Rmu_sc0004988.1_g000019

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004988.1
OG0000147
Physical Location & Seq
Reverse (-)
55319 .. 56101
783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004988.1_g000019.1.cds

Sequence Viewer

Length: 783 bp
atgtacacttggatgtatggtcccccttattattctgaaaaagtggaattttggaactactggaactcacaaggctgtgataactctatcccttggctgattatgggagatttaaatgagttgttatgtcagtatgaagtggagggtagtgcttcttggagtcctaatcgcaagcaatttctatgtgccttcatgaattctaatttactcctggatattgactacaaaggtcagagatttacatgggctaggaaggtggaaggagttattgttcttcaagaacgtcttgatcggtgtttagtaaacgaaagttggattcttaaatggctgaattcttgcttatctcatctcactagaaatgggtcagaccattacccaatctttctaattactaatccaagattaagcatgcatatacccacattcaagtttgaagcattttgggcagatgaggctgatgcaaagtctctaattgaggagagctggaattcggatccttgtcttccatcactcactcagtggtcactgaatctaaacaagtgtcgagtgaacctgagaagatggagcagaagtaaattccccaagtgtaataaagaggagatcaaattgtgtctgatggaattagaggagctccagattcaatctccctttgatagctcagagaaacagttggaactcaccacaaaattgggctcgctttggctaagggaagaaaatttttggcaccagcgatccagagtcaattggttaaaaactggagatacaaactccagatttttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

260

Amino Acids

31.03

Weight (kDa)

6.14

Isoelectric Point (pI)

