Rh6CG231900

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000147
Physical Location & Seq
Forward (+)
39139208 .. 39151474
12267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG231900.1

Sequence Viewer

Length: 1008 bp
ATGAGGTTGATTTCTTGGAACTGTCAGGGGCTTGGATCCTCCCTGACAAGGAAAGCTTTGAGGAAGATTTGCAGAAGACAGAAACCAGATTTTCTGTTTCTAATGGAGACAAGACAACAGGAGAAGACTATCAAAGACTGGAAGAAACACTTGAGATTCACAGATTATCATGTTGTAAACCCCCTCCGCACTGGAGGGGGTTTAGCTCTGTTTTGGGGTGAAAATGTCCAGGTTCATATTCTCGATTCCACTCCAAACTATATAGATACTACTGTTTCTTTTATTTCTGATGCTTTTGTGTGTAAGATAACATGGTTTTACGGCAACCCTCATGAGAATGAGAAAAAAGCCTTTTGGAGTTTGATGTCCCGACGGTTTGTTAGCGAGGTTCAACCTTGGTTAGTGATCGGAGATTTCAATGAAATTCTTGATACCTCAGAGAAATGGGGAGGTGACATTTCTGCCCAGTGGAGATTGAATTTGTTTCGGGACTTTTTAAGTGGTAGGCAACTCAGAGATCTTCATTATAATGGTCCTGAAATTACTTGGTTTGCAGTGCGACATGATCGTGTTTTTATAAAGGAACGGTTAGATAGAGCTCTAGGCAATCTGGCCTGGTGCTCCTCACAGTCTCGAACCCAACTCTTCCATCTACCAAAAATTGGTTCTGATCATAGGCCAATTCTTTTGGATACTCACCCTATTGCTGTCAAAACCCAGTCCCCTTTCCGCTTTGAACAATATTGGACTACTCATGAAGATTATGCTGGTATTATCCATGATTCTTGGCATCAGAGATCACATGACCAACCTATGTCAGTTTGGAATTCTAATCTTTCTCGCTGTGGAAAAGCTCTAAAGTCCTGGATGTTAAGACCAACTCCTCACCAACCTAATCTCTTCTGCAAATCCATTACCGGCCAGCAACCCAAAGAGCCTTGCAACGATTATGTATCTCAACCTAATTCAGCTAGATGCCAATCTGTTGTGTTCCTAAGTACCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos Exo_endo_phos_2

Protein Analysis

335

Amino Acids

39.28

Weight (kDa)

