Rroxscaffold_6G00402000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000147
Physical Location & Seq
Reverse (-)
24403493 .. 24404997
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00402000.1

Sequence Viewer

Length: 648 bp
ATGCTCCCTAGAAATCCCAATGAACTTCATAGTATACCCAACCAAAACCAGGCTTCAAATTGGATCCCTGCCTACATGGCGAATGAAACTCTTTTATATTTCCAAGCATCCGAAGTCAAGTCCATTGTAGAAACTTTTCTCCAGTCAGAACTTCAACCTCGTCTTCACATACCTAAACCCGTCAACCTTCACAACCTATTGGCCGGTTCTAATGTGACGTTTGCTGATGCCACCAGGTTCGTGCATGACACTGTAGAGACCAACACTAAACTAAACCATCATCATGATGCTCATGCTATTGCTAGTCCTTTAGACCATATAGTTCTGGTGTTCAGAGCTCTCATTGTTGTTGTAGATGAGCCCCAGTCGTTAGCTATGATACCACTTCACAATGATCCTCCAACTGGGATAAATGATGATGATCTAGTGGCGGATGGGGAACTTGATCCAGACTTGGATACTGAGATTGATGAGGAAGTAAACGTGGAAGAGGAGATTGGTGCACCTGAACTAGACGTTCCAGCCATTAATACTACGGACTCTATTAATCAGGTTGTTGAGGACTTCCCTGCTGATGATGTCTCTGTTATGCCACACCGTAATCCCCGAAAAAGGGGTAGACATGATTTGGAGAACATTGGAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

23.95

Weight (kDa)

