ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Auxin_inducible | PF02519 | 15 - 140 | 1.1e-26 | Auxin responsive protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 231 |
| AccII | CGCG | 1 cut(s) | 212 |
| AciI | CCGC | 4 cut(s) | 99, 210, 212, 365 |
| AcyI | GRCGYC | 1 cut(s) | 228 |
| AfaI | GTAC | 1 cut(s) | 299 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 364 |
| AgsI | TTSAA | 3 cut(s) | 415, 425, 466 |
| AluBI | AGCT | 2 cut(s) | 73, 517 |
| AluI | AGCT | 2 cut(s) | 73, 517 |
| Alw21I | GWGCWC | 1 cut(s) | 375 |
| Alw26I | GTCTC | 1 cut(s) | 211 |
| AoxI | GGCC | 1 cut(s) | 304 |
| ApeKI | GCWGC | 2 cut(s) | 150, 159 |
| AspS9I | GGNCC | 1 cut(s) | 304 |
| AsuC2I | CCSGG | 1 cut(s) | 332 |
| AsuNHI | GCTAGC | 1 cut(s) | 73 |
| BbsI | GAAGAC | 1 cut(s) | 433 |
| Bbv12I | GWGCWC | 1 cut(s) | 375 |
| BbvI | GCAGC | 2 cut(s) | 162, 171 |
| BccI | CCATC | 2 cut(s) | 131, 511 |
| BcnI | CCSGG | 1 cut(s) | 332 |
| BcoDI | GTCTC | 1 cut(s) | 211 |
| BfaI | CTAG | 1 cut(s) | 74 |
| BglII | AGATCT | 1 cut(s) | 408 |
| BisI | GCNGC | 3 cut(s) | 151, 160, 213 |
| BlsI | GCNGC | 3 cut(s) | 152, 161, 214 |
| BmcAI | AGTACT | 1 cut(s) | 299 |
| Bme1390I | CCNGG | 1 cut(s) | 332 |
| BmgT120I | GGNCC | 1 cut(s) | 304 |
| BmiI | GGNNCC | 1 cut(s) | 44 |
| BmrFI | CCNGG | 1 cut(s) | 332 |
| BmsI | GCATC | 1 cut(s) | 177 |
| BmtI | GCTAGC | 1 cut(s) | 77 |
| BpiI | GAAGAC | 1 cut(s) | 433 |
| BpuEI | CTTGAG | 4 cut(s) | 41, 164, 257, 359 |
| BpuMI | CCSGG | 1 cut(s) | 332 |
| BsaHI | GRCGYC | 1 cut(s) | 228 |
| BsaJI | CCNNGG | 2 cut(s) | 210, 339 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 127, 157 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 364 |
| Bse3DI | GCAATG | 1 cut(s) | 160 |
| BseDI | CCNNGG | 2 cut(s) | 210, 339 |
| BseGI | GGATG | 2 cut(s) | 285, 532 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 364 |
| BseMI | GCAATG | 1 cut(s) | 160 |
| BseRI | GAGGAG | 2 cut(s) | 356, 359 |
| BseXI | GCAGC | 2 cut(s) | 162, 171 |
| Bsh1236I | CGCG | 1 cut(s) | 212 |
| BshFI | GGCC | 1 cut(s) | 306 |
| BsiHKAI | GWGCWC | 1 cut(s) | 375 |
| BsiSI | CCGG | 1 cut(s) | 331 |
| BslFI | GGGAC | 1 cut(s) | 218 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 364 |
| BsmAI | GTCTC | 1 cut(s) | 211 |
| BsmFI | GGGAC | 1 cut(s) | 218 |
| BsnI | GGCC | 1 cut(s) | 306 |
| Bsp1286I | GDGCHC | 1 cut(s) | 375 |
| Bsp143I | GATC | 2 cut(s) | 24, 408 |
| BspACI | CCGC | 4 cut(s) | 99, 210, 212, 365 |
| BspANI | GGCC | 1 cut(s) | 306 |
| BspFNI | CGCG | 1 cut(s) | 212 |
| BspLI | GGNNCC | 1 cut(s) | 44 |
| BspOI | GCTAGC | 1 cut(s) | 77 |
| BsrDI | GCAATG | 1 cut(s) | 160 |
