Rh4CG393700

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000147
Physical Location & Seq
Reverse (-)
64297467 .. 64300564
3098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG393700.1

Sequence Viewer

Length: 1647 bp
ATGGCTAACAACCCATATTTTGATGTTTCGCACCTTCCTCTTAACCCTAATCCTCCTTGTCCAGTCCATGGCCCCTTCCCTGATGCCTTGAACTCTCACCCTTCTCTTATTACTCTCGGGGACAGTGCTAGCAATCCTCCACCTATTCCTCAACCTTTTGGCGAAGGTACCAATAAGCCCAGAGTTAATGAGCGGTTATTCCATTTAGCCCCTAACCTTCCTACGGCTCCTCCCCCGCAATACACTGTTCGTCGTGGTGCGACTAGTATTTCTTTCACTGCTCCCGCACCCAAAGTCTCCCTAGTGGATGAGGTCAATCCTGATGAGGTCCTTGATAATAATCGTCTTAGTCTTGGGGGTCAGGTTTTTGGTGAAGATGTCACTCCCAGAAGTGTTAGGGCTCGTTGCAATAATAGTTGGGTGGGCCTTTTGGGCTTCTGTCCCTTTCGTACTCCTTTACCGATCTTGACTGTTTGGGTCCGTTTTCCTTTCCTCCCTCCTCACTGTTGGAAACCCAAACCTATTAAGAAACTTGCTAATGCTGTGGGAAGATGTATTAAAGTTGATCCGGGGTCTCTTGATCAGAACAAATCCCTTTTTGTCAGAGCTTGCGTTGAACTGGACCTGACCTATACTCAACCTCGTGCTATTCAAGTGTTGGCTGATCCGTTCTCTGATGAGGTGAAAACAATTTTTATCAATTATGAGACTGTCTTTGAGGCTTGTTTTTTCTGTGGTAGGTTTGACCACCCTCTGGGAGCTTGTCCTCTTAAGGCTCCCAAGCGAAATTTCCTCATGTTCCCTAGAAACCAGAATAAACCAGCTTGTATTCCCGCTTCCTCAAATGTAGCTGGACATTCCGCTCCTCGAGTCCCCAGTGGTACCTTACTGGTCTTCCAGCATATTCGAGGCCCTAACTCCCCTGCTCGAGGACCCTTCTTTCAAGATGAAGATTCCAATTCACAGACGCATTCCAACTGGCAGCAGGTCCATCGTCGTAGCTCTAACCAATATGCTCGTTCTCCCAGACAGCCGACTACTAGACGCCCTGGTGTTTCTTTCAGGGATGTGGTTTCAGAAGCTCATATTTCTCAAGCTCTTGCAAATGATCCGGTTCAAGACCCTGTCCCTGATCCAGGTCACATTCCTGCTCCTGCTCCAATTCCAGACCATCAGATGCCTGAGGGCGATCCCTTCCCTATTCAAGATGACCTTCTTCAGTTCAATGAGAATGCTCCCCTAGCGGATAACCCTGAGTTTGTGGCTGATAATCAAAATCTTAATCTAATTTCCGACTCTGATGAAGACCAAATGATTGACATTGAAGGGGTAAGCTTTTCCTCCTCTGTTTCAGATTTAATTCAATCATCAGATGACACTATTTCGTATAGTTCGGATTCTGTTGCTTCTGGTTTATCTGCTCTTAGTTATACCTCTATAGACCCTGATTCGGATTATGTTCAGGAAAATGCTCCTTATTTGACTATTCTGAATTCGCTTGATAAGGATAACATGGTTTTTCCCCCTTTATTTGATTTCAATCAGGAGGCTAATGTGAATCAAGCCTCTTCTGGCAATGTTAAAGCAAATTCTGAGTCTGGTAATGAGTCGTTTGCTCCTGCTCTTTCTACTCAGTTGCCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

548

Amino Acids

59.95

Weight (kDa)

5.06

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 976
Acc65I GGTACC 2 cut(s) 167, 881
AccB1I GGYRCC 2 cut(s) 167, 881
AccB7I CCANNNNNTGG 2 cut(s) 68, 754
AccBSI CCGCTC 2 cut(s) 193, 863