4.5

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 34, 619
AciI CCGC 1 cut(s) 431
AclWI GGATC 4 cut(s) 58, 71, 389, 440
AcoI YGGCCR 1 cut(s) 201
AfiI CCNNNNNNNGG 4 cut(s) 49, 404, 612, 613
AgsI TTSAA 2 cut(s) 57, 155
AjnI CCWGG 2 cut(s) 48, 233
AjuI GAANNNNNNNTTGG 2 cut(s) 480, 512
AluBI AGCT 2 cut(s) 338, 374
AluI AGCT 2 cut(s) 338, 374
Alw21I GWGCWC 2 cut(s) 340, 505
Alw26I GTCTC 2 cut(s) 251, 586
Alw44I GTGCAC 1 cut(s) 501
AlwI GGATC 4 cut(s) 58, 71, 389, 440
AoxI GGCC 1 cut(s) 201
ApaLI GTGCAC 1 cut(s) 501
AseI ATTAAT 2 cut(s) 528, 546
Asp700I GAANNNNTTC 1 cut(s) 135
BaeGI GKGCMC 1 cut(s) 505
BamHI GGATCC 1 cut(s) 63
BanII GRGCYC 2 cut(s) 340, 363
BbsI GAAGAC 1 cut(s) 155
Bbv12I GWGCWC 2 cut(s) 340, 505
BccI CCATC 2 cut(s) 285, 428
BciT130I CCWGG 2 cut(s) 50, 235
BciVI GTATCC 1 cut(s) 451
BcoDI GTCTC 2 cut(s) 251, 586
BfaI CTAG 4 cut(s) 9, 303, 425, 512
BfmI CTRYAG 1 cut(s) 252
BfuI GTATCC 1 cut(s) 451
BglI GCCNNNNNGGC 1 cut(s) 77
Bme1390I CCNGG 2 cut(s) 50, 235
BmiI GGNNCC 1 cut(s) 65
BmrFI CCNGG 2 cut(s) 50, 235
BmrI ACTGGG 2 cut(s) 358, 414
BmsI GCATC 3 cut(s) 116, 217, 277
BmuI ACTGGG 2 cut(s) 358, 414
BpiI GAAGAC 1 cut(s) 155
BpmI CTGGAG 1 cut(s) 125
BsaBI GATNNNNATC 1 cut(s) 420
BsaI GGTCTC 1 cut(s) 251
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 404, 612, 613
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 3 cut(s) 142, 364, 409
Bse8I GATNNNNATC 1 cut(s) 420
BseBI CCWGG 2 cut(s) 50, 235
BseGI GGATG 2 cut(s) 107, 439
BseJI GATNNNNATC 1 cut(s) 420
BseLI CCNNNNNNNGG 4 cut(s) 49, 404, 612, 613
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 3 cut(s) 142, 364, 409
BseRI GAGGAG 1 cut(s) 506
BseSI GKGCMC 1 cut(s) 505
BshFI GGCC 1 cut(s) 203
BsiHKAI GWGCWC 2 cut(s) 340, 505
BsiSI CCGG 1 cut(s) 204
BslI CCNNNNNNNGG 4 cut(s) 49, 404, 612, 613
BsmAI GTCTC 2 cut(s) 251, 586
BsnI GGCC 1 cut(s) 203
Bso31I GGTCTC 1 cut(s) 251
Bsp1286I GDGCHC 3 cut(s) 340, 363, 505
Bsp143I GATC 4 cut(s) 63, 394, 421, 445
BspACI CCGC 1 cut(s) 431
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 1 cut(s) 454
BspHI TCATGA 1 cut(s) 283
BspLI GGNNCC 1 cut(s) 65
BspPI GGATC 4 cut(s) 58, 71, 389, 440
BspTNI GGTCTC 1 cut(s) 251
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 3 cut(s) 142, 364, 409
BssAI RCCGGY 1 cut(s) 203
BssMI GATC 4 cut(s) 63, 394, 421, 445
BssNAI GTATAC 1 cut(s) 35
Bst1107I GTATAC 1 cut(s) 35
Bst2UI CCWGG 2 cut(s) 50, 235
Bst4CI ACNGT 2 cut(s) 253, 599
Bst6I CTCTTC 1 cut(s) 483
BstDEI CTNAG 1 cut(s) 462
BstF5I GGATG 2 cut(s) 107, 439
BstKTI GATC 4 cut(s) 66, 397, 424, 448
BstMAI GTCTC 2 cut(s) 251, 586
BstMBI GATC 4 cut(s) 63, 394, 421, 445
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 2 cut(s) 50, 235
BstSCI CCNGG 2 cut(s) 48, 233
BstSFI CTRYAG 1 cut(s) 252
BstSLI GKGCMC 1 cut(s) 505
BstV2I GAAGAC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
BstZ17I GTATAC 1 cut(s) 35
BsuI GTATCC 1 cut(s) 451
BsuRI GGCC 1 cut(s) 203
BtsCI GGATG 2 cut(s) 107, 439
BtsIMutI CAGTG 1 cut(s) 249
CciI TCATGA 1 cut(s) 283
Cfr10I RCCGGY 1 cut(s) 203
CsiI ACCWGGT 1 cut(s) 233
CviAII CATG 5 cut(s) 76, 245, 284, 293, 623
CviJI RGCY 6 cut(s) 53, 203, 338, 361, 374, 524
CviKI_1 RGCY 6 cut(s) 53, 203, 338, 361, 374, 524
DdeI CTNAG 1 cut(s) 462
DpnI GATC 4 cut(s) 65, 396, 423, 447
DpnII GATC 4 cut(s) 63, 394, 421, 445
