ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 4 - 155 | 2.3e-10 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 198 |
| AclWI | GGATC | 1 cut(s) | 85 |
| AcsI | RAATTY | 2 cut(s) | 423, 539 |
| AcuI | CTGAAG | 1 cut(s) | 173 |
| AfaI | GTAC | 4 cut(s) | 9, 190, 228, 368 |
| AflIII | ACRYGT | 1 cut(s) | 110 |
| AgsI | TTSAA | 1 cut(s) | 61 |
| AjnI | CCWGG | 1 cut(s) | 395 |
| AluBI | AGCT | 2 cut(s) | 56, 350 |
| AluI | AGCT | 2 cut(s) | 56, 350 |
| Alw26I | GTCTC | 2 cut(s) | 101, 447 |
| AlwI | GGATC | 1 cut(s) | 85 |
| AoxI | GGCC | 1 cut(s) | 533 |
| ApoI | RAATTY | 2 cut(s) | 423, 539 |
| AspS9I | GGNCC | 2 cut(s) | 36, 533 |
| AvaII | GGWCC | 1 cut(s) | 36 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 258, 291 |
| BbsI | GAAGAC | 2 cut(s) | 151, 511 |
| BciT130I | CCWGG | 1 cut(s) | 397 |
| BciVI | GTATCC | 1 cut(s) | 118 |
| BcoDI | GTCTC | 2 cut(s) | 101, 447 |
| BfaI | CTAG | 1 cut(s) | 119 |
| BfmI | CTRYAG | 1 cut(s) | 70 |
| BfuI | GTATCC | 1 cut(s) | 118 |
| Bme1390I | CCNGG | 1 cut(s) | 397 |
| Bme18I | GGWCC | 1 cut(s) | 36 |
| BmgT120I | GGNCC | 2 cut(s) | 36, 533 |
| BmiI | GGNNCC | 1 cut(s) | 37 |
| BmrFI | CCNGG | 1 cut(s) | 397 |
| BoxI | GACNNNNGTC | 1 cut(s) | 34 |
| BpiI | GAAGAC | 2 cut(s) | 151, 511 |
| BpmI | CTGGAG | 2 cut(s) | 160, 213 |
| BsaJI | CCNNGG | 1 cut(s) | 395 |
| Bse1I | ACTGG | 2 cut(s) | 143, 196 |
| BseBI | CCWGG | 1 cut(s) | 397 |
| BseDI | CCNNGG | 1 cut(s) | 395 |
| BseGI | GGATG | 1 cut(s) | 321 |
| BseMII | CTCAG | 1 cut(s) | 78 |
| BseNI | ACTGG | 2 cut(s) | 143, 196 |
| BseRI | GAGGAG | 1 cut(s) | 465 |
| BshFI | GGCC | 1 cut(s) | 535 |
| BslFI | GGGAC | 1 cut(s) | 42 |
| BsmAI | GTCTC | 2 cut(s) | 101, 447 |
| BsmFI | GGGAC | 1 cut(s) | 42 |
| BsnI | GGCC | 1 cut(s) | 535 |
| Bsp1407I | TGTACA | 1 cut(s) | 226 |
| Bsp143I | GATC | 2 cut(s) | 90, 517 |
| BspACI | CCGC | 1 cut(s) | 198 |
| BspANI | GGCC | 1 cut(s) | 535 |
| BspCNI | CTCAG | 1 cut(s) | 79 |
| BspLI | GGNNCC | 1 cut(s) | 37 |
| BspMAI | CTGCAG | 1 cut(s) | 74 |
| BspPI | GGATC | 1 cut(s) | 85 |
| BsrGI | TGTACA | 1 cut(s) | 226 |
| BsrI | ACTGG | 2 cut(s) | 143, 196 |
| BssECI | CCNNGG | 1 cut(s) | 395 |
| BssMI | GATC | 2 cut(s) | 90, 517 |
| Bst2UI | CCWGG | 1 cut(s) | 397 |
| Bst4CI | ACNGT | 4 cut(s) | 23, 238, 274, 458 |
| BstAUI | TGTACA | 1 cut(s) | 226 |
