ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 4 - 150 | 1.8e-07 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 546 |
| AcsI | RAATTY | 1 cut(s) | 259 |
| AcuI | CTGAAG | 1 cut(s) | 258 |
| AfaI | GTAC | 4 cut(s) | 271, 352, 371, 560 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 144, 216 |
| AgsI | TTSAA | 3 cut(s) | 61, 421, 565 |
| AjnI | CCWGG | 2 cut(s) | 137, 542 |
| AluBI | AGCT | 2 cut(s) | 252, 390 |
| AluI | AGCT | 2 cut(s) | 252, 390 |
| ApoI | RAATTY | 1 cut(s) | 259 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 297 |
| AsuHPI | GGTGA | 1 cut(s) | 425 |
| BanI | GGYRCC | 1 cut(s) | 546 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 362, 394 |
| BccI | CCATC | 1 cut(s) | 596 |
| BciT130I | CCWGG | 2 cut(s) | 139, 544 |
| BfaI | CTAG | 3 cut(s) | 32, 249, 387 |
| BfmI | CTRYAG | 1 cut(s) | 228 |
| BmcAI | AGTACT | 1 cut(s) | 560 |
| Bme1390I | CCNGG | 2 cut(s) | 139, 544 |
| BmiI | GGNNCC | 1 cut(s) | 548 |
| BmrFI | CCNGG | 2 cut(s) | 139, 544 |
| BmrI | ACTGGG | 1 cut(s) | 57 |
| BmuI | ACTGGG | 1 cut(s) | 57 |
| BpuEI | CTTGAG | 1 cut(s) | 137 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 568, 598 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 144, 216 |
| Bse1I | ACTGG | 1 cut(s) | 52 |
| BseBI | CCWGG | 2 cut(s) | 139, 544 |
| BseGI | GGATG | 1 cut(s) | 508 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 144, 216 |
| BseMII | CTCAG | 3 cut(s) | 59, 546, 605 |
| BseNI | ACTGG | 1 cut(s) | 52 |
| BshNI | GGYRCC | 1 cut(s) | 546 |
| BslFI | GGGAC | 1 cut(s) | 233 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 144, 216 |
| BsmFI | GGGAC | 1 cut(s) | 233 |
| BspCNI | CTCAG | 3 cut(s) | 60, 547, 604 |
| BspLI | GGNNCC | 1 cut(s) | 548 |
| BspT107I | GGYRCC | 1 cut(s) | 546 |
| BsrI | ACTGG | 1 cut(s) | 52 |
| Bst2UI | CCWGG | 2 cut(s) | 139, 544 |
| Bst6I | CTCTTC | 1 cut(s) | 137 |
| BstC8I | GCNNGC | 1 cut(s) | 207 |
| BstDEI | CTNAG | 4 cut(s) | 68, 555, 591, 608 |
| BstEII | GGTNACC | 1 cut(s) | 326 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 142 |
| BstF5I | GGATG | 1 cut(s) | 508 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 374 |
| BstNI | CCWGG | 2 cut(s) | 139, 544 |
| BstPI | GGTNACC | 1 cut(s) | 326 |
| BstSCI | CCNGG | 2 cut(s) | 137, 542 |
| BstSFI | CTRYAG | 1 cut(s) | 228 |
| BtsCI | GGATG | 1 cut(s) | 508 |
| BtsI | GCAGTG | 1 cut(s) | 576 |
| BtsIMutI | CAGTG | 2 cut(s) | 197, 576 |
| Cac8I | GCNNGC | 1 cut(s) | 207 |
| CseI | GACGC | 1 cut(s) | 53 |
| Csp6I | GTAC | 4 cut(s) | 270, 351, 370, 559 |
| CviAII | CATG | 3 cut(s) | 315, 335, 440 |
| CviQI | GTAC | 4 cut(s) | 270, 351, 370, 559 |
| DdeI | CTNAG | 4 cut(s) | 68, 555, 591, 608 |
| Eam1104I | CTCTTC | 1 cut(s) | 137 |
| EarI | CTCTTC | 1 cut(s) | 137 |
| Eco57I | CTGAAG | 1 cut(s) | 258 |
| Eco91I | GGTNACC | 1 cut(s) | 326 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 142 |
| EcoO65I | GGTNACC | 1 cut(s) | 326 |
| EcoRII | CCWGG | 2 cut(s) | 137, 542 |