9.4

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 4 - 225 1.6e-14 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 528, 578
AccB7I CCANNNNNTGG 1 cut(s) 662
AciI CCGC 2 cut(s) 187, 730
AclWI GGATC 2 cut(s) 30, 43
AcoI YGGCCR 1 cut(s) 919
AcsI RAATTY 3 cut(s) 423, 478, 826
AfaI GTAC 1 cut(s) 1000
AfiI CCNNNNNNNGG 2 cut(s) 48, 662
AgsI TTSAA 4 cut(s) 392, 418, 478, 737
AjnI CCWGG 3 cut(s) 228, 614, 863
AjuI GAANNNNNNNTTGG 2 cut(s) 649, 681
AluBI AGCT 5 cut(s) 56, 206, 599, 854, 971
AluI AGCT 5 cut(s) 56, 206, 599, 854, 971
Alw21I GWGCWC 2 cut(s) 601, 623
Alw26I GTCTC 2 cut(s) 101, 636
AlwI GGATC 2 cut(s) 30, 43
AoxI GGCC 3 cut(s) 612, 677, 919
ApoI RAATTY 3 cut(s) 423, 478, 826
AspS9I GGNCC 1 cut(s) 533
AsuHPI GGTGA 4 cut(s) 230, 464, 689, 878
AvaII GGWCC 1 cut(s) 533
BaeI ACNNNNGTAYC 2 cut(s) 258, 291
BamHI GGATCC 1 cut(s) 35
BanII GRGCYC 1 cut(s) 601
BbsI GAAGAC 2 cut(s) 82, 131
Bbv12I GWGCWC 2 cut(s) 601, 623
BccI CCATC 1 cut(s) 657
BceAI ACGGC 1 cut(s) 337
BciT130I CCWGG 3 cut(s) 230, 616, 865
BciVI GTATCC 1 cut(s) 685
BclI TGATCA 1 cut(s) 670
BcoDI GTCTC 2 cut(s) 101, 636
BfaI CTAG 2 cut(s) 602, 972
BfuI GTATCC 1 cut(s) 685
BglII AGATCT 1 cut(s) 517
Bme1390I CCNGG 3 cut(s) 230, 616, 865
Bme18I GGWCC 1 cut(s) 533
BmgT120I GGNCC 1 cut(s) 533
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 3 cut(s) 230, 616, 865
BmrI ACTGGG 2 cut(s) 460, 712
BmsI GCATC 3 cut(s) 280, 799, 965
BmuI ACTGGG 2 cut(s) 460, 712
BpiI GAAGAC 2 cut(s) 82, 131
BpmI CTGGAG 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 172
BsaBI GATNNNNATC 1 cut(s) 979
BsaJI CCNNGG 1 cut(s) 395
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 662
Bse118I RCCGGY 1 cut(s) 917
Bse1I ACTGG 4 cut(s) 143, 196, 466, 718
Bse8I GATNNNNATC 1 cut(s) 979
BseBI CCWGG 3 cut(s) 230, 616, 865
BseDI CCNNGG 1 cut(s) 395
BseGI GGATG 1 cut(s) 873
BseJI GATNNNNATC 1 cut(s) 979
BseLI CCNNNNNNNGG 2 cut(s) 48, 662
BseMII CTCAG 2 cut(s) 450, 526
BseNI ACTGG 4 cut(s) 143, 196, 466, 718
BseRI GAGGAG 2 cut(s) 613, 873
BshFI GGCC 3 cut(s) 614, 679, 921
BsiHKAI GWGCWC 2 cut(s) 601, 623
BsiSI CCGG 1 cut(s) 918
BslFI GGGAC 3 cut(s) 352, 503, 706
BslI CCNNNNNNNGG 2 cut(s) 48, 662
BsmAI GTCTC 2 cut(s) 101, 636
BsmFI GGGAC 3 cut(s) 352, 503, 706
BsnI GGCC 3 cut(s) 614, 679, 921
Bsp1286I GDGCHC 2 cut(s) 601, 623
Bsp143I GATC 6 cut(s) 35, 405, 517, 565, 670, 797
BspACI CCGC 2 cut(s) 187, 730
BspANI GGCC 3 cut(s) 614, 679, 921
BspCNI CTCAG 2 cut(s) 449, 525
BspHI TCATGA 2 cut(s) 331, 754
BspLI GGNNCC 1 cut(s) 37
BspPI GGATC 2 cut(s) 30, 43
BsrFI RCCGGY 1 cut(s) 917
BsrI ACTGG 4 cut(s) 143, 196, 466, 718
BssAI RCCGGY 1 cut(s) 917
BssECI CCNNGG 1 cut(s) 395
BssMI GATC 6 cut(s) 35, 405, 517, 565, 670, 797
BssT1I CCWWGG 1 cut(s) 395
Bst2UI CCWGG 3 cut(s) 230, 616, 865
Bst4CI ACNGT 5 cut(s) 23, 274, 375, 588, 630
Bst6I CTCTTC 2 cut(s) 650, 905
BstC8I GCNNGC 1 cut(s) 923
BstDEI CTNAG 3 cut(s) 436, 512, 995
BstF5I GGATG 1 cut(s) 873
BstKTI GATC 6 cut(s) 38, 408, 520, 568, 673, 800
BstMAI GTCTC 2 cut(s) 101, 636
BstMBI GATC 6 cut(s) 35, 405, 517, 565, 670, 797
BstNI CCWGG 3 cut(s) 230, 616, 865
BstSCI CCNGG 3 cut(s) 228, 614, 863
BstV2I GAAGAC 2 cut(s) 82, 131
BstX2I RGATCY 2 cut(s) 35, 517
BstYI RGATCY 2 cut(s) 35, 517
BsuI GTATCC 1 cut(s) 685
BsuRI GGCC 3 cut(s) 614, 679, 921
BtsCI GGATG 1 cut(s) 873
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 3 cut(s) 189, 473, 561
Cac8I GCNNGC 1 cut(s) 923
CciI TCATGA 2 cut(s) 331, 754
Cfr10I RCCGGY 1 cut(s) 917
Cfr13I GGNCC 1 cut(s) 533
Csp6I GTAC 1 cut(s) 999
CviAII CATG 7 cut(s) 170, 312, 332, 563, 755, 779, 803
CviQI GTAC 1 cut(s) 999
DdeI CTNAG 3 cut(s) 436, 512, 995
DpnI GATC 6 cut(s) 37, 407, 519, 567, 672, 799
DpnII GATC 6 cut(s) 35, 405, 517, 565, 670, 797