| BstDEI | CTNAG | 2 cut(s) | 87, 546 |
| BstF5I | GGATG | 1 cut(s) | 321 |
| BstKTI | GATC | 2 cut(s) | 93, 520 |
| BstMAI | GTCTC | 2 cut(s) | 101, 447 |
| BstMBI | GATC | 2 cut(s) | 90, 517 |
| BstNI | CCWGG | 1 cut(s) | 397 |
| BstNSI | RCATGY | 1 cut(s) | 114 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 34 |
| BstSCI | CCNGG | 1 cut(s) | 395 |
| BstSFI | CTRYAG | 1 cut(s) | 70 |
| BstV2I | GAAGAC | 2 cut(s) | 151, 511 |
| BstX2I | RGATCY | 1 cut(s) | 90 |
| BstYI | RGATCY | 1 cut(s) | 90 |
| BsuI | GTATCC | 1 cut(s) | 118 |
| BsuRI | GGCC | 1 cut(s) | 535 |
| BtsCI | GGATG | 1 cut(s) | 321 |
| Cfr13I | GGNCC | 2 cut(s) | 36, 533 |
| Csp6I | GTAC | 4 cut(s) | 8, 189, 227, 367 |
| CviAII | CATG | 3 cut(s) | 111, 312, 332 |
| CviJI | RGCY | 4 cut(s) | 56, 206, 350, 535 |
| CviKI_1 | RGCY | 4 cut(s) | 56, 206, 350, 535 |
| CviQI | GTAC | 4 cut(s) | 8, 189, 227, 367 |
| DdeI | CTNAG | 2 cut(s) | 87, 546 |
| DpnI | GATC | 2 cut(s) | 92, 519 |
| DpnII | GATC | 2 cut(s) | 90, 517 |
| Eco47I | GGWCC | 1 cut(s) | 36 |
| Eco57I | CTGAAG | 1 cut(s) | 173 |
| EcoO109I | RGGNCCY | 1 cut(s) | 36 |
| EcoRII | CCWGG | 1 cut(s) | 395 |
| FaeI | CATG | 3 cut(s) | 114, 315, 335 |
| FaiI | YATR | 9 cut(s) | 104, 112, 261, 263, 288, 313, 321, 333, 409 |
| FaqI | GGGAC | 1 cut(s) | 42 |
| FatI | CATG | 3 cut(s) | 110, 311, 331 |
| FauI | CCCGC | 1 cut(s) | 191 |
| FokI | GGATG | 1 cut(s) | 328 |
| FspBI | CTAG | 1 cut(s) | 119 |
| GsuI | CTGGAG | 2 cut(s) | 160, 213 |
| HaeIII | GGCC | 1 cut(s) | 535 |
| Hin1II | CATG | 3 cut(s) | 114, 315, 335 |
| HincII | GTYRAC | 2 cut(s) | 116, 178 |
| HindII | GTYRAC | 2 cut(s) | 116, 178 |
| HindIII | AAGCTT | 1 cut(s) | 54 |
| HinfI | GANTC | 6 cut(s) | 64, 184, 221, 245, 250, 382 |
| Hpy166II | GTNNAC | 2 cut(s) | 116, 178 |
| Hpy188I | TCNGA | 3 cut(s) | 153, 163, 439 |
| Hpy188III | TCNNGA | 1 cut(s) | 86 |
| Hpy8I | GTNNAC | 2 cut(s) | 116, 178 |
| HpyAV | CCTTC | 1 cut(s) | 284 |
| HpyCH4III | ACNGT | 4 cut(s) | 23, 238, 274, 458 |
| HpyCH4V | TGCA | 2 cut(s) | 72, 303 |
| HpyF3I | CTNAG | 2 cut(s) | 87, 546 |
| Hsp92II | CATG | 3 cut(s) | 114, 315, 335 |
| Kzo9I | GATC | 2 cut(s) | 90, 517 |
| MaeI | CTAG | 1 cut(s) | 119 |
| MaeIII | GTNAC | 1 cut(s) | 232 |
| MalI | GATC | 2 cut(s) | 92, 519 |
| MboI | GATC | 2 cut(s) | 90, 517 |
| MboII | GAAGA | 5 cut(s) | 73, 88, 156, 512, 516 |
