Rmu_sc0005254.1_g000002

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005254.1
OG0000147
Physical Location & Seq
Reverse (-)
398 .. 1246
849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005254.1_g000002.1.cds

Sequence Viewer

Length: 849 bp
atgaactcgaattctctctttgatcttggtttttgtagccccaagtttacctgggagaacaagagagatgatggcctgatcttagagcgtttagacaaggctctgggaaattccgactggcttcaagcccttcctgactcaaaaattacccatttagctcgcaccggattggatcactgtccccttcttgtttccctcaaacctcctgctccccgaatcgtaaagcccttcaaatttgaagctgcctgggttgaaaatcctgagtgtgaagagatagttcggaatgcttgggcgattggtaatgatgtcaatgcttacaagcttcttaattcaaagctttcaacttgtcaaggcagactcaaggagtggagcaagaggaaatttccaaataacaggaagttaatcaagtcccttaacaggatgctggctttgattcaagcagcctcacctattgatagaaacaaggaaagtgacattattatggaattagaaagagtttggacccttgaggaaagcttctggcaccaaaggtcaagagtaaactggctgctgaagggtgataaaaattccaagtttttccacatgactgctctccatagacaacaggttaatcgaatctcaccccttcacttgaatgatggatcttgggtttacgatgaggtcagtatccgtgcagcttttaaggactatttcagcaatctcttccaggcctcttctcctcgagatttcaacactgttttatgcaatgtttcttcaagaatttcagcctctcagaatcatgacctctctaaaccttttacggtggaggaagtcatgagagccaccaaacaactaggctcttggccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

282

Amino Acids

32.57

Weight (kDa)