AciI CCGC 6 cut(s) 193, 236, 285, 834, 861, 1244
AclWI GGATC 5 cut(s) 560, 659, 1103, 1127, 1184
AcsI RAATTY 3 cut(s) 787, 1492, 1588
AcuI CTGAAG 1 cut(s) 1202
AcyI GRCGYC 1 cut(s) 1045
AfaI GTAC 3 cut(s) 169, 451, 883
AfiI CCNNNNNNNGG 6 cut(s) 68, 223, 754, 929, 1136, 1450
AflII CTTAAG 1 cut(s) 770
AhlI ACTAGT 1 cut(s) 263
AjnI CCWGG 2 cut(s) 1048, 1135
AjuI GAANNNNNNNTTGG 2 cut(s) 773, 805
AluBI AGCT 8 cut(s) 608, 761, 824, 851, 1002, 1082, 1097, 1335
AluI AGCT 8 cut(s) 608, 761, 824, 851, 1002, 1082, 1097, 1335
Alw26I GTCTC 3 cut(s) 301, 579, 701
AlwI GGATC 5 cut(s) 560, 659, 1103, 1127, 1184
Ama87I CYCGRG 3 cut(s) 116, 867, 927
AoxI GGCC 3 cut(s) 70, 424, 910
ApeKI GCWGC 1 cut(s) 982
ApoI RAATTY 3 cut(s) 787, 1492, 1588
ArsI GACNNNNNNTTYG 2 cut(s) 1580, 1612
Asp718I GGTACC 2 cut(s) 167, 881
AspS9I GGNCC 8 cut(s) 71, 328, 424, 478, 622, 911, 932, 988
AsuC2I CCSGG 1 cut(s) 570
AsuHPI GGTGA 3 cut(s) 89, 383, 694
AsuNHI GCTAGC 1 cut(s) 128
AvaI CYCGRG 3 cut(s) 116, 867, 927
AvaII GGWCC 5 cut(s) 328, 478, 622, 932, 988
AxyI CCTNAGG 1 cut(s) 1182
BanI GGYRCC 2 cut(s) 167, 881
BanII GRGCYC 1 cut(s) 403
BarI GAAGNNNNNNTAC 2 cut(s) 820, 852
BauI CACGAG 1 cut(s) 642
BbsI GAAGAC 2 cut(s) 886, 1311
BbvI GCAGC 1 cut(s) 994
BccI CCATC 2 cut(s) 999, 1179
BceAI ACGGC 1 cut(s) 240
BcgI CGANNNNNNTGC 2 cut(s) 974, 1008
BciT130I CCWGG 2 cut(s) 1050, 1137
BclI TGATCA 1 cut(s) 580
BcnI CCSGG 1 cut(s) 570
BcoDI GTCTC 3 cut(s) 301, 579, 701
BcuI ACTAGT 1 cut(s) 263
BfaI CTAG 7 cut(s) 129, 264, 302, 804, 1041, 1241, 1641
BfmI CTRYAG 1 cut(s) 1437
BfrI CTTAAG 1 cut(s) 770
BfuAI ACCTGC 1 cut(s) 976
BglI GCCNNNNNGGC 1 cut(s) 432
BisI GCNGC 1 cut(s) 983
BlsI GCNGC 1 cut(s) 984
Bme1390I CCNGG 3 cut(s) 570, 1050, 1137
Bme18I GGWCC 5 cut(s) 328, 478, 622, 932, 988
BmeT110I CYCGRG 3 cut(s) 116, 867, 927
BmgT120I GGNCC 8 cut(s) 71, 328, 424, 478, 622, 911, 932, 988
BmiI GGNNCC 7 cut(s) 73, 169, 228, 479, 777, 883, 934
BmrFI CCNGG 3 cut(s) 570, 1050, 1137
BmrI ACTGGG 1 cut(s) 870
BmsI GCATC 2 cut(s) 73, 1167
BmtI GCTAGC 1 cut(s) 132
BmuI ACTGGG 1 cut(s) 870
BpiI GAAGAC 2 cut(s) 886, 1311
BpuEI CTTGAG 1 cut(s) 1077
