Rmu_sc0034436.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034436.1
OG0000147
Physical Location & Seq
Forward (+)
172 .. 798
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034436.1_g000001.1.cds

Sequence Viewer

Length: 627 bp
atgagttttggtataggatacagatacaatgtcaaccccatcaattctgcttatggtggaaaactgagcataaggtggctatccttgattactcaaagtacgtactttattgatactatcattagcactccaagtaatggtagtacggtaagagtaacatggatgtacggaccttcatactatacagataaggttgatttctggagctcctggaactataagagtcataatgatagcaacccttggttagtgatcagtgaccttaatgaattgcttttccagcatgggagagaaggtggtgttgcttgggatacaaatagaagatgtttcttaggctcttttattttaactaatgctcttttagatatagggttcaagggccaaaggttcacttgggctcaaaaggaggataatgtggtggtatcacaagaaagaattgatcgcagtctagtatgccagaattggttattgaattggcccgatacttaccttactcacctaactagagttgggtttgaccacaacccaattcttcttgaaacaaacccggtgcaagtgaaaaggaagtcctcatttaaatttgatgcctattgggctgatgatgatgaaagtttcccctattgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

208

Amino Acids

24.2

Weight (kDa)

6.06

Isoelectric Point (pI)

23.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 137
AcsI RAATTY 1 cut(s) 578
AfaI GTAC 4 cut(s) 100, 104, 145, 167
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 3 cut(s) 376, 472, 539
AjnI CCWGG 1 cut(s) 209
AluBI AGCT 1 cut(s) 207
AluI AGCT 1 cut(s) 207
Alw21I GWGCWC 1 cut(s) 209
AoxI GGCC 2 cut(s) 379, 476
ApoI RAATTY 1 cut(s) 578
AspS9I GGNCC 3 cut(s) 170, 379, 477
AsuC2I CCSGG 1 cut(s) 548
AsuHPI GGTGA 1 cut(s) 488
AvaII GGWCC 1 cut(s) 170
BanII GRGCYC 2 cut(s) 209, 400
Bbv12I GWGCWC 1 cut(s) 209
BccI CCATC 1 cut(s) 47
BciT130I CCWGG 1 cut(s) 211
BciVI GTATCC 2 cut(s) 11, 304
BclI TGATCA 1 cut(s) 252
BcnI CCSGG 1 cut(s) 548
BfaI CTAG 2 cut(s) 449, 504
BfuI GTATCC 2 cut(s) 11, 304
BglI GCCNNNNNGGC 1 cut(s) 593
Bme1390I CCNGG 2 cut(s) 211, 548
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 3 cut(s) 170, 379, 477
BmrFI CCNGG 2 cut(s) 211, 548
BmsI GCATC 1 cut(s) 574
BpmI CTGGAG 1 cut(s) 223
BpuMI CCSGG 1 cut(s) 548
BsaAI YACGTR 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 242
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 1 cut(s) 137
BseBI CCWGG 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMII CTCAG 1 cut(s) 56
BshFI GGCC 2 cut(s) 381, 478
BsiHKAI GWGCWC 1 cut(s) 209
BsiSI CCGG 1 cut(s) 548
BslI CCNNNNNNNGG 1 cut(s) 137
BsnI GGCC 2 cut(s) 381, 478
Bsp1286I GDGCHC 2 cut(s) 209, 400
Bsp143I GATC 2 cut(s) 252, 439
BspANI GGCC 2 cut(s) 381, 478
BspCNI CTCAG 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 2 cut(s) 252, 439
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 211
Bst4CI ACNGT 1 cut(s) 148
BstBAI YACGTR 1 cut(s) 102
BstDEI CTNAG 2 cut(s) 65, 331
BstF5I GGATG 1 cut(s) 168
BstKTI GATC 2 cut(s) 255, 442
BstMBI GATC 2 cut(s) 252, 439
BstMWI GCNNNNNNNGC 2 cut(s) 280, 593
BstNI CCWGG 1 cut(s) 211
BstSCI CCNGG 2 cut(s) 209, 546
BstSNI TACGTA 1 cut(s) 102
BsuI GTATCC 2 cut(s) 11, 304
BsuRI GGCC 2 cut(s) 381, 478
BtsCI GGATG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 262
Cfr13I GGNCC 3 cut(s) 170, 379, 477
Csp6I GTAC 4 cut(s) 99, 103, 144, 166
CviAII CATG 2 cut(s) 159, 284
CviJI RGCY 7 cut(s) 79, 207, 336, 381, 398, 478, 596
CviKI_1 RGCY 7 cut(s) 79, 207, 336, 381, 398, 478, 596
CviQI GTAC 4 cut(s) 99, 103, 144, 166
DdeI CTNAG 2 cut(s) 65, 331
DpnI GATC 2 cut(s) 254, 441
