Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 4 - 202 | 1.3e-11 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 251 |
| AccI | GTMKAC | 1 cut(s) | 542 |
| AclWI | GGATC | 3 cut(s) | 30, 43, 173 |
| AcsI | RAATTY | 2 cut(s) | 155, 388 |
| AcuI | CTGAAG | 1 cut(s) | 141 |
| AgsI | TTSAA | 3 cut(s) | 418, 440, 501 |
| AjnI | CCWGG | 1 cut(s) | 137 |
| AluBI | AGCT | 2 cut(s) | 125, 206 |
| AluI | AGCT | 2 cut(s) | 125, 206 |
| Alw26I | GTCTC | 3 cut(s) | 101, 238, 466 |
| AlwI | GGATC | 3 cut(s) | 30, 43, 173 |
| Ama87I | CYCGRG | 1 cut(s) | 61 |
| AoxI | GGCC | 2 cut(s) | 28, 532 |
| ApoI | RAATTY | 2 cut(s) | 155, 388 |
| AspS9I | GGNCC | 3 cut(s) | 28, 517, 533 |
| AvaI | CYCGRG | 1 cut(s) | 61 |
| AvaII | GGWCC | 1 cut(s) | 517 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 258, 291, 416, 449 |
| BamHI | GGATCC | 1 cut(s) | 35 |
| BbsI | GAAGAC | 1 cut(s) | 82 |
| BccI | CCATC | 2 cut(s) | 97, 191 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 152, 186 |
| BciT130I | CCWGG | 1 cut(s) | 139 |
| BcoDI | GTCTC | 3 cut(s) | 101, 238, 466 |
| Bme1390I | CCNGG | 1 cut(s) | 139 |
| Bme18I | GGWCC | 1 cut(s) | 517 |
| BmeT110I | CYCGRG | 1 cut(s) | 61 |
| BmgT120I | GGNCC | 3 cut(s) | 28, 517, 533 |
| BmiI | GGNNCC | 2 cut(s) | 37, 518 |
| BmrFI | CCNGG | 1 cut(s) | 139 |
| BpiI | GAAGAC | 1 cut(s) | 82 |
| BsaJI | CCNNGG | 3 cut(s) | 31, 395, 529 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 42, 72 |
| Bse1I | ACTGG | 2 cut(s) | 196, 487 |
| Bse3DI | GCAATG | 1 cut(s) | 606 |
| BseBI | CCWGG | 1 cut(s) | 139 |
| BseDI | CCNNGG | 3 cut(s) | 31, 395, 529 |
| BseGI | GGATG | 1 cut(s) | 223 |
| BseMI | GCAATG | 1 cut(s) | 606 |
| BseMII | CTCAG | 1 cut(s) | 264 |
| BseNI | ACTGG | 2 cut(s) | 196, 487 |
| BseRI | GAGGAG | 1 cut(s) | 75 |
| BshFI | GGCC | 2 cut(s) | 30, 534 |
| BsiHKCI | CYCGRG | 1 cut(s) | 61 |
| BslFI | GGGAC | 1 cut(s) | 530 |
| BsmAI | GTCTC | 3 cut(s) | 101, 238, 466 |
| BsmFI | GGGAC | 1 cut(s) | 530 |
| BsnI | GGCC | 2 cut(s) | 30, 534 |
| BsoBI | CYCGRG | 1 cut(s) | 61 |
| Bsp143I | GATC | 3 cut(s) | 35, 163, 178 |
| BspANI | GGCC | 2 cut(s) | 30, 534 |
| BspCNI | CTCAG | 1 cut(s) | 263 |
| BspLI | GGNNCC | 2 cut(s) | 37, 518 |
| BspPI | GGATC | 3 cut(s) | 30, 43, 173 |
| BsrDI | GCAATG | 1 cut(s) | 606 |
| BsrI | ACTGG | 2 cut(s) | 196, 487 |
| BssECI | CCNNGG | 3 cut(s) | 31, 395, 529 |
| BssMI | GATC | 3 cut(s) | 35, 163, 178 |
| BssNAI | GTATAC | 1 cut(s) | 543 |
| BssT1I | CCWWGG | 3 cut(s) | 31, 395, 529 |
| Bst1107I | GTATAC | 1 cut(s) | 543 |
| Bst2UI | CCWGG | 1 cut(s) | 139 |
| Bst4CI | ACNGT | 3 cut(s) | 226, 232, 429 |
| BstDEI | CTNAG | 2 cut(s) | 250, 537 |
| BstF5I | GGATG | 1 cut(s) | 223 |
| BstKTI | GATC | 3 cut(s) | 38, 166, 181 |
| BstMAI | GTCTC | 3 cut(s) | 101, 238, 466 |
| BstMBI | GATC | 3 cut(s) | 35, 163, 178 |
| BstNI | CCWGG | 1 cut(s) | 139 |
| BstSCI | CCNGG | 1 cut(s) | 137 |
| BstV2I | GAAGAC | 1 cut(s) | 82 |
| BstX2I | RGATCY | 1 cut(s) | 35 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 468 |
| BstYI | RGATCY | 1 cut(s) | 35 |
| BstZ17I | GTATAC | 1 cut(s) | 543 |
| BsuRI | GGCC | 2 cut(s) | 30, 534 |
| BtsCI | GGATG | 1 cut