BpuMI CCSGG 1 cut(s) 570
BsaBI GATNNNNATC 2 cut(s) 339, 1539
BsaHI GRCGYC 1 cut(s) 1045
BsaI GGTCTC 1 cut(s) 579
BsaJI CCNNGG 3 cut(s) 67, 569, 1048
BsaWI WCCGGW 1 cut(s) 1111
BsaXI ACNNNNNCTCC 2 cut(s) 214, 244
Bsc4I CCNNNNNNNGG 6 cut(s) 68, 223, 754, 929, 1136, 1450
Bse1I ACTGG 5 cut(s) 62, 624, 876, 894, 983
Bse21I CCTNAGG 1 cut(s) 1182
Bse3DI GCAATG 1 cut(s) 1582
Bse8I GATNNNNATC 2 cut(s) 339, 1539
BseBI CCWGG 2 cut(s) 1050, 1137
BseDI CCNNGG 3 cut(s) 67, 569, 1048
BseGI GGATG 2 cut(s) 313, 1072
BseJI GATNNNNATC 2 cut(s) 339, 1539
BseLI CCNNNNNNNGG 6 cut(s) 68, 223, 754, 929, 1136, 1450
BseMI GCAATG 1 cut(s) 1582
BseMII CTCAG 4 cut(s) 1173, 1245, 1584, 1646
BseNI ACTGG 5 cut(s) 62, 624, 876, 894, 983
BseRI GAGGAG 4 cut(s) 219, 489, 855, 1333
BseXI GCAGC 1 cut(s) 994
BshFI GGCC 3 cut(s) 72, 426, 912
BshNI GGYRCC 2 cut(s) 167, 881
BsiHKCI CYCGRG 3 cut(s) 116, 867, 927
BsiSI CCGG 2 cut(s) 569, 1112
BslFI GGGAC 4 cut(s) 134, 426, 857, 1112
BslI CCNNNNNNNGG 6 cut(s) 68, 223, 754, 929, 1136, 1450
BsmAI GTCTC 3 cut(s) 301, 579, 701
BsmFI GGGAC 4 cut(s) 134, 426, 857, 1112
BsmI GAATGC 2 cut(s) 970, 1237
BsnI GGCC 3 cut(s) 72, 426, 912
Bso31I GGTCTC 1 cut(s) 579
BsoBI CYCGRG 3 cut(s) 116, 867, 927
Bsp1286I GDGCHC 1 cut(s) 403
Bsp143I GATC 7 cut(s) 462, 565, 580, 664, 1108, 1132, 1189
Bsp19I CCATGG 1 cut(s) 67
BspACI CCGC 6 cut(s) 193, 236, 285, 834, 861, 1244
BspANI GGCC 3 cut(s) 72, 426, 912
BspCNI CTCAG 4 cut(s) 1174, 1246, 1585, 1645
BspLI GGNNCC 7 cut(s) 73, 169, 228, 479, 777, 883, 934
BspMI ACCTGC 1 cut(s) 976
BspOI GCTAGC 1 cut(s) 132
BspPI GGATC 5 cut(s) 560, 659, 1103, 1127, 1184
BspT107I GGYRCC 2 cut(s) 167, 881
BspTI CTTAAG 1 cut(s) 770
BspTNI GGTCTC 1 cut(s) 579
BsrBI CCGCTC 2 cut(s) 193, 863
BsrDI GCAATG 1 cut(s) 1582
BsrI ACTGG 5 cut(s) 62, 624, 876, 894, 983
BssECI CCNNGG 3 cut(s) 67, 569, 1048
BssMI GATC 7 cut(s) 462, 565, 580, 664, 1108, 1132, 1189
BssNI GRCGYC 1 cut(s) 1045
BssSI CACGAG 1 cut(s) 642
BssT1I CCWWGG 1 cut(s) 67
Bst2BI CACGAG 1 cut(s) 642
Bst2UI CCWGG 2 cut(s) 1050, 1137
Bst4CI ACNGT 5 cut(s) 125, 247, 472, 506, 712
Bst6I CTCTTC 1 cut(s) 1573
BstACI GRCGYC 1 cut(s) 1045
BstAFI CTTAAG 1 cut(s) 770