DpnII GATC 2 cut(s) 252, 439
DraI TTTAAA 1 cut(s) 577
Ecl136II GAGCTC 1 cut(s) 207
Eco105I TACGTA 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 242
Eco24I GRGCYC 2 cut(s) 209, 400
Eco47I GGWCC 1 cut(s) 170
Eco53kI GAGCTC 1 cut(s) 207
EcoICRI GAGCTC 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 209
EcoT14I CCWWGG 1 cut(s) 242
EcoT38I GRGCYC 2 cut(s) 209, 400
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 2 cut(s) 162, 287
FalI AAGNNNNNCTT 2 cut(s) 376, 408
FatI CATG 2 cut(s) 158, 283
FbaI TGATCA 1 cut(s) 252
FokI GGATG 1 cut(s) 175
FriOI GRGCYC 2 cut(s) 209, 400
FspBI CTAG 2 cut(s) 449, 504
GsuI CTGGAG 1 cut(s) 223
HaeIII GGCC 2 cut(s) 381, 478
HapII CCGG 1 cut(s) 548
Hin1II CATG 2 cut(s) 162, 287
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 1 cut(s) 223
HpaII CCGG 1 cut(s) 548
HphI GGTGA 1 cut(s) 488
Hpy166II GTNNAC 2 cut(s) 34, 390
Hpy188III TCNNGA 2 cut(s) 202, 536
Hpy8I GTNNAC 2 cut(s) 34, 390
HpyAV CCTTC 2 cut(s) 183, 287
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 101
HpyCH4V TGCA 1 cut(s) 553
HpyF10VI GCNNNNNNNGC 2 cut(s) 280, 593
HpyF3I CTNAG 2 cut(s) 65, 331
HpySE526I ACGT 1 cut(s) 101
Hsp92II CATG 2 cut(s) 162, 287
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 2 cut(s) 252, 439
LmnI GCTCC 2 cut(s) 204, 212
LpnPI CCDG 6 cut(s) 187, 196, 223, 293, 470, 561
LweI GCATC 1 cut(s) 574
MaeI CTAG 2 cut(s) 449, 504
MaeII ACGT 1 cut(s) 101
MaeIII GTNAC 2 cut(s) 154, 257
MalI GATC 2 cut(s) 254, 441
MboI GATC 2 cut(s) 252, 439
MboII GAAGA 2 cut(s) 333, 524
MhlI GDGCHC 2 cut(s) 209, 400
MluCI AATT 7 cut(s) 43, 269, 435, 460, 472, 528, 578
MlyI GAGTC 1 cut(s) 232
MnlI CCTC 2 cut(s) 400, 580
MseI TTAA 4 cut(s) 264, 347, 576, 625
MspI CCGG 1 cut(s) 548
MspR9I CCNGG 2 cut(s) 211, 548
MvaI CCWGG 1 cut(s) 211
MwoI GCNNNNNNNGC 2 cut(s) 280, 593
NciI CCSGG 1 cut(s) 548
NdeII GATC 2 cut(s) 252, 439
NlaIII CATG 2 cut(s) 162, 287
NmuCI GTSAC 1 cut(s) 257
PflMI CCANNNNNTGG 1 cut(s) 137
PfoI TCCNGGA 1 cut(s) 209
PleI GAGTC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 231
Ppu21I YACGTR 1 cut(s) 102
Psp124BI GAGCTC 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 209
PspGI CCWGG 1 cut(s) 209
PspPI GGNCC 3 cut(s) 170, 379, 477
RsaI GTAC 4 cut(s) 100, 104, 145, 167
RsaNI GTAC 4 cut(s) 99, 103, 144, 166
SacI GAGCTC 1 cut(s) 209
SaqAI TTAA 4 cut(s) 264, 347, 576, 625
Sau3AI GATC 2 cut(s) 252, 439
Sau96I GGNCC 3 cut(s) 170, 379, 477
SchI GAGTC 1 cut(s) 232
ScrFI CCNGG 2 cut(s) 211, 548
SduI GDGCHC 2 cut(s) 209, 400
SfaNI GCATC 1 cut(s) 574
SinI GGWCC 1 cut(s) 170
SmiI ATTTAAAT 1 cut(s) 577
SnaBI TACGTA 1 cut(s) 102
Sse9I AATT 7 cut(s) 43, 269, 435, 460, 472, 528, 578
SspMI CTAG 2 cut(s) 449, 504
SstI GAGCTC 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 209, 546
StyI CCWWGG 1 cut(s) 242
SwaI ATTTAAAT 1 cut(s) 577
TaaI ACNGT 1 cut(s) 148
TaiI ACGT 1 cut(s) 104
TasI AATT 7 cut(s) 43, 269, 435, 460, 472, 528, 578
Tru1I TTAA 4 cut(s) 264, 347, 576, 625
Tru9I TTAA 4 cut(s) 264, 347, 576, 625
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 3 cut(s) 165, 282, 621
TspGWI ACGGA 1 cut(s) 183
TspRI CASTG 1 cut(s) 262
Van91I CCANNNNNTGG 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 170
XapI RAATTY 1 cut(s) 578
XspI CTAG 2 cut(s) 449, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.