EaeI YGGCCR 1 cut(s) 919
Eam1104I CTCTTC 2 cut(s) 650, 905
EarI CTCTTC 2 cut(s) 650, 905
Ecl136II GAGCTC 1 cut(s) 599
Eco130I CCWWGG 1 cut(s) 395
Eco24I GRGCYC 1 cut(s) 601
Eco47I GGWCC 1 cut(s) 533
Eco53kI GAGCTC 1 cut(s) 599
EcoICRI GAGCTC 1 cut(s) 599
EcoRI GAATTC 1 cut(s) 826
EcoRII CCWGG 3 cut(s) 228, 614, 863
EcoT14I CCWWGG 1 cut(s) 395
EcoT38I GRGCYC 1 cut(s) 601
ErhI CCWWGG 1 cut(s) 395
FaeI CATG 7 cut(s) 173, 315, 335, 566, 758, 782, 806
FalI AAGNNNNNCTT 4 cut(s) 40, 72, 134, 166
FaqI GGGAC 3 cut(s) 352, 503, 706
FatI CATG 7 cut(s) 169, 311, 331, 562, 754, 778, 802
FbaI TGATCA 1 cut(s) 670
FokI GGATG 1 cut(s) 880
FriOI GRGCYC 1 cut(s) 601
FspBI CTAG 2 cut(s) 602, 972
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 3 cut(s) 614, 679, 921
HapII CCGG 1 cut(s) 918
Hin1II CATG 7 cut(s) 173, 315, 335, 566, 758, 782, 806
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 3 cut(s) 156, 245, 782
HpaII CCGG 1 cut(s) 918
HphI GGTGA 4 cut(s) 230, 464, 689, 878
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 6 cut(s) 289, 410, 439, 515, 670, 795
Hpy188III TCNNGA 8 cut(s) 242, 332, 369, 428, 488, 536, 633, 755
Hpy8I GTNNAC 1 cut(s) 178
Hpy99I CGWCG 1 cut(s) 375
HpyCH4III ACNGT 5 cut(s) 23, 274, 375, 588, 630
HpyCH4V TGCA 4 cut(s) 72, 554, 906, 942
HpyF3I CTNAG 3 cut(s) 436, 512, 995
Hsp92II CATG 7 cut(s) 173, 315, 335, 566, 758, 782, 806
Ksp22I TGATCA 1 cut(s) 670
Kzo9I GATC 6 cut(s) 35, 405, 517, 565, 670, 797
LmnI GCTCC 1 cut(s) 626
LweI GCATC 3 cut(s) 280, 799, 965
MaeI CTAG 2 cut(s) 602, 972
MaeIII GTNAC 1 cut(s) 452
MalI GATC 6 cut(s) 37, 407, 519, 567, 672, 799
MboI GATC 6 cut(s) 35, 405, 517, 565, 670, 797
MboII GAAGA 8 cut(s) 76, 87, 136, 154, 512, 637, 770, 892
MflI RGATCY 2 cut(s) 35, 517
MhlI GDGCHC 2 cut(s) 601, 623
MluCI AATT 7 cut(s) 423, 478, 540, 660, 681, 826, 964
MseI TTAA 2 cut(s) 497, 872
MslI CAYNNNNRTG 3 cut(s) 336, 528, 567
MspI CCGG 1 cut(s) 918
MspR9I CCNGG 3 cut(s) 230, 616, 865
MvaI CCWGG 3 cut(s) 230, 616, 865
NdeII GATC 6 cut(s) 35, 405, 517, 565, 670, 797
NlaIII CATG 7 cut(s) 173, 315, 335, 566, 758, 782, 806
NlaIV GGNNCC 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 452
PagI TCATGA 2 cut(s) 331, 754
PfeI GAWTC 3 cut(s) 156, 245, 782
PflMI CCANNNNNTGG 1 cut(s) 662
PfoI TCCNGGA 1 cut(s) 863
PsiI TTATAA 2 cut(s) 528, 578
Psp124BI GAGCTC 1 cut(s) 601
Psp6I CCWGG 3 cut(s) 228, 614, 863
PspGI CCWGG 3 cut(s) 228, 614, 863
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 1 cut(s) 533
PsuI RGATCY 2 cut(s) 35, 517
RsaI GTAC 1 cut(s) 1000
RsaNI GTAC 1 cut(s) 999
RseI CAYNNNNRTG 3 cut(s) 336, 528, 567
SacI GAGCTC 1 cut(s) 601
SaqAI TTAA 2 cut(s) 497, 872
Sau3AI GATC 6 cut(s) 35, 405, 517, 565, 670, 797
Sau96I GGNCC 1 cut(s) 533
ScrFI CCNGG 3 cut(s) 230, 616, 865
SduI GDGCHC 2 cut(s) 601, 623
SfaNI GCATC 3 cut(s) 280, 799, 965
SinI GGWCC 1 cut(s) 533
SmiMI CAYNNNNRTG 3 cut(s) 336, 528, 567
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
Sse9I AATT 7 cut(s) 423, 478, 540, 660, 681, 826, 964
SsiI CCGC 2 cut(s) 187, 730
SspI AATATT 1 cut(s) 743
SspMI CTAG 2 cut(s) 602, 972
SstI GAGCTC 1 cut(s) 601
StyD4I CCNGG 3 cut(s) 228, 614, 863
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 5 cut(s) 23, 274, 375, 588, 630
TaqI TCGA 2 cut(s) 243, 634
TasI AATT 7 cut(s) 423, 478, 540, 660, 681, 826, 964
TfiI GAWTC 3 cut(s) 156, 245, 782
Tru1I TTAA 2 cut(s) 497, 872
Tru9I TTAA 2 cut(s) 497, 872
TscAI CASTG 3 cut(s) 196, 473, 561
TseFI GTSAC 1 cut(s) 452
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 4 cut(s) 224, 435, 512, 771
TspRI CASTG 3 cut(s) 196, 473, 561
Van91I CCANNNNNTGG 1 cut(s) 662
VpaK11BI GGWCC 1 cut(s) 533
XapI RAATTY 3 cut(s) 423, 478, 826
XspI CTAG 2 cut(s) 602, 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.