BstC8I GCNNGC 2 cut(s) 130, 610
BstDEI CTNAG 6 cut(s) 347, 1182, 1254, 1424, 1593, 1632
BstDSI CCRYGG 1 cut(s) 67
BstENI CCTNNNNNAGG 2 cut(s) 927, 1134
BstF5I GGATG 2 cut(s) 313, 1072
BstKTI GATC 7 cut(s) 465, 568, 583, 667, 1111, 1135, 1192
BstMAI GTCTC 3 cut(s) 301, 579, 701
BstMBI GATC 7 cut(s) 462, 565, 580, 664, 1108, 1132, 1189
BstMWI GCNNNNNNNGC 2 cut(s) 432, 1241
BstNI CCWGG 2 cut(s) 1050, 1137
BstSCI CCNGG 3 cut(s) 568, 1048, 1135
BstSFI CTRYAG 1 cut(s) 1437
BstV1I GCAGC 1 cut(s) 994
BstV2I GAAGAC 2 cut(s) 886, 1311
Bsu36I CCTNAGG 1 cut(s) 1182
BsuRI GGCC 3 cut(s) 72, 426, 912
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 2 cut(s) 313, 1072
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 5 cut(s) 130, 243, 276, 502, 883
BveI ACCTGC 1 cut(s) 976
Cac8I GCNNGC 2 cut(s) 130, 610
Cfr13I GGNCC 8 cut(s) 71, 328, 424, 478, 622, 911, 932, 988
CseI GACGC 2 cut(s) 976, 1053
Csp6I GTAC 3 cut(s) 168, 450, 882
CviAII CATG 3 cut(s) 68, 796, 1513
CviQI GTAC 3 cut(s) 168, 450, 882
DdeI CTNAG 6 cut(s) 347, 1182, 1254, 1424, 1593, 1632
DpnI GATC 7 cut(s) 464, 567, 582, 666, 1110, 1134, 1191
DpnII GATC 7 cut(s) 462, 565, 580, 664, 1108, 1132, 1189
Eam1104I CTCTTC 1 cut(s) 1573
EarI CTCTTC 1 cut(s) 1573
Eco130I CCWWGG 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 403
Eco31I GGTCTC 1 cut(s) 579
Eco47I GGWCC 5 cut(s) 328, 478, 622, 932, 988
Eco57I CTGAAG 1 cut(s) 1202
Eco81I CCTNAGG 1 cut(s) 1182
Eco88I CYCGRG 3 cut(s) 116, 867, 927
EcoNI CCTNNNNNAGG 2 cut(s) 927, 1134
EcoO109I RGGNCCY 3 cut(s) 328, 911, 932
EcoRI GAATTC 1 cut(s) 1492
EcoRII CCWGG 2 cut(s) 1048, 1135
EcoT14I CCWWGG 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 403
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 3 cut(s) 71, 799, 1516
FalI AAGNNNNNCTT 2 cut(s) 1197, 1229
FaqI GGGAC 4 cut(s) 134, 426, 857, 1112
FatI CATG 3 cut(s) 67, 795, 1512
FauI CCCGC 3 cut(s) 243, 292, 841
FbaI TGATCA 1 cut(s) 580
Fnu4HI GCNGC 1 cut(s) 983
FokI GGATG 2 cut(s) 320, 1079
FriOI GRGCYC 1 cut(s) 403
Fsp4HI GCNGC 1 cut(s) 983
FspBI CTAG 7 cut(s) 129, 264, 302, 804, 1041, 1241, 1641
GluI GCNGC 1 cut(s) 983
HaeIII GGCC 3 cut(s) 72, 426, 912
