ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 4 - 205 | 6.8e-19 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 198 |
| AclWI | GGATC | 1 cut(s) | 85 |
| AcoI | YGGCCR | 1 cut(s) | 505 |
| AcsI | RAATTY | 2 cut(s) | 423, 479 |
| AcuI | CTGAAG | 2 cut(s) | 173, 309 |
| AfaI | GTAC | 3 cut(s) | 9, 228, 368 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 602 |
| AflIII | ACRYGT | 1 cut(s) | 110 |
| AgsI | TTSAA | 2 cut(s) | 61, 469 |
| AjiI | CACGTC | 1 cut(s) | 113 |
| AjnI | CCWGG | 2 cut(s) | 395, 554 |
| AluBI | AGCT | 3 cut(s) | 56, 67, 350 |
| AluI | AGCT | 3 cut(s) | 56, 67, 350 |
| Alw21I | GWGCWC | 1 cut(s) | 563 |
| Alw26I | GTCTC | 1 cut(s) | 101 |
| AlwI | GGATC | 1 cut(s) | 85 |
| AoxI | GGCC | 2 cut(s) | 505, 552 |
| ApoI | RAATTY | 2 cut(s) | 423, 479 |
| AspS9I | GGNCC | 1 cut(s) | 36 |
| AvaII | GGWCC | 1 cut(s) | 36 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 258, 291 |
| BbsI | GAAGAC | 2 cut(s) | 151, 451 |
| Bbv12I | GWGCWC | 1 cut(s) | 563 |
| BccI | CCATC | 2 cut(s) | 137, 400 |
| BceAI | ACGGC | 1 cut(s) | 492 |
| BciT130I | CCWGG | 2 cut(s) | 397, 556 |
| BciVI | GTATCC | 1 cut(s) | 118 |
| BclI | TGATCA | 1 cut(s) | 565 |
| BcoDI | GTCTC | 1 cut(s) | 101 |
| BfmI | CTRYAG | 1 cut(s) | 70 |
| BfuI | GTATCC | 1 cut(s) | 118 |
| Bme1390I | CCNGG | 2 cut(s) | 397, 556 |
| Bme18I | GGWCC | 1 cut(s) | 36 |
| BmgBI | CACGTC | 1 cut(s) | 113 |
| BmgT120I | GGNCC | 1 cut(s) | 36 |
| BmiI | GGNNCC | 1 cut(s) | 37 |
| BmrFI | CCNGG | 2 cut(s) | 397, 556 |
| BmrI | ACTGGG | 1 cut(s) | 637 |
| BmuI | ACTGGG | 1 cut(s) | 637 |
| BoxI | GACNNNNGTC | 1 cut(s) | 34 |
| BpiI | GAAGAC | 2 cut(s) | 151, 451 |
| BpmI | CTGGAG | 2 cut(s) | 160, 213 |
| BsaJI | CCNNGG | 1 cut(s) | 395 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 602 |
| Bse1I | ACTGG | 3 cut(s) | 143, 196, 643 |
| BseBI | CCWGG | 2 cut(s) | 397, 556 |
| BseDI | CCNNGG | 1 cut(s) | 395 |
| BseGI | GGATG | 2 cut(s) | 321, 638 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 602 |
| BseMII | CTCAG | 1 cut(s) | 78 |
| BseNI | ACTGG | 3 cut(s) | 143, 196, 643 |
| BshFI | GGCC | 2 cut(s) | 507, 554 |
| BsiHKAI | GWGCWC | 1 cut(s) | 563 |
| BslFI | GGGAC | 1 cut(s) | 42 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 602 |
| BsmAI | GTCTC | 1 cut(s) | 101 |
| BsmFI | GGGAC | 1 cut(s) | 42 |
| BsnI | GGCC | 2 cut(s) | 507, 554 |
| Bsp1286I | GDGCHC | 1 cut(s) | 563 |
| Bsp1407I | TGTACA | 1 cut(s) | 226 |
| Bsp143I | GATC | 4 cut(s) | 90, 457, 532, 565 |
| BspACI | CCGC | 1 cut(s) | 198 |
| BspANI | GGCC | 2 cut(s) | 507, 554 |
| BspCNI | CTCAG | 1 cut(s) | 79 |
| BspLI | GGNNCC | 1 cut(s) | 37 |
