Rorug03G0108100

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000147
Physical Location & Seq
Reverse (-)
8687558 .. 8698136
10579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0108100.1

Sequence Viewer

Length: 1686 bp
ATGGCGAGTTCTCTCTCGCTCTCGCACCAATTCCTATGTACATATTCGTCGGAAACCAACCAATCATCTAAGACACAACCCCTCACCAGAACCCCAAAACGCTCCCTCGCTCTCCGCACCCTCCTCAAATCCACGTCTCCCAAGAACAGCTCCACTTCACTTCAAAGTTCGCCGGAAGAGCCAAACCCCATTATCAAAAAACCCAAAAGGGCGGCCAATCGGCCTGACCCGAGTCCTCCTTCCGAATTGTCCTTATTCAACTCACCCTTATTCATTCGGCTTCGTCGTTTAAGAGATGAGAGCGTCAGGTATGATGGGATTGTTGTGGACATTTTATCAATTGCATTGCCTGCTGCTTTGGCTCTGGCTGCTGACCCCATTGCTTCTTTGATTGATACAGCCTTTGTTGGGCATTTAGGATCTGTGGAACTGGCAGCAGTTGGTGTTTCGGCTTCGGTGTTCAATTTGGTTTCGAAGTTGTTTAACGTTCCATTGCTCAATATTACCACGTCTTTCGTTGCCGAAGAGCAGGCATTAGTTGGCAAGGCAAAGGATGGTTCTCAACAGATTGGTGATGATTGCCAGGGTGACAAGGAAAGCAAGAAGTTCCTACCCTCGGCGTCCACTTCGTTGGCTCTTGCAGCTAGCATTGGCATTGCTGAAGCTGTTGCTCTTTTTCTTGGCTCGGGTGTCTTGATGGATGCCATGGGTATATCTGTTGATTCTCCAATGCGAATACCTGCCGAGCAGTTTCTTTCCCTAAGGGCATTTGGTGCTCCACCTATTGTAATTGCACTGGCTGCACAAGGAACATTTCGTGGATTTAAGGACACAAAGACACCTTTGTATGCCATCTGTGCTGGCAATGCACTTAATGCTGTACTGGATGGTATATTGATATTTATTTTTAATCTTGGCATTGGTGGTGCTGCAGTTGCTACTGTGATTTCTGAGTATTTGATTGCTGCTATTCTTTTGTGGAAATTGAATACCCAAATATTACTTATCCCTACTAATATTGATGGGAGAAGAATTGTCCGTTATCTCAAATCTGGGGGTCTTCTTATTGGCAGAACCTTAGCAGTGGTTGTAACTACGACACTAGCCACATCCATGGCAGCTAGGGAGGGCCCTGTCCCTATGGCTGGTCATCAGATTTGCATTCAAGTTTGGCTGGCAGTATCGTTGCTTACTGATGCATTAGCTCTTGCTGGTCAGACACTTCTTGCCAGTGGTTATTCCCAAAAGAATTATGAAGAAGCACGCCAAGTGGTTTACAAAGCTCTACAGCTGGGTTTAGTGATGGGAATTGGTTTGTCTGCCATATTATTCATTGGTTTTAAACCGTTTTCTGGCTTATTCAGCACAGACACAGATGTCCTAGCAATTGCATGTTCTGGTATATTGTTTGTTGCCGGATCTCAGCCGTTTAATGCTATAGCATTTGTTCTTGATGGGCTGTACTATGGAGTTTCAGACTTTGAATTTGCTGCTTATTCAATGGTGCTAGTAGGACTGACTTCTTCCGTGTTCATACTTTTGGCTGCTCCTGTTTTTGGTCTTGCTGGAATCTGGGCGGGGTTGTTTCTCTTCATGGCATTGCGTGTAATAGCTGGAATTTGGAGGTTGGGTACAAAAAGTGGACCATGGAAACTGGTCTGGGATGAAGGGGAGTTGAAAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

561

Amino Acids

59.36

Weight (kDa)

8.81

Isoelectric Point (pI)