HapII CCGG 2 cut(s) 569, 1112
HgaI GACGC 2 cut(s) 976, 1053
Hin1I GRCGYC 1 cut(s) 1045
Hin1II CATG 3 cut(s) 71, 799, 1516
HindIII AAGCTT 1 cut(s) 1333
HinfI GANTC 8 cut(s) 870, 953, 1295, 1397, 1448, 1558, 1595, 1607
HpaII CCGG 2 cut(s) 569, 1112
HphI GGTGA 3 cut(s) 89, 383, 694
Hpy188III TCNNGA 9 cut(s) 320, 466, 578, 944, 1118, 1166, 1205, 1463, 1544
Hpy99I CGWCG 2 cut(s) 255, 999
HpyAV CCTTC 9 cut(s) 44, 85, 111, 158, 227, 946, 1204, 1223, 1319
HpyCH4III ACNGT 5 cut(s) 125, 247, 472, 506, 712
HpyCH4V TGCA 2 cut(s) 408, 1103
HpyF10VI GCNNNNNNNGC 2 cut(s) 432, 1241
HpyF3I CTNAG 6 cut(s) 347, 1182, 1254, 1424, 1593, 1632
Hsp92I GRCGYC 1 cut(s) 1045
Hsp92II CATG 3 cut(s) 71, 799, 1516
KpnI GGTACC 2 cut(s) 171, 885
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 7 cut(s) 462, 565, 580, 664, 1108, 1132, 1189
Lsp1109I GCAGC 1 cut(s) 994
LweI GCATC 2 cut(s) 73, 1167
MaeI CTAG 7 cut(s) 129, 264, 302, 804, 1041, 1241, 1641
MaeIII GTNAC 2 cut(s) 379, 1139
MalI GATC 7 cut(s) 464, 567, 582, 666, 1110, 1134, 1191
MbiI CCGCTC 2 cut(s) 193, 863
MboI GATC 7 cut(s) 462, 565, 580, 664, 1108, 1132, 1189
MboII GAAGA 7 cut(s) 386, 561, 886, 962, 1208, 1316, 1560
MhlI GDGCHC 1 cut(s) 403
MluCI AATT 9 cut(s) 690, 700, 787, 958, 1161, 1287, 1359, 1492, 1588
MlyI GAGTC 4 cut(s) 879, 1289, 1604, 1616
MmeI TCCRAC 3 cut(s) 488, 999, 1317
MseI TTAA 9 cut(s) 42, 186, 525, 558, 771, 1281, 1358, 1581, 1645
MspCI CTTAAG 1 cut(s) 770
MspI CCGG 2 cut(s) 569, 1112
MspR9I CCNGG 3 cut(s) 570, 1050, 1137
Mva1269I GAATGC 2 cut(s) 970, 1237
MvaI CCWGG 2 cut(s) 1050, 1137
MwoI GCNNNNNNNGC 2 cut(s) 432, 1241
NciI CCSGG 1 cut(s) 570
NcoI CCATGG 1 cut(s) 67
NdeII GATC 7 cut(s) 462, 565, 580, 664, 1108, 1132, 1189
NheI GCTAGC 1 cut(s) 128
NlaIII CATG 3 cut(s) 71, 799, 1516
NlaIV GGNNCC 7 cut(s) 73, 169, 228, 479, 777, 883, 934
NmuCI GTSAC 2 cut(s) 379, 1139
PaeR7I CTCGAG 2 cut(s) 867, 927
PctI GAATGC 2 cut(s) 970, 1237
PfeI GAWTC 4 cut(s) 953, 1397, 1448, 1558
PflFI GACNNNGTC 1 cut(s) 1124
PflMI CCANNNNNTGG 2 cut(s) 68, 754
PkrI GCNGC 1 cut(s) 984
PleI GAGTC 4 cut(s) 878, 1289, 1603, 1615
PpsI GAGTC 4 cut(s) 878, 1289, 1603, 1615