| FaeI | CATG | 3 cut(s) | 318, 338, 443 |
| FaqI | GGGAC | 1 cut(s) | 233 |
| FatI | CATG | 3 cut(s) | 314, 334, 439 |
| FokI | GGATG | 1 cut(s) | 515 |
| FspBI | CTAG | 3 cut(s) | 32, 249, 387 |
| HgaI | GACGC | 1 cut(s) | 53 |
| Hin1II | CATG | 3 cut(s) | 318, 338, 443 |
| HincII | GTYRAC | 2 cut(s) | 178, 472 |
| HindII | GTYRAC | 2 cut(s) | 178, 472 |
| HinfI | GANTC | 1 cut(s) | 487 |
| HphI | GGTGA | 1 cut(s) | 425 |
| Hpy166II | GTNNAC | 2 cut(s) | 178, 472 |
| Hpy188I | TCNGA | 2 cut(s) | 69, 258 |
| Hpy8I | GTNNAC | 2 cut(s) | 178, 472 |
| Hpy99I | CGWCG | 1 cut(s) | 187 |
| HpyAV | CCTTC | 2 cut(s) | 195, 388 |
| HpyCH4V | TGCA | 1 cut(s) | 408 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 374 |
| HpyF3I | CTNAG | 4 cut(s) | 68, 555, 591, 608 |
| Hsp92II | CATG | 3 cut(s) | 318, 338, 443 |
| LpnPI | CCDG | 9 cut(s) | 11, 33, 56, 124, 151, 343, 460, 529, 556 |
| MaeI | CTAG | 3 cut(s) | 32, 249, 387 |
| MaeIII | GTNAC | 2 cut(s) | 326, 413 |
| MboII | GAAGA | 3 cut(s) | 154, 305, 482 |
| MluCI | AATT | 3 cut(s) | 19, 223, 259 |
| MmeI | TCCRAC | 1 cut(s) | 611 |
| MnlI | CCTC | 5 cut(s) | 97, 138, 140, 393, 471 |
| MroXI | GAANNNNTTC | 1 cut(s) | 297 |
| MseI | TTAA | 1 cut(s) | 279 |
| MslI | CAYNNNNRTG | 1 cut(s) | 339 |
| MspR9I | CCNGG | 2 cut(s) | 139, 544 |
| MvaI | CCWGG | 2 cut(s) | 139, 544 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 374 |
| NlaIII | CATG | 3 cut(s) | 318, 338, 443 |
| NlaIV | GGNNCC | 1 cut(s) | 548 |
| NmuCI | GTSAC | 1 cut(s) | 413 |
| PdmI | GAANNNNTTC | 1 cut(s) | 297 |
| PfeI | GAWTC | 1 cut(s) | 487 |
| Psp6I | CCWGG | 2 cut(s) | 137, 542 |
| PspEI | GGTNACC | 1 cut(s) | 326 |
| PspGI | CCWGG | 2 cut(s) | 137, 542 |
| PspN4I | GGNNCC | 1 cut(s) | 548 |
| RsaI | GTAC | 4 cut(s) | 271, 352, 371, 560 |
| RsaNI | GTAC | 4 cut(s) | 270, 351, 370, 559 |
| RseI | CAYNNNNRTG | 1 cut(s) | 339 |
| SaqAI | TTAA | 1 cut(s) | 279 |
| ScaI | AGTACT | 1 cut(s) | 560 |
| ScrFI | CCNGG | 2 cut(s) | 139, 544 |
| SetI | ASST | 5 cut(s) | 45, 254, 392, 415, 552 |
| SfcI | CTRYAG | 1 cut(s) | 228 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 339 |
| SmlI | CTYRAG | 1 cut(s) | 152 |
| SmoI | CTYRAG | 1 cut(s) | 152 |
| Sse9I | AATT | 3 cut(s) | 19, 223, 259 |
| SspMI | CTAG | 3 cut(s) | 32, 249, 387 |
| StyD4I | CCNGG | 2 cut(s) | 137, 542 |
| TaqI | TCGA | 1 cut(s) | 112 |
| TasI | AATT | 3 cut(s) | 19, 223, 259 |
| TatI | WGTACW | 3 cut(s) | 269, 350, 558 |
| TfiI | GAWTC | 1 cut(s) | 487 |
| Tru1I | TTAA | 1 cut(s) | 279 |
| Tru9I | TTAA | 1 cut(s) | 279 |
| TscAI | CASTG | 2 cut(s) | 197, 583 |
| TseFI | GTSAC | 1 cut(s) | 413 |
| Tsp45I | GTSAC | 1 cut(s) | 413 |
| TspDTI | ATGAA | 1 cut(s) | 253 |
| TspRI | CASTG | 2 cut(s) | 197, 583 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 142 |
| XapI | RAATTY | 1 cut(s) | 259 |
| XmnI | GAANNNNTTC | 1 cut(s) | 297 |
| XspI | CTAG | 3 cut(s) | 32, 249, 387 |
| ZrmI | AGTACT | 1 cut(s) | 560 |