9.27

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 522
AclWI GGATC 2 cut(s) 180, 649
AcsI RAATTY 6 cut(s) 10, 109, 233, 380, 565, 759
AcuI CTGAAG 1 cut(s) 572
AfiI CCNNNNNNNGG 1 cut(s) 417
AjnI CCWGG 3 cut(s) 50, 245, 705
AluBI AGCT 6 cut(s) 158, 242, 322, 337, 516, 677
AluI AGCT 6 cut(s) 158, 242, 322, 337, 516, 677
AlwI GGATC 2 cut(s) 180, 649
Ama87I CYCGRG 1 cut(s) 720
AoxI GGCC 3 cut(s) 73, 708, 842
ApeKI GCWGC 4 cut(s) 242, 440, 547, 674
ApoI RAATTY 6 cut(s) 10, 109, 233, 380, 565, 759
AspS9I GGNCC 2 cut(s) 501, 843
AsuHPI GGTGA 3 cut(s) 438, 569, 612
AvaI CYCGRG 1 cut(s) 720
AvaII GGWCC 1 cut(s) 501
BanI GGYRCC 1 cut(s) 522
BbvI GCAGC 4 cut(s) 229, 452, 534, 686
BccI CCATC 2 cut(s) 65, 632
BciT130I CCWGG 3 cut(s) 52, 247, 707
BciVI GTATCC 1 cut(s) 677
BfaI CTAG 1 cut(s) 833
BfuI GTATCC 1 cut(s) 677
BisI GCNGC 4 cut(s) 243, 441, 548, 675
BlsI GCNGC 4 cut(s) 244, 442, 549, 676
Bme1390I CCNGG 3 cut(s) 52, 247, 707
Bme18I GGWCC 1 cut(s) 501
BmeT110I CYCGRG 1 cut(s) 720
BmgT120I GGNCC 2 cut(s) 501, 843
BmiI GGNNCC 2 cut(s) 503, 524
BmrFI CCNGG 3 cut(s) 52, 247, 707
BmsI GCATC 1 cut(s) 411
BpuEI CTTGAG 2 cut(s) 344, 527
BsaJI CCNNGG 2 cut(s) 51, 246
BsaWI WCCGGW 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 417
Bse1I ACTGG 2 cut(s) 122, 548
Bse3DI GCAATG 1 cut(s) 751
BseBI CCWGG 3 cut(s) 52, 247, 707
BseDI CCNNGG 2 cut(s) 51, 246
BseGI GGATG 1 cut(s) 426
BseLI CCNNNNNNNGG 1 cut(s) 417
BseMI GCAATG 1 cut(s) 751
BseMII CTCAG 2 cut(s) 252, 785
BseNI ACTGG 2 cut(s) 122, 548
BseRI GAGGAG 1 cut(s) 708
BseXI GCAGC 4 cut(s) 229, 452, 534, 686
BsgI GTGCAG 1 cut(s) 693
BshFI GGCC 3 cut(s) 75, 710, 844
BshNI GGYRCC 1 cut(s) 522
BsiHKCI CYCGRG 1 cut(s) 720
BsiSI CCGG 1 cut(s) 165
BslFI GGGAC 2 cut(s) 165, 394
BslI CCNNNNNNNGG 1 cut(s) 417
BsmFI GGGAC 2 cut(s) 165, 394
BsmI GAATGC 1 cut(s) 289
BsnI GGCC 3 cut(s) 75, 710, 844
BsoBI CYCGRG 1 cut(s) 720
Bsp143I GATC 4 cut(s) 22, 78, 172, 641
BspANI GGCC 3 cut(s) 75, 710, 844
BspCNI CTCAG 2 cut(s) 253, 784
BspHI TCATGA 2 cut(s) 778, 813
BspLI GGNNCC 2 cut(s) 503, 524
BspPI GGATC 2 cut(s) 180, 649
BspT107I GGYRCC 1 cut(s) 522
BsrDI GCAATG 1 cut(s) 751
BsrI ACTGG 2 cut(s) 122, 548
BssECI CCNNGG 2 cut(s) 51, 246
BssMI GATC 4 cut(s) 22, 78, 172, 641
Bst2UI CCWGG 3 cut(s) 52, 247, 707
Bst4CI ACNGT 3 cut(s) 179, 736, 802
Bst6I CTCTTC 3 cut(s) 264, 707, 718
BstC8I GCNNGC 2 cut(s) 160, 426
BstDEI CTNAG 3 cut(s) 82, 261, 771
BstF5I GGATG 1 cut(s) 426
BstKTI GATC 4 cut(s) 25, 81, 175, 644
BstMBI GATC 4 cut(s) 22, 78, 172, 641
BstNI CCWGG 3 cut(s) 52, 247, 707
BstSCI CCNGG 3 cut(s) 50, 245, 705
BstV1I GCAGC 4 cut(s) 229, 452, 534, 686
BstX2I RGATCY 1 cut(s) 641
BstYI RGATCY 1 cut(s) 641
BsuI GTATCC 1 cut(s) 677
BsuRI GGCC 3 cut(s) 75, 710, 844
BtsCI GGATG 1 cut(s) 426
BtsIMutI CAGTG 2 cut(s) 175, 732
Cac8I GCNNGC 2 cut(s) 160, 426
CciI TCATGA 2 cut(s) 778, 813
Cfr13I GGNCC 2 cut(s) 501, 843
CviAII CATG 3 cut(s) 583, 779, 814
DdeI CTNAG 3 cut(s) 82, 261, 771
DpnI GATC 4 cut(s) 24, 80, 174, 643
DpnII GATC 4 cut(s) 22, 78, 172, 641
Eam1104I CTCTTC 3 cut(s) 264, 707, 718
EarI CTCTTC 3 cut(s) 264, 707, 718
Eco147I AGGCCT 1 cut(s) 710
Eco47I GGWCC 1 cut(s) 501
Eco57I CTGAAG 1 cut(s) 572
Eco88I CYCGRG 1 cut(s) 720
EcoRI GAATTC 1 cut(s) 10
EcoRII CCWGG 3 cut(s) 50, 245, 705
FaeI CATG 3 cut(s) 586, 782, 817