| BssECI | CCNNGG | 2 cut(s) | 210, 339 |
| BssMI | GATC | 2 cut(s) | 24, 408 |
| BssNI | GRCGYC | 1 cut(s) | 228 |
| Bst4CI | ACNGT | 1 cut(s) | 192 |
| Bst6I | CTCTTC | 1 cut(s) | 420 |
| BstACI | GRCGYC | 1 cut(s) | 228 |
| BstC8I | GCNNGC | 3 cut(s) | 75, 133, 363 |
| BstDEI | CTNAG | 1 cut(s) | 87 |
| BstDSI | CCRYGG | 1 cut(s) | 210 |
| BstF5I | GGATG | 2 cut(s) | 285, 532 |
| BstFNI | CGCG | 1 cut(s) | 212 |
| BstKTI | GATC | 2 cut(s) | 27, 411 |
| BstMAI | GTCTC | 1 cut(s) | 211 |
| BstMBI | GATC | 2 cut(s) | 24, 408 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 156, 159, 165 |
| BstSCI | CCNGG | 1 cut(s) | 330 |
| BstUI | CGCG | 1 cut(s) | 212 |
| BstV1I | GCAGC | 2 cut(s) | 162, 171 |
| BstV2I | GAAGAC | 1 cut(s) | 433 |
| BstX2I | RGATCY | 1 cut(s) | 408 |
| BstYI | RGATCY | 1 cut(s) | 408 |
| BsuRI | GGCC | 1 cut(s) | 306 |
| BtgI | CCRYGG | 1 cut(s) | 210 |
| BtsCI | GGATG | 2 cut(s) | 285, 532 |
| BtsIMutI | CAGTG | 2 cut(s) | 188, 402 |
| Cac8I | GCNNGC | 3 cut(s) | 75, 133, 363 |
| Cfr13I | GGNCC | 1 cut(s) | 304 |
| Cfr42I | CCGCGG | 1 cut(s) | 213 |
| Csp6I | GTAC | 1 cut(s) | 298 |
| CviAII | CATG | 3 cut(s) | 384, 452, 481 |
| CviJI | RGCY | 7 cut(s) | 43, 73, 131, 215, 306, 338, 517 |
| CviKI_1 | RGCY | 7 cut(s) | 43, 73, 131, 215, 306, 338, 517 |
| CviQI | GTAC | 1 cut(s) | 298 |
| DdeI | CTNAG | 1 cut(s) | 87 |
| DpnI | GATC | 2 cut(s) | 26, 410 |
| DpnII | GATC | 2 cut(s) | 24, 408 |
| Eam1104I | CTCTTC | 1 cut(s) | 420 |
| EarI | CTCTTC | 1 cut(s) | 420 |
| FaeI | CATG | 3 cut(s) | 387, 455, 484 |
| FaiI | YATR | 3 cut(s) | 385, 453, 482 |
| FaqI | GGGAC | 1 cut(s) | 218 |
| FatI | CATG | 3 cut(s) | 383, 451, 480 |
| FauI | CCCGC | 1 cut(s) | 358 |
| Fnu4HI | GCNGC | 3 cut(s) | 151, 160, 213 |
| FokI | GGATG | 2 cut(s) | 272, 519 |
| Fsp4HI | GCNGC | 3 cut(s) | 151, 160, 213 |
| FspBI | CTAG | 1 cut(s) | 74 |
| GluI | GCNGC | 3 cut(s) | 151, 160, 213 |
| HaeIII | GGCC | 1 cut(s) | 306 |
| HapII | CCGG | 1 cut(s) | 331 |
| Hin1I | GRCGYC | 1 cut(s) | 228 |
| Hin1II | CATG | 3 cut(s) | 387, 455, 484 |
| HinfI | GANTC | 5 cut(s) | 5, 322, 354, 379, 462 |
| HpaII | CCGG | 1 cut(s) | 331 |
| Hpy188I | TCNGA | 5 cut(s) | 29, 222, 321, 353, 508 |
| Hpy188III | TCNNGA | 5 cut(s) | 58, 181, 274, 376, 412 |
| Hpy99I | CGWCG | 2 cut(s) | 230, 233 |
| HpyAV | CCTTC | 4 cut(s) | 205, 259, 409, 534 |
| HpyCH4III | ACNGT | 1 cut(s) | 192 |
| HpyCH4IV | ACGT | 1 cut(s) | 228 |
| HpyCH4V | TGCA | 2 cut(s) | 451, 470 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 156, 159, 165 |
| HpyF3I | CTNAG | 1 cut(s) | 87 |
| HpySE526I | ACGT | 1 cut(s) | 228 |
| Hsp92I | GRCGYC | 1 cut(s) | 228 |