35.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 196 - 296 4e-09 MatE
MatE PF01554 360 - 503 1.4e-15 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1376
Acc36I ACCTGC 1 cut(s) 748
AciI CCGC 3 cut(s) 115, 212, 1577
AclI AACGTT 1 cut(s) 486
AclWI GGATC 2 cut(s) 427, 1426
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 2 cut(s) 1484, 1617
AcuI CTGAAG 1 cut(s) 681
AcyI GRCGYC 1 cut(s) 620
AfaI GTAC 4 cut(s) 40, 882, 1463, 1633
AfiI CCNNNNNNNGG 5 cut(s) 408, 616, 1145, 1352, 1556
AgsI TTSAA 8 cut(s) 164, 259, 463, 988, 1166, 1484, 1500, 1678
AjiI CACGTC 2 cut(s) 135, 510
AjnI CCWGG 1 cut(s) 582
AluBI AGCT 8 cut(s) 150, 644, 665, 1121, 1205, 1283, 1291, 1613
AluI AGCT 8 cut(s) 150, 644, 665, 1121, 1205, 1283, 1291, 1613
Alw21I GWGCWC 1 cut(s) 778
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 2 cut(s) 427, 1426
Ama87I CYCGRG 2 cut(s) 229, 685
AoxI GGCC 3 cut(s) 213, 221, 1129
ApaI GGGCCC 1 cut(s) 1133
ApoI RAATTY 2 cut(s) 1484, 1617
ArsI GACNNNNNNTTYG 2 cut(s) 1469, 1501
AspS9I GGNCC 3 cut(s) 1129, 1130, 1643
AsuHPI GGTGA 4 cut(s) 76, 255, 584, 599
AsuII TTCGAA 1 cut(s) 473
AsuNHI GCTAGC 1 cut(s) 644
AvaI CYCGRG 2 cut(s) 229, 685
AvaII GGWCC 1 cut(s) 1643
AxyI CCTNAGG 1 cut(s) 761
BaeGI GKGCMC 1 cut(s) 1133
BanII GRGCYC 1 cut(s) 1133
BbsI GAAGAC 1 cut(s) 1052
Bbv12I GWGCWC 1 cut(s) 778
BccI CCATC 8 cut(s) 308, 548, 691, 860, 881, 1016, 1297, 1448
BceAI ACGGC 1 cut(s) 1411
BciT130I CCWGG 1 cut(s) 584
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 5 cut(s) 645, 1103, 1122, 1382, 1508
BfmI CTRYAG 3 cut(s) 930, 1286, 1437
BfuAI ACCTGC 1 cut(s) 748
Bme1390I CCNGG 1 cut(s) 584
Bme18I GGWCC 1 cut(s) 1643
BmeT110I CYCGRG 2 cut(s) 229, 685
BmgBI CACGTC 2 cut(s) 135, 510
BmgT120I GGNCC 3 cut(s) 1129, 1130, 1643
BmiI GGNNCC 1 cut(s) 1131
BmrFI CCNGG 1 cut(s) 584
BmsI GCATC 2 cut(s) 691, 1186
BmtI GCTAGC 1 cut(s) 648
BoxI GACNNNNGTC 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 1052
Bpu10I CCTNAGC 1 cut(s) 1078
Bpu14I TTCGAA 1 cut(s) 473
BsaHI GRCGYC 1 cut(s) 620
BsaJI CCNNGG 5 cut(s) 583, 615, 705, 1113, 1646
BsaXI ACNNNNNCTCC 2 cut(s) 1615, 1645
Bsc4I CCNNNNNNNGG 5 cut(s) 408, 616, 1145, 1352, 1556
Bse1I ACTGG 5 cut(s) 435, 801, 888, 1230, 1659
Bse21I CCTNAGG 1 cut(s) 761
Bse3DI GCAATG 6 cut(s) 344, 378, 491, 654, 871, 1598
BseBI CCWGG 1 cut(s) 584
BseDI CCNNGG 5 cut(s) 583, 615, 705, 1113, 1646
BseGI GGATG 5 cut(s) 559, 706, 892, 1109, 1669
BseLI CCNNNNNNNGG 5 cut(s) 408, 616, 1145, 1352, 1556
BseMI GCAATG 6 cut(s) 344, 378, 491, 654, 871, 1598
