183, 245, 255, 278
Tru9I TTAA 4 cut(s) 183, 245, 255, 278
TscAI CASTG 1 cut(s) 117
TseI GCWGC 1 cut(s) 105
TspDTI ATGAA 1 cut(s) 363
TspRI CASTG 1 cut(s) 117
Vha464I CTTAAG 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 331
XapI RAATTY 1 cut(s) 37
XceI RCATGY 1 cut(s) 244
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.