FaiI YATR 6 cut(s) 482, 584, 597, 742, 780, 815
FaqI GGGAC 2 cut(s) 165, 394
FatI CATG 3 cut(s) 582, 778, 813
Fnu4HI GCNGC 4 cut(s) 243, 441, 548, 675
FokI GGATG 1 cut(s) 433
Fsp4HI GCNGC 4 cut(s) 243, 441, 548, 675
FspBI CTAG 1 cut(s) 833
GluI GCNGC 4 cut(s) 243, 441, 548, 675
HaeIII GGCC 3 cut(s) 75, 710, 844
HapII CCGG 1 cut(s) 165
Hin1II CATG 3 cut(s) 586, 782, 817
HindIII AAGCTT 3 cut(s) 320, 335, 514
HinfI GANTC 6 cut(s) 137, 216, 357, 433, 615, 775
HpaII CCGG 1 cut(s) 165
HphI GGTGA 3 cut(s) 438, 569, 612
Hpy166II GTNNAC 3 cut(s) 48, 541, 652
Hpy188I TCNGA 3 cut(s) 115, 282, 774
Hpy188III TCNNGA 7 cut(s) 134, 260, 534, 722, 756, 779, 814
Hpy8I GTNNAC 3 cut(s) 48, 541, 652
HpyAV CCTTC 5 cut(s) 140, 194, 238, 547, 635
HpyCH4III ACNGT 3 cut(s) 179, 736, 802
HpyCH4V TGCA 2 cut(s) 674, 744
HpyF3I CTNAG 3 cut(s) 82, 261, 771
Hsp92II CATG 3 cut(s) 586, 782, 817
Kzo9I GATC 4 cut(s) 22, 78, 172, 641
LmnI GCTCC 2 cut(s) 214, 369
Lsp1109I GCAGC 4 cut(s) 229, 452, 534, 686
LweI GCATC 1 cut(s) 411
MaeI CTAG 1 cut(s) 833
MaeIII GTNAC 1 cut(s) 470
MalI GATC 4 cut(s) 24, 80, 174, 643
MboI GATC 4 cut(s) 22, 78, 172, 641
MboII GAAGA 4 cut(s) 281, 694, 705, 744
MflI RGATCY 1 cut(s) 641
MluCI AATT 9 cut(s) 10, 109, 144, 233, 328, 380, 485, 565, 759
MlyI GAGTC 2 cut(s) 131, 351
MmeI TCCRAC 1 cut(s) 138
MseI TTAA 5 cut(s) 327, 401, 414, 609, 681
MslI CAYNNNNRTG 2 cut(s) 479, 633
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 3 cut(s) 52, 247, 707
Mva1269I GAATGC 1 cut(s) 289
MvaI CCWGG 3 cut(s) 52, 247, 707
NdeII GATC 4 cut(s) 22, 78, 172, 641
NlaIII CATG 3 cut(s) 586, 782, 817
NlaIV GGNNCC 2 cut(s) 503, 524
NmuCI GTSAC 1 cut(s) 470
PaeR7I CTCGAG 1 cut(s) 720
PagI TCATGA 2 cut(s) 778, 813
PceI AGGCCT 1 cut(s) 710
PctI GAATGC 1 cut(s) 289
PfeI GAWTC 4 cut(s) 216, 433, 615, 775
PkrI GCNGC 4 cut(s) 244, 442, 549, 676
PleI GAGTC 2 cut(s) 131, 351
PpsI GAGTC 2 cut(s) 131, 351
Psp6I CCWGG 3 cut(s) 50, 245, 705
PspGI CCWGG 3 cut(s) 50, 245, 705
PspN4I GGNNCC 2 cut(s) 503, 524
PspPI GGNCC 2 cut(s) 501, 843
PsuI RGATCY 1 cut(s) 641
RseI CAYNNNNRTG 2 cut(s) 479, 633
SaqAI TTAA 5 cut(s) 327, 401, 414, 609, 681
SatI GCNGC 4 cut(s) 243, 441, 548, 675
Sau3AI GATC 4 cut(s) 22, 78, 172, 641
Sau96I GGNCC 2 cut(s) 501, 843
SchI GAGTC 2 cut(s) 131, 351
ScrFI CCNGG 3 cut(s) 52, 247, 707
SfaNI GCATC 1 cut(s) 411
Sfr274I CTCGAG 1 cut(s) 720
SinI GGWCC 1 cut(s) 501
SlaI CTCGAG 1 cut(s) 720
SmiMI CAYNNNNRTG 2 cut(s) 479, 633
SmlI CTYRAG 3 cut(s) 359, 506, 720
SmoI CTYRAG 3 cut(s) 359, 506, 720
Sse9I AATT 9 cut(s) 10, 109, 144, 233, 328, 380, 485, 565, 759
SseBI AGGCCT 1 cut(s) 710
SspMI CTAG 1 cut(s) 833
StuI AGGCCT 1 cut(s) 710
StyD4I CCNGG 3 cut(s) 50, 245, 705
TaaI ACNGT 3 cut(s) 179, 736, 802
TaqI TCGA 3 cut(s) 8, 613, 721
TasI AATT 9 cut(s) 10, 109, 144, 233, 328, 380, 485, 565, 759
TfiI GAWTC 4 cut(s) 216, 433, 615, 775
Tru1I TTAA 5 cut(s) 327, 401, 414, 609, 681
Tru9I TTAA 5 cut(s) 327, 401, 414, 609, 681
TscAI CASTG 2 cut(s) 182, 739
TseFI GTSAC 1 cut(s) 470
TseI GCWGC 4 cut(s) 242, 440, 547, 674
Tsp45I GTSAC 1 cut(s) 470
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 659
TspRI CASTG 2 cut(s) 182, 739
VpaK11BI GGWCC 1 cut(s) 501
XapI RAATTY 6 cut(s) 10, 109, 233, 380, 565, 759
XhoI CTCGAG 1 cut(s) 720
XspI CTAG 1 cut(s) 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.