BseMII CTCAG 2 cut(s) 942, 1436
BseNI ACTGG 5 cut(s) 435, 801, 888, 1230, 1659
BseRI GAGGAG 1 cut(s) 113
BseSI GKGCMC 1 cut(s) 1133
BseYI CCCAGC 1 cut(s) 1291
BsgI GTGCAG 1 cut(s) 786
BshFI GGCC 3 cut(s) 215, 223, 1131
BsiHKAI GWGCWC 1 cut(s) 778
BsiHKCI CYCGRG 2 cut(s) 229, 685
BsiSI CCGG 2 cut(s) 173, 1416
BslFI GGGAC 1 cut(s) 1121
BslI CCNNNNNNNGG 5 cut(s) 408, 616, 1145, 1352, 1556
BsmAI GTCTC 1 cut(s) 141
BsmBI CGTCTC 1 cut(s) 141
BsmFI GGGAC 1 cut(s) 1121
BsmI GAATGC 1 cut(s) 1161
BsnI GGCC 3 cut(s) 215, 223, 1131
BsoBI CYCGRG 2 cut(s) 229, 685
Bsp119I TTCGAA 1 cut(s) 473
Bsp120I GGGCCC 1 cut(s) 1129
Bsp1286I GDGCHC 2 cut(s) 778, 1133
Bsp1407I TGTACA 1 cut(s) 38
Bsp143I GATC 2 cut(s) 419, 1418
Bsp19I CCATGG 3 cut(s) 705, 1113, 1646
BspACI CCGC 3 cut(s) 115, 212, 1577
BspANI GGCC 3 cut(s) 215, 223, 1131
BspCNI CTCAG 2 cut(s) 943, 1435
BspLI GGNNCC 1 cut(s) 1131
BspMAI CTGCAG 1 cut(s) 934
BspMI ACCTGC 1 cut(s) 748
BspOI GCTAGC 1 cut(s) 648
BspPI GGATC 2 cut(s) 427, 1426
BspQI GCTCTTC 2 cut(s) 171, 519
BspT104I TTCGAA 1 cut(s) 473
BsrDI GCAATG 6 cut(s) 344, 378, 491, 654, 871, 1598
BsrGI TGTACA 1 cut(s) 38
BsrI ACTGG 5 cut(s) 435, 801, 888, 1230, 1659
BssECI CCNNGG 5 cut(s) 583, 615, 705, 1113, 1646
BssMI GATC 2 cut(s) 419, 1418
BssNI GRCGYC 1 cut(s) 620
BssT1I CCWWGG 3 cut(s) 705, 1113, 1646
Bst2UI CCWGG 1 cut(s) 584
Bst4CI ACNGT 2 cut(s) 943, 1347
Bst6I CTCTTC 3 cut(s) 171, 519, 1595
BstACI GRCGYC 1 cut(s) 620
BstAPI GCANNNNNTGC 4 cut(s) 350, 773, 800, 875
BstAUI TGTACA 1 cut(s) 38
BstBI TTCGAA 1 cut(s) 473
BstC8I GCNNGC 6 cut(s) 351, 531, 646, 862, 1176, 1264
BstDEI CTNAG 5 cut(s) 69, 761, 951, 1078, 1422
BstDSI CCRYGG 3 cut(s) 705, 1113, 1646
BstF5I GGATG 5 cut(s) 559, 706, 892, 1109, 1669
BstKTI GATC 2 cut(s) 422, 1421
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 2 cut(s) 419, 1418
BstNI CCWGG 1 cut(s) 584
BstNSI RCATGY 1 cut(s) 1395
BstPAI GACNNNNGTC 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 582
BstSFI CTRYAG 3 cut(s) 930, 1286, 1437
BstSLI GKGCMC 1 cut(s) 1133
BstV2I GAAGAC 1 cut(s) 1052
BstX2I RGATCY 2 cut(s) 419, 1418
BstXI CCANNNNNNTGG 2 cut(s) 631, 1114
BstYI RGATCY 2 cut(s) 419, 1418
Bsu36I CCTNAGG 1 cut(s) 761
BsuRI GGCC 3 cut(s) 215, 223, 1131
BtgI CCRYGG 3 cut(s) 705, 1113, 1646
BtrI CACGTC 2 cut(s) 135, 510
BtsCI GGATG 5 cut(s) 559, 706, 892, 1109, 1669
BtsI GCAGTG 1 cut(s) 1089
BtsIMutI CAGTG 3 cut(s) 794, 1089, 1237
BveI ACCTGC 1 cut(s) 748
Cac8I GCNNGC 6 cut(s) 351, 531, 646, 862, 1176, 1264
Cfr13I GGNCC 3 cut(s) 1129, 1130, 1643
CseI GACGC 2 cut(s) 292, 609