PpuMI RGGWCCY 2 cut(s) 328, 932
Psp5II RGGWCCY 2 cut(s) 328, 932
Psp6I CCWGG 2 cut(s) 1048, 1135
PspGI CCWGG 2 cut(s) 1048, 1135
PspN4I GGNNCC 7 cut(s) 73, 169, 228, 479, 777, 883, 934
PspPI GGNCC 8 cut(s) 71, 328, 424, 478, 622, 911, 932, 988
PspPPI RGGWCCY 2 cut(s) 328, 932
PspXI VCTCGAGB 2 cut(s) 867, 927
PsyI GACNNNGTC 1 cut(s) 1124
RsaI GTAC 3 cut(s) 169, 451, 883
RsaNI GTAC 3 cut(s) 168, 450, 882
SaqAI TTAA 9 cut(s) 42, 186, 525, 558, 771, 1281, 1358, 1581, 1645
SatI GCNGC 1 cut(s) 983
Sau3AI GATC 7 cut(s) 462, 565, 580, 664, 1108, 1132, 1189
Sau96I GGNCC 8 cut(s) 71, 328, 424, 478, 622, 911, 932, 988
SchI GAGTC 4 cut(s) 879, 1289, 1604, 1616
ScrFI CCNGG 3 cut(s) 570, 1050, 1137
SduI GDGCHC 1 cut(s) 403
SfaNI GCATC 2 cut(s) 73, 1167
SfcI CTRYAG 1 cut(s) 1437
Sfr274I CTCGAG 2 cut(s) 867, 927
SinI GGWCC 5 cut(s) 328, 478, 622, 932, 988
SlaI CTCGAG 2 cut(s) 867, 927
SmlI CTYRAG 4 cut(s) 770, 867, 927, 1092
SmoI CTYRAG 4 cut(s) 770, 867, 927, 1092
SpeI ACTAGT 1 cut(s) 263
Sse9I AATT 9 cut(s) 690, 700, 787, 958, 1161, 1287, 1359, 1492, 1588
SsiI CCGC 6 cut(s) 193, 236, 285, 834, 861, 1244
SspMI CTAG 7 cut(s) 129, 264, 302, 804, 1041, 1241, 1641
StyD4I CCNGG 3 cut(s) 568, 1048, 1135
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 5 cut(s) 125, 247, 472, 506, 712
TaqI TCGA 3 cut(s) 868, 907, 928
TasI AATT 9 cut(s) 690, 700, 787, 958, 1161, 1287, 1359, 1492, 1588
TfiI GAWTC 4 cut(s) 953, 1397, 1448, 1558
Tru1I TTAA 9 cut(s) 42, 186, 525, 558, 771, 1281, 1358, 1581, 1645
Tru9I TTAA 9 cut(s) 42, 186, 525, 558, 771, 1281, 1358, 1581, 1645
TscAI CASTG 5 cut(s) 130, 250, 283, 509, 883
TseFI GTSAC 2 cut(s) 379, 1139
TseI GCWGC 1 cut(s) 982
Tsp45I GTSAC 2 cut(s) 379, 1139
TspDTI ATGAA 2 cut(s) 963, 1317
TspGWI ACGGA 2 cut(s) 470, 657
TspRI CASTG 5 cut(s) 130, 250, 283, 509, 883
Tth111I GACNNNGTC 1 cut(s) 1124
Van91I CCANNNNNTGG 2 cut(s) 68, 754
Vha464I CTTAAG 1 cut(s) 770
VpaK11BI GGWCC 5 cut(s) 328, 478, 622, 932, 988
XagI CCTNNNNNAGG 2 cut(s) 927, 1134
XapI RAATTY 3 cut(s) 787, 1492, 1588
XhoI CTCGAG 2 cut(s) 867, 927
XspI CTAG 7 cut(s) 129, 264, 302, 804, 1041, 1241, 1641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.