EaeI YGGCCR 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
EciI GGCGGA 1 cut(s) 446
Ecl136II GAGCTC 1 cut(s) 338
Eco24I GRGCYC 2 cut(s) 340, 363
Eco31I GGTCTC 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 338
EcoICRI GAGCTC 1 cut(s) 338
EcoRII CCWGG 2 cut(s) 48, 233
EcoT38I GRGCYC 2 cut(s) 340, 363
FaeI CATG 5 cut(s) 79, 248, 287, 296, 626
FatI CATG 5 cut(s) 75, 244, 283, 292, 622
FblI GTMKAC 2 cut(s) 34, 619
FokI GGATG 2 cut(s) 94, 446
FriOI GRGCYC 2 cut(s) 340, 363
FspBI CTAG 4 cut(s) 9, 303, 425, 512
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 1 cut(s) 203
HapII CCGG 1 cut(s) 204
Hin1II CATG 5 cut(s) 79, 248, 287, 296, 626
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 1 cut(s) 539
HpaII CCGG 1 cut(s) 204
Hpy166II GTNNAC 5 cut(s) 35, 184, 481, 503, 620
Hpy188I TCNGA 3 cut(s) 112, 148, 335
Hpy188III TCNNGA 2 cut(s) 284, 449
Hpy8I GTNNAC 5 cut(s) 35, 184, 481, 503, 620
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 2 cut(s) 253, 599
HpyCH4IV ACGT 3 cut(s) 218, 483, 516
HpyCH4V TGCA 2 cut(s) 244, 503
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 462
HpySE526I ACGT 3 cut(s) 218, 483, 516
Hsp92II CATG 5 cut(s) 79, 248, 287, 296, 626
Kzo9I GATC 4 cut(s) 63, 394, 421, 445
LmnI GCTCC 1 cut(s) 9
LweI GCATC 3 cut(s) 116, 217, 277
MabI ACCWGGT 1 cut(s) 233
MaeI CTAG 4 cut(s) 9, 303, 425, 512
MaeII ACGT 3 cut(s) 218, 483, 516
MaeIII GTNAC 1 cut(s) 214
MalI GATC 4 cut(s) 65, 396, 423, 447
MboI GATC 4 cut(s) 63, 394, 421, 445
MboII GAAGA 2 cut(s) 155, 500
MflI RGATCY 1 cut(s) 63
MhlI GDGCHC 3 cut(s) 340, 363, 505
MluCI AATT 1 cut(s) 58
MlyI GAGTC 1 cut(s) 533
MmeI TCCRAC 1 cut(s) 425
MnlI CCTC 5 cut(s) 168, 408, 466, 484, 553
MroXI GAANNNNTTC 1 cut(s) 135
MseI TTAA 2 cut(s) 528, 546
MslI CAYNNNNRTG 2 cut(s) 282, 285
MspI CCGG 1 cut(s) 204
MspR9I CCNGG 2 cut(s) 50, 235
MvaI CCWGG 2 cut(s) 50, 235
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 4 cut(s) 63, 394, 421, 445
NlaIII CATG 5 cut(s) 79, 248, 287, 296, 626
NlaIV GGNNCC 1 cut(s) 65
NmuCI GTSAC 1 cut(s) 214
PagI TCATGA 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 135
PleI GAGTC 1 cut(s) 533
PpsI GAGTC 1 cut(s) 533
PshBI ATTAAT 2 cut(s) 528, 546
Psp124BI GAGCTC 1 cut(s) 340
Psp6I CCWGG 2 cut(s) 48, 233
PspGI CCWGG 2 cut(s) 48, 233
PspN4I GGNNCC 1 cut(s) 65
PsuI RGATCY 1 cut(s) 63
RseI CAYNNNNRTG 2 cut(s) 282, 285
SacI GAGCTC 1 cut(s) 340
SaqAI TTAA 2 cut(s) 528, 546
Sau3AI GATC 4 cut(s) 63, 394, 421, 445
SchI GAGTC 1 cut(s) 533
ScrFI CCNGG 2 cut(s) 50, 235
SduI GDGCHC 3 cut(s) 340, 363, 505
SexAI ACCWGGT 1 cut(s) 233
SfaNI GCATC 3 cut(s) 116, 217, 277
SfcI CTRYAG 1 cut(s) 252
SmiMI CAYNNNNRTG 2 cut(s) 282, 285
Sse9I AATT 1 cut(s) 58
SsiI CCGC 1 cut(s) 431
SspMI CTAG 4 cut(s) 9, 303, 425, 512
SstI GAGCTC 1 cut(s) 340
StyD4I CCNGG 2 cut(s) 48, 233
TaaI ACNGT 2 cut(s) 253, 599
TaiI ACGT 3 cut(s) 221, 486, 519
TasI AATT 1 cut(s) 58
Tru1I TTAA 2 cut(s) 528, 546
Tru9I TTAA 2 cut(s) 528, 546
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 3 cut(s) 17, 36, 99
TspGWI ACGGA 1 cut(s) 551
TspRI CASTG 1 cut(s) 256
VneI GTGCAC 1 cut(s) 501
VspI ATTAAT 2 cut(s) 528, 546
XmiI GTMKAC 2 cut(s) 34, 619
XmnI GAANNNNTTC 1 cut(s) 135
XspI CTAG 4 cut(s) 9, 303, 425, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.