| BspMAI | CTGCAG | 1 cut(s) | 74 |
| BspPI | GGATC | 1 cut(s) | 85 |
| BsrGI | TGTACA | 1 cut(s) | 226 |
| BsrI | ACTGG | 3 cut(s) | 143, 196, 643 |
| BssECI | CCNNGG | 1 cut(s) | 395 |
| BssMI | GATC | 4 cut(s) | 90, 457, 532, 565 |
| Bst2UI | CCWGG | 2 cut(s) | 397, 556 |
| Bst4CI | ACNGT | 3 cut(s) | 23, 238, 274 |
| BstAUI | TGTACA | 1 cut(s) | 226 |
| BstDEI | CTNAG | 2 cut(s) | 87, 597 |
| BstF5I | GGATG | 2 cut(s) | 321, 638 |
| BstKTI | GATC | 4 cut(s) | 93, 460, 535, 568 |
| BstMAI | GTCTC | 1 cut(s) | 101 |
| BstMBI | GATC | 4 cut(s) | 90, 457, 532, 565 |
| BstNI | CCWGG | 2 cut(s) | 397, 556 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 34 |
| BstSCI | CCNGG | 2 cut(s) | 395, 554 |
| BstSFI | CTRYAG | 1 cut(s) | 70 |
| BstV2I | GAAGAC | 2 cut(s) | 151, 451 |
| BstX2I | RGATCY | 1 cut(s) | 90 |
| BstYI | RGATCY | 1 cut(s) | 90 |
| BsuI | GTATCC | 1 cut(s) | 118 |
| BsuRI | GGCC | 2 cut(s) | 507, 554 |
| BtrI | CACGTC | 1 cut(s) | 113 |
| BtsCI | GGATG | 2 cut(s) | 321, 638 |
| Cfr13I | GGNCC | 1 cut(s) | 36 |
| Csp6I | GTAC | 3 cut(s) | 8, 227, 367 |
| CviAII | CATG | 3 cut(s) | 312, 332, 503 |
| CviJI | RGCY | 6 cut(s) | 56, 67, 206, 350, 507, 554 |
| CviKI_1 | RGCY | 6 cut(s) | 56, 67, 206, 350, 507, 554 |
| CviQI | GTAC | 3 cut(s) | 8, 227, 367 |
| DdeI | CTNAG | 2 cut(s) | 87, 597 |
| DpnI | GATC | 4 cut(s) | 92, 459, 534, 567 |
| DpnII | GATC | 4 cut(s) | 90, 457, 532, 565 |
| EaeI | YGGCCR | 1 cut(s) | 505 |
| Eco47I | GGWCC | 1 cut(s) | 36 |
| Eco57I | CTGAAG | 2 cut(s) | 173, 309 |
| EcoO109I | RGGNCCY | 1 cut(s) | 36 |
| EcoRII | CCWGG | 2 cut(s) | 395, 554 |
| FaeI | CATG | 3 cut(s) | 315, 335, 506 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 513, 545 |
| FaqI | GGGAC | 1 cut(s) | 42 |
| FatI | CATG | 3 cut(s) | 311, 331, 502 |
| FauI | CCCGC | 1 cut(s) | 191 |
| FbaI | TGATCA | 1 cut(s) | 565 |
| FokI | GGATG | 2 cut(s) | 328, 625 |
| GsuI | CTGGAG | 2 cut(s) | 160, 213 |
| HaeIII | GGCC | 2 cut(s) | 507, 554 |
| Hin1II | CATG | 3 cut(s) | 315, 335, 506 |
| HincII | GTYRAC | 2 cut(s) | 116, 178 |
| HindII | GTYRAC | 2 cut(s) | 116, 178 |
| HindIII | AAGCTT | 1 cut(s) | 54 |
| HinfI | GANTC | 5 cut(s) | 184, 221, 245, 250, 382 |
| Hpy166II | GTNNAC | 2 cut(s) | 116, 178 |
| Hpy188I | TCNGA | 5 cut(s) | 153, 163, 289, 565, 610 |
| Hpy188III | TCNNGA | 2 cut(s) | 86, 133 |
| Hpy8I | GTNNAC | 2 cut(s) | 116, 178 |
| HpyAV | CCTTC | 1 cut(s) | 284 |
| HpyCH4III | ACNGT | 3 cut(s) | 23, 238, 274 |
| HpyCH4IV | ACGT | 1 cut(s) | 112 |
| HpyCH4V | TGCA | 2 cut(s) | 72, 303 |
| HpyF3I | CTNAG | 2 cut(s) | 87, 597 |
| HpySE526I | ACGT | 1 cut(s) | 112 |