| MflI | RGATCY | 1 cut(s) | 90 |
| MluCI | AATT | 3 cut(s) | 423, 479, 539 |
| MlyI | GAGTC | 2 cut(s) | 239, 244 |
| MnlI | CCTC | 4 cut(s) | 49, 115, 188, 443 |
| MseI | TTAA | 3 cut(s) | 132, 417, 476 |
| MslI | CAYNNNNRTG | 2 cut(s) | 336, 528 |
| MspR9I | CCNGG | 1 cut(s) | 397 |
| MvaI | CCWGG | 1 cut(s) | 397 |
| NdeII | GATC | 2 cut(s) | 90, 517 |
| NlaIII | CATG | 3 cut(s) | 114, 315, 335 |
| NlaIV | GGNNCC | 1 cut(s) | 37 |
| NmuCI | GTSAC | 1 cut(s) | 232 |
| NspI | RCATGY | 1 cut(s) | 114 |
| PciI | ACATGT | 1 cut(s) | 110 |
| PfeI | GAWTC | 4 cut(s) | 64, 184, 221, 382 |
| PleI | GAGTC | 2 cut(s) | 239, 244 |
| PpsI | GAGTC | 2 cut(s) | 239, 244 |
| PpuMI | RGGWCCY | 1 cut(s) | 36 |
| PscI | ACATGT | 1 cut(s) | 110 |
| PshAI | GACNNNNGTC | 1 cut(s) | 34 |
| Psp5II | RGGWCCY | 1 cut(s) | 36 |
| Psp6I | CCWGG | 1 cut(s) | 395 |
| PspGI | CCWGG | 1 cut(s) | 395 |
| PspN4I | GGNNCC | 1 cut(s) | 37 |
| PspPI | GGNCC | 2 cut(s) | 36, 533 |
| PspPPI | RGGWCCY | 1 cut(s) | 36 |
| PstI | CTGCAG | 1 cut(s) | 74 |
| PsuI | RGATCY | 1 cut(s) | 90 |
| RsaI | GTAC | 4 cut(s) | 9, 190, 228, 368 |
| RsaNI | GTAC | 4 cut(s) | 8, 189, 227, 367 |
| RseI | CAYNNNNRTG | 2 cut(s) | 336, 528 |
| SaqAI | TTAA | 3 cut(s) | 132, 417, 476 |
| Sau3AI | GATC | 2 cut(s) | 90, 517 |
| Sau96I | GGNCC | 2 cut(s) | 36, 533 |
| SchI | GAGTC | 2 cut(s) | 239, 244 |
| ScrFI | CCNGG | 1 cut(s) | 397 |
| SetI | ASST | 6 cut(s) | 52, 58, 234, 295, 348, 352 |
| SfcI | CTRYAG | 1 cut(s) | 70 |
| SinI | GGWCC | 1 cut(s) | 36 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 336, 528 |
| Sse9I | AATT | 3 cut(s) | 423, 479, 539 |
| SsiI | CCGC | 1 cut(s) | 198 |
| SspMI | CTAG | 1 cut(s) | 119 |
| StyD4I | CCNGG | 1 cut(s) | 395 |
| TaaI | ACNGT | 4 cut(s) | 23, 238, 274, 458 |
| TaqI | TCGA | 1 cut(s) | 248 |
| TasI | AATT | 3 cut(s) | 423, 479, 539 |
| TatI | WGTACW | 1 cut(s) | 226 |
| TfiI | GAWTC | 4 cut(s) | 64, 184, 221, 382 |
| Tru1I | TTAA | 3 cut(s) | 132, 417, 476 |
| Tru9I | TTAA | 3 cut(s) | 132, 417, 476 |
| TseFI | GTSAC | 1 cut(s) | 232 |
| Tsp45I | GTSAC | 1 cut(s) | 232 |
| TspDTI | ATGAA | 5 cut(s) | 303, 348, 354, 374, 435 |
| TspGWI | ACGGA | 1 cut(s) | 503 |
| VpaK11BI | GGWCC | 1 cut(s) | 36 |
| XapI | RAATTY | 2 cut(s) | 423, 539 |
| XceI | RCATGY | 1 cut(s) | 114 |
| XspI | CTAG | 1 cut(s) | 119 |