57.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 723
AclWI GGATC 3 cut(s) 488, 501, 726
AcsI RAATTY 6 cut(s) 47, 196, 331, 487, 575, 715
AdeI CACNNNGTG 1 cut(s) 519
AfaI GTAC 1 cut(s) 5
AgsI TTSAA 4 cut(s) 278, 427, 434, 641
AjnI CCWGG 1 cut(s) 210
AloI GAACNNNNNNTCC 2 cut(s) 255, 287
AluBI AGCT 3 cut(s) 483, 631, 657
AluI AGCT 3 cut(s) 483, 631, 657
Alw21I GWGCWC 1 cut(s) 633
Alw26I GTCTC 1 cut(s) 471
AlwI GGATC 3 cut(s) 488, 501, 726
ApoI RAATTY 6 cut(s) 47, 196, 331, 487, 575, 715
AspS9I GGNCC 1 cut(s) 20
AsuHPI GGTGA 1 cut(s) 670
AvaII GGWCC 1 cut(s) 20
BamHI GGATCC 1 cut(s) 493
BanI GGYRCC 1 cut(s) 723
BanII GRGCYC 2 cut(s) 633, 695
BbsI GAAGAC 1 cut(s) 494
Bbv12I GWGCWC 1 cut(s) 633
BccI CCATC 3 cut(s) 514, 555, 610
BciT130I CCWGG 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 471
BfaI CTAG 2 cut(s) 249, 354
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 3 cut(s) 22, 495, 725
BmrFI CCNGG 1 cut(s) 212
BmsI GCATC 1 cut(s) 448
BpiI GAAGAC 1 cut(s) 494
BpmI CTGGAG 3 cut(s) 617, 754, 777
Bpu10I CCTNAGC 1 cut(s) 704
BsaJI CCNNGG 1 cut(s) 92
BsaXI ACNNNNNCTCC 4 cut(s) 255, 285, 556, 586
Bse1I ACTGG 2 cut(s) 65, 760
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 92
BseGI GGATG 1 cut(s) 18
BseMII CTCAG 3 cut(s) 530, 545, 672
BseNI ACTGG 2 cut(s) 65, 760
BseRI GAGGAG 3 cut(s) 491, 611, 641
BshNI GGYRCC 1 cut(s) 723
BsiHKAI GWGCWC 1 cut(s) 633
BslFI GGGAC 1 cut(s) 6
BsmAI GTCTC 1 cut(s) 471
BsmFI GGGAC 1 cut(s) 6
Bsp1286I GDGCHC 2 cut(s) 633, 695
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 4 cut(s) 289, 493, 600, 731
BspCNI CTCAG 3 cut(s) 529, 546, 671
BspHI TCATGA 1 cut(s) 192
BspLI GGNNCC 3 cut(s) 22, 495, 725
BspPI GGATC 3 cut(s) 488, 501, 726
BspT107I GGYRCC 1 cut(s) 723
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 65, 760
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 4 cut(s) 289, 493, 600, 731
BssT1I CCWWGG 1 cut(s) 92
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 669
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 3 cut(s) 173, 410, 695
BstDEI CTNAG 4 cut(s) 516, 554, 658, 704
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 4 cut(s) 292, 496, 603, 734
BstMAI GTCTC 1 cut(s) 471
BstMBI GATC 4 cut(s) 289, 493, 600, 731
BstMWI GCNNNNNNNGC 2 cut(s) 443, 452
BstNI CCWGG 1 cut(s) 212
BstNSI RCATGY 1 cut(s) 412
BstSCI CCNGG 1 cut(s) 210
BstV2I GAAGAC 1 cut(s) 494
BstX2I RGATCY 1 cut(s) 493
BstXI CCANNNNNNTGG 1 cut(s) 688
BstYI RGATCY 1 cut(s) 493
BtsCI GGATG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 524, 524
Cac8I GCNNGC 3 cut(s) 173, 410, 695
CciI TCATGA 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 4
CviAII CATG 3 cut(s) 193, 243, 409
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 4 cut(s) 516, 554, 658, 704
DpnI GATC 4 cut(s) 291, 495, 602, 733
DpnII GATC 4 cut(s) 289, 493, 600, 731
DraI TTTAAA 1 cut(s) 114
DraIII CACNNNGTG 1 cut(s) 519
Ecl136II GAGCTC 1 cut(s) 631
Eco130I CCWWGG 1 cut(s) 92
Eco24I GRGCYC 2 cut(s) 633, 695
Eco47I GGWCC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 631
EcoICRI GAGCTC 1 cut(s) 631
EcoRI GAATTC 3 cut(s) 196, 331, 487
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 92
EcoT22I ATGCAT 1 cut(s) 414
EcoT38I GRGCYC 2 cut(s) 633, 695
ErhI CCWWGG 1 cut(s) 92
FaeI CATG 3 cut(s) 196, 246, 412
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FaqI GGGAC 1 cut(s) 6
FatI CATG 3 cut(s) 192, 242, 408
FokI GGATG 1 cut(s) 25
FriOI GRGCYC 2 cut(s) 633, 695
FspBI CTAG 2 cut(s) 249, 354
GsuI CTGGAG 3 cut(s) 617, 754, 777
Hin1II CATG 3 cut(s) 196, 246, 412
HinfI GANTC 5 cut(s) 160, 316, 529, 637, 738
HphI GGTGA 1 cut(s) 670
Hpy166II GTNNAC 3 cut(s) 6, 304, 550
Hpy188I TCNGA 6 cut(s) 37, 234, 367, 493, 615, 661
Hpy188III TCNNGA 6 cut(s) 193, 278, 287, 634, 735, 771
Hpy8I GTNNAC 3 cut(s) 6, 304, 550
HpyAV CCTTC 3 cut(s) 199, 247, 254
HpyCH4III ACNGT 1 cut(s) 669
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 2 cut(s) 412, 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 443, 452
HpyF3I CTNAG 4 cut(s) 516, 554, 658, 704
HpySE526I ACGT 1 cut(s) 283
Hsp92II CATG 3 cut(s) 196, 246, 412
Kzo9I GATC 4 cut(s) 289, 493, 600, 731
LmnI GCTCC 3 cut(s) 564, 628, 636
LpnPI CCDG 9 cut(s) 46, 197, 224, 469, 566, 647, 740, 741, 748
LweI GCATC 1 cut(s) 448
MaeI CTAG 2 cut(s) 249, 354
MaeII ACGT 1 cut(s) 283
MaeIII GTNAC 1 cut(s) 522
MalI GATC 4 cut(s) 291, 495, 602, 733
MboI GATC 4 cut(s) 289, 493, 600, 731
MboII GAAGA 4 cut(s) 266, 494, 570, 722
MfeI CAATTG 1 cut(s) 742
MflI RGATCY 1 cut(s) 493
MhlI GDGCHC 2 cut(s) 633, 695
MlyI GAGTC 2 cut(s) 169, 747
MmeI TCCRAC 2 cut(s) 293, 651
MnlI CCTC 5 cut(s) 136, 445, 469, 589, 619
Mph1103I ATGCAT 1 cut(s) 414
MseI TTAA 4 cut(s) 113, 321, 404, 749
MslI CAYNNNNRTG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 212
MunI CAATTG 1 cut(s) 742
MvaI CCWGG 1 cut(s) 212
MwoI GCNNNNNNNGC 2 cut(s) 443, 452
NdeII GATC 4 cut(s) 289, 493, 600, 731
NlaIII CATG 3 cut(s) 196, 246, 412
NlaIV GGNNCC 3 cut(s) 22, 495, 725
NmuCI GTSAC 1 cut(s) 522
NsiI ATGCAT 1 cut(s) 414
NspI RCATGY 1 cut(s) 412
PaeI GCATGC 1 cut(s) 412
PagI TCATGA 1 cut(s) 192
PfeI GAWTC 3 cut(s) 316, 529, 637
PfoI TCCNGGA 1 cut(s) 210
PleI GAGTC 2 cut(s) 168, 746
PpsI GAGTC 2 cut(s) 168, 746
Psp124BI GAGCTC 1 cut(s) 633
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 3 cut(s) 22, 495, 725
PspPI GGNCC 1 cut(s) 20
PsuI RGATCY 1 cut(s) 493
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 11
SacI GAGCTC 1 cut(s) 633
SaqAI TTAA 4 cut(s) 113, 321, 404, 749
Sau3AI GATC 4 cut(s) 289, 493, 600, 731
Sau96I GGNCC 1 cut(s) 20
SchI GAGTC 2 cut(s) 169, 747
ScrFI CCNGG 1 cut(s) 212
SduI GDGCHC 2 cut(s) 633, 695
SetI ASST 7 cut(s) 232, 258, 286, 485, 555, 633, 659
SfaNI GCATC 1 cut(s) 448
SinI GGWCC 1 cut(s) 20
SmiI ATTTAAAT 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 11
SphI GCATGC 1 cut(s) 412
SspMI CTAG 2 cut(s) 249, 354
SstI GAGCTC 1 cut(s) 633
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 92
SwaI ATTTAAAT 1 cut(s) 114
TaaI ACNGT 1 cut(s) 669
TaiI ACGT 1 cut(s) 286
TaqI TCGA 1 cut(s) 544
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 3 cut(s) 316, 529, 637
Tru1I TTAA 4 cut(s) 113, 321, 404, 749
Tru9I TTAA 4 cut(s) 113, 321, 404, 749
TscAI CASTG 2 cut(s) 524, 531
TseFI GTSAC 1 cut(s) 522
Tsp45I GTSAC 1 cut(s) 522
TspDTI ATGAA 3 cut(s) 150, 181, 209
TspRI CASTG 2 cut(s) 524, 531
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 6 cut(s) 47, 196, 331, 487, 575, 715
XceI RCATGY 1 cut(s) 412
XspI CTAG 2 cut(s) 249, 354
Zsp2I ATGCAT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.