| Hsp92II | CATG | 3 cut(s) | 315, 335, 506 |
| Ksp22I | TGATCA | 1 cut(s) | 565 |
| Kzo9I | GATC | 4 cut(s) | 90, 457, 532, 565 |
| MaeII | ACGT | 1 cut(s) | 112 |
| MaeIII | GTNAC | 1 cut(s) | 232 |
| MalI | GATC | 4 cut(s) | 92, 459, 534, 567 |
| MboI | GATC | 4 cut(s) | 90, 457, 532, 565 |
| MboII | GAAGA | 4 cut(s) | 73, 156, 452, 456 |
| MflI | RGATCY | 1 cut(s) | 90 |
| MhlI | GDGCHC | 1 cut(s) | 563 |
| MluCI | AATT | 2 cut(s) | 423, 479 |
| MlyI | GAGTC | 2 cut(s) | 239, 244 |
| MnlI | CCTC | 3 cut(s) | 49, 115, 188 |
| MseI | TTAA | 1 cut(s) | 417 |
| MslI | CAYNNNNRTG | 4 cut(s) | 336, 468, 507, 643 |
| MspR9I | CCNGG | 2 cut(s) | 397, 556 |
| MvaI | CCWGG | 2 cut(s) | 397, 556 |
| NdeII | GATC | 4 cut(s) | 90, 457, 532, 565 |
| NlaIII | CATG | 3 cut(s) | 315, 335, 506 |
| NlaIV | GGNNCC | 1 cut(s) | 37 |
| NmuCI | GTSAC | 1 cut(s) | 232 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 505 |
| PfeI | GAWTC | 3 cut(s) | 184, 221, 382 |
| PleI | GAGTC | 2 cut(s) | 239, 244 |
| PpsI | GAGTC | 2 cut(s) | 239, 244 |
| PpuMI | RGGWCCY | 1 cut(s) | 36 |
| PshAI | GACNNNNGTC | 1 cut(s) | 34 |
| Psp5II | RGGWCCY | 1 cut(s) | 36 |
| Psp6I | CCWGG | 2 cut(s) | 395, 554 |
| PspGI | CCWGG | 2 cut(s) | 395, 554 |
| PspN4I | GGNNCC | 1 cut(s) | 37 |
| PspPI | GGNCC | 1 cut(s) | 36 |
| PspPPI | RGGWCCY | 1 cut(s) | 36 |
| PstI | CTGCAG | 1 cut(s) | 74 |
| PsuI | RGATCY | 1 cut(s) | 90 |
| RsaI | GTAC | 3 cut(s) | 9, 228, 368 |
| RsaNI | GTAC | 3 cut(s) | 8, 227, 367 |
| RseI | CAYNNNNRTG | 4 cut(s) | 336, 468, 507, 643 |
| SaqAI | TTAA | 1 cut(s) | 417 |
| Sau3AI | GATC | 4 cut(s) | 90, 457, 532, 565 |
| Sau96I | GGNCC | 1 cut(s) | 36 |
| SchI | GAGTC | 2 cut(s) | 239, 244 |
| ScrFI | CCNGG | 2 cut(s) | 397, 556 |
| SduI | GDGCHC | 1 cut(s) | 563 |
| SetI | ASST | 9 cut(s) | 52, 58, 69, 115, 234, 295, 348, 352, 598 |
| SfcI | CTRYAG | 1 cut(s) | 70 |
| SinI | GGWCC | 1 cut(s) | 36 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 336, 468, 507, 643 |
| Sse9I | AATT | 2 cut(s) | 423, 479 |
| SsiI | CCGC | 1 cut(s) | 198 |
| StyD4I | CCNGG | 2 cut(s) | 395, 554 |
| TaaI | ACNGT | 3 cut(s) | 23, 238, 274 |
| TaiI | ACGT | 1 cut(s) | 115 |
| TaqI | TCGA | 2 cut(s) | 248, 535 |
| TasI | AATT | 2 cut(s) | 423, 479 |
| TatI | WGTACW | 1 cut(s) | 226 |
| TfiI | GAWTC | 3 cut(s) | 184, 221, 382 |
| Tru1I | TTAA | 1 cut(s) | 417 |
| Tru9I | TTAA | 1 cut(s) | 417 |
| TseFI | GTSAC | 1 cut(s) | 232 |
| Tsp45I | GTSAC | 1 cut(s) | 232 |
| TspDTI | ATGAA | 7 cut(s) | 176, 348, 354, 374, 435, 533, 578 |
| TspGWI | ACGGA | 1 cut(s) | 443 |
| VpaK11BI | GGWCC | 1 cut(s) | 36 |
| XapI | RAATTY | 2 cut(s) | 423, 479 |