Csp6I GTAC 4 cut(s) 39, 881, 1462, 1632
CviAII CATG 5 cut(s) 706, 1114, 1392, 1594, 1647
CviQI GTAC 4 cut(s) 39, 881, 1462, 1632
DdeI CTNAG 5 cut(s) 69, 761, 951, 1078, 1422
DpnI GATC 2 cut(s) 421, 1420
DpnII GATC 2 cut(s) 419, 1418
DraI TTTAAA 1 cut(s) 1342
DrdI GACNNNNNNGTC 1 cut(s) 1376
DseDI GACNNNNNNGTC 1 cut(s) 1376
EaeI YGGCCR 1 cut(s) 213
Eam1104I CTCTTC 3 cut(s) 171, 519, 1595
EarI CTCTTC 3 cut(s) 171, 519, 1595
Eco130I CCWWGG 3 cut(s) 705, 1113, 1646
Eco24I GRGCYC 1 cut(s) 1133
Eco47I GGWCC 1 cut(s) 1643
Eco57I CTGAAG 1 cut(s) 681
Eco81I CCTNAGG 1 cut(s) 761
Eco88I CYCGRG 2 cut(s) 229, 685
EcoO109I RGGNCCY 2 cut(s) 1129, 1130
EcoRII CCWGG 1 cut(s) 582
EcoT14I CCWWGG 3 cut(s) 705, 1113, 1646
EcoT22I ATGCAT 1 cut(s) 1201
EcoT38I GRGCYC 1 cut(s) 1133
ErhI CCWWGG 3 cut(s) 705, 1113, 1646
Esp3I CGTCTC 1 cut(s) 141
FaeI CATG 5 cut(s) 709, 1117, 1395, 1597, 1650
FaqI GGGAC 1 cut(s) 1121
FatI CATG 5 cut(s) 705, 1113, 1391, 1593, 1646
FauI CCCGC 1 cut(s) 1570
FokI GGATG 5 cut(s) 566, 713, 899, 1096, 1676
FriOI GRGCYC 1 cut(s) 1133
FspBI CTAG 5 cut(s) 645, 1103, 1122, 1382, 1508
GsaI CCCAGC 1 cut(s) 1295
HaeIII GGCC 3 cut(s) 215, 223, 1131
HapII CCGG 2 cut(s) 173, 1416
HgaI GACGC 2 cut(s) 292, 609
Hin1I GRCGYC 1 cut(s) 620
Hin1II CATG 5 cut(s) 709, 1117, 1395, 1597, 1650
HinfI GANTC 3 cut(s) 232, 722, 1569
HpaII CCGG 2 cut(s) 173, 1416
HphI GGTGA 4 cut(s) 76, 255, 584, 599
Hpy166II GTNNAC 4 cut(s) 328, 624, 1276, 1643
Hpy188I TCNGA 6 cut(s) 52, 244, 952, 1155, 1218, 1477
Hpy188III TCNNGA 2 cut(s) 694, 1451
Hpy8I GTNNAC 4 cut(s) 328, 624, 1276, 1643
Hpy99I CGWCG 2 cut(s) 52, 288
HpyAV CCTTC 2 cut(s) 249, 1661
HpyCH4III ACNGT 2 cut(s) 943, 1347
HpyCH4IV ACGT 3 cut(s) 134, 486, 509
HpyCH4V TGCA 9 cut(s) 344, 641, 794, 803, 869, 932, 1161, 1199, 1391
HpyF3I CTNAG 5 cut(s) 69, 761, 951, 1078, 1422
HpySE526I ACGT 3 cut(s) 134, 486, 509
Hsp92I GRCGYC 1 cut(s) 620
Hsp92II CATG 5 cut(s) 709, 1117, 1395, 1597, 1650
Kzo9I GATC 2 cut(s) 419, 1418
LguI GCTCTTC 2 cut(s) 171, 519
LmnI GCTCC 4 cut(s) 107, 155, 781, 1552
LweI GCATC 2 cut(s) 691, 1186
MaeI CTAG 5 cut(s) 645, 1103, 1122, 1382, 1508
MaeII ACGT 3 cut(s) 134, 486, 509
MaeIII GTNAC 2 cut(s) 587, 1090
MalI GATC 2 cut(s) 421, 1420
MboI GATC 2 cut(s) 419, 1418
MboII GAAGA 7 cut(s) 188, 536, 1041, 1052, 1268, 1515, 1582
MfeI CAATTG 2 cut(s) 339, 1386
MflI RGATCY 2 cut(s) 419, 1418
MhlI GDGCHC 2 cut(s) 778, 1133
MlyI GAGTC 1 cut(s) 241
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 8 cut(s) 92, 116, 131, 134, 246, 625, 1120, 1617