| Hsp92II | CATG | 3 cut(s) | 387, 455, 484 |
| KspI | CCGCGG | 1 cut(s) | 213 |
| Kzo9I | GATC | 2 cut(s) | 24, 408 |
| LmnI | GCTCC | 2 cut(s) | 48, 333 |
| LpnPI | CCDG | 3 cut(s) | 145, 344, 371 |
| Lsp1109I | GCAGC | 2 cut(s) | 162, 171 |
| LweI | GCATC | 1 cut(s) | 177 |
| MaeI | CTAG | 1 cut(s) | 74 |
| MaeII | ACGT | 1 cut(s) | 228 |
| MalI | GATC | 2 cut(s) | 26, 410 |
| MboI | GATC | 2 cut(s) | 24, 408 |
| MboII | GAAGA | 4 cut(s) | 418, 433, 436, 437 |
| MflI | RGATCY | 1 cut(s) | 408 |
| MhlI | GDGCHC | 1 cut(s) | 375 |
| MluCI | AATT | 1 cut(s) | 109 |
| MmeI | TCCRAC | 1 cut(s) | 70 |
| MnlI | CCTC | 7 cut(s) | 65, 158, 188, 270, 334, 337, 382 |
| MspA1I | CMGCKG | 1 cut(s) | 212 |
| MspI | CCGG | 1 cut(s) | 331 |
| MspR9I | CCNGG | 1 cut(s) | 332 |
| MvnI | CGCG | 1 cut(s) | 212 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 156, 159, 165 |
| NciI | CCSGG | 1 cut(s) | 332 |
| NdeII | GATC | 2 cut(s) | 24, 408 |
| NheI | GCTAGC | 1 cut(s) | 73 |
| NlaIII | CATG | 3 cut(s) | 387, 455, 484 |
| NlaIV | GGNNCC | 1 cut(s) | 44 |
| NmeAIII | GCCGAG | 1 cut(s) | 364 |
| PfeI | GAWTC | 5 cut(s) | 5, 322, 354, 379, 462 |
| PflFI | GACNNNGTC | 1 cut(s) | 230 |
| PfoI | TCCNGGA | 1 cut(s) | 330 |
| PkrI | GCNGC | 3 cut(s) | 152, 161, 214 |
| PspN4I | GGNNCC | 1 cut(s) | 44 |
| PspPI | GGNCC | 1 cut(s) | 304 |
| PsuI | RGATCY | 1 cut(s) | 408 |
| PsyI | GACNNNGTC | 1 cut(s) | 230 |
| RsaI | GTAC | 1 cut(s) | 299 |
| RsaNI | GTAC | 1 cut(s) | 298 |
| SacII | CCGCGG | 1 cut(s) | 213 |
| SatI | GCNGC | 3 cut(s) | 151, 160, 213 |
| Sau3AI | GATC | 2 cut(s) | 24, 408 |
| Sau96I | GGNCC | 1 cut(s) | 304 |
| ScaI | AGTACT | 1 cut(s) | 299 |
| ScrFI | CCNGG | 1 cut(s) | 332 |
| SduI | GDGCHC | 1 cut(s) | 375 |
| SetI | ASST | 8 cut(s) | 75, 231, 281, 393, 420, 519, 526, 551 |
| SfaNI | GCATC | 1 cut(s) | 177 |
| Sfr303I | CCGCGG | 1 cut(s) | 213 |
| SgrBI | CCGCGG | 1 cut(s) | 213 |
| SmlI | CTYRAG | 4 cut(s) | 56, 179, 272, 374 |
| SmoI | CTYRAG | 4 cut(s) | 56, 179, 272, 374 |
| Sse9I | AATT | 1 cut(s) | 109 |
| SsiI | CCGC | 4 cut(s) | 99, 210, 212, 365 |
| SspMI | CTAG | 1 cut(s) | 74 |
| StyD4I | CCNGG | 1 cut(s) | 330 |
| TaaI | ACNGT | 1 cut(s) | 192 |
| TaiI | ACGT | 1 cut(s) | 231 |
| TasI | AATT | 1 cut(s) | 109 |
| TatI | WGTACW | 1 cut(s) | 297 |
| TauI | GCSGC | 1 cut(s) | 215 |
| TfiI | GAWTC | 5 cut(s) | 5, 322, 354, 379, 462 |
| TscAI | CASTG | 2 cut(s) | 195, 402 |
| TseI | GCWGC | 2 cut(s) | 150, 159 |
| TspDTI | ATGAA | 1 cut(s) | 102 |
| TspRI | CASTG | 2 cut(s) | 195, 402 |
| Tth111I | GACNNNGTC | 1 cut(s) | 230 |
| XspI | CTAG | 1 cut(s) | 74 |
| ZraI | GACGTC | 1 cut(s) | 229 |
| ZrmI | AGTACT | 1 cut(s) | 299 |