Mph1103I ATGCAT 1 cut(s) 1201
MseI TTAA 7 cut(s) 290, 483, 825, 873, 909, 1341, 1431
MslI CAYNNNNRTG 1 cut(s) 1112
MspA1I CMGCKG 1 cut(s) 1291
MspI CCGG 2 cut(s) 173, 1416
MspR9I CCNGG 1 cut(s) 584
MunI CAATTG 2 cut(s) 339, 1386
Mva1269I GAATGC 1 cut(s) 1161
MvaI CCWGG 1 cut(s) 584
NcoI CCATGG 3 cut(s) 705, 1113, 1646
NdeII GATC 2 cut(s) 419, 1418
NheI GCTAGC 1 cut(s) 644
NlaIII CATG 5 cut(s) 709, 1117, 1395, 1597, 1650
NlaIV GGNNCC 1 cut(s) 1131
NmeAIII GCCGAG 2 cut(s) 596, 769
NmuCI GTSAC 1 cut(s) 587
NsiI ATGCAT 1 cut(s) 1201
NspI RCATGY 1 cut(s) 1395
NspV TTCGAA 1 cut(s) 473
PciSI GCTCTTC 2 cut(s) 171, 519
PcsI WCGNNNNNNNCGW 1 cut(s) 283
PctI GAATGC 1 cut(s) 1161
PfeI GAWTC 2 cut(s) 722, 1569
PleI GAGTC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 240
PshAI GACNNNNGTC 1 cut(s) 231
Psp1406I AACGTT 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 582
PspFI CCCAGC 1 cut(s) 1291
PspGI CCWGG 1 cut(s) 582
PspN4I GGNNCC 1 cut(s) 1131
PspOMI GGGCCC 1 cut(s) 1129
PspPI GGNCC 3 cut(s) 1129, 1130, 1643
PstI CTGCAG 1 cut(s) 934
PsuI RGATCY 2 cut(s) 419, 1418
PvuII CAGCTG 1 cut(s) 1291
RsaI GTAC 4 cut(s) 40, 882, 1463, 1633
RsaNI GTAC 4 cut(s) 39, 881, 1462, 1632
RseI CAYNNNNRTG 1 cut(s) 1112
SapI GCTCTTC 2 cut(s) 171, 519
SaqAI TTAA 7 cut(s) 290, 483, 825, 873, 909, 1341, 1431
Sau3AI GATC 2 cut(s) 419, 1418
Sau96I GGNCC 3 cut(s) 1129, 1130, 1643
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 1 cut(s) 584
SduI GDGCHC 2 cut(s) 778, 1133
SfaNI GCATC 2 cut(s) 691, 1186
SfcI CTRYAG 3 cut(s) 930, 1286, 1437
SfuI TTCGAA 1 cut(s) 473
SinI GGWCC 1 cut(s) 1643
SmiMI CAYNNNNRTG 1 cut(s) 1112
SsiI CCGC 3 cut(s) 115, 212, 1577
SspI AATATT 3 cut(s) 502, 999, 1018
SspMI CTAG 5 cut(s) 645, 1103, 1122, 1382, 1508
StyD4I CCNGG 1 cut(s) 582
StyI CCWWGG 3 cut(s) 705, 1113, 1646
TaaI ACNGT 2 cut(s) 943, 1347
TaiI ACGT 3 cut(s) 137, 489, 512
TaqI TCGA 1 cut(s) 473
TatI WGTACW 3 cut(s) 38, 880, 1461
TauI GCSGC 1 cut(s) 215
TfiI GAWTC 2 cut(s) 722, 1569
Tru1I TTAA 7 cut(s) 290, 483, 825, 873, 909, 1341, 1431
Tru9I TTAA 7 cut(s) 290, 483, 825, 873, 909, 1341, 1431
TscAI CASTG 3 cut(s) 801, 1089, 1237
TseFI GTSAC 1 cut(s) 587
Tsp45I GTSAC 1 cut(s) 587
TspDTI ATGAA 6 cut(s) 262, 1269, 1321, 1522, 1582, 1680
TspGWI ACGGA 2 cut(s) 1028, 1516
TspRI CASTG 3 cut(s) 801, 1089, 1237
VpaK11BI GGWCC 1 cut(s) 1643
XapI RAATTY 2 cut(s) 1484, 1617
XceI RCATGY 1 cut(s) 1395
XspI CTAG 5 cut(s) 645, 1103, 1122, 1382, 1508
Zsp2I ATGCAT 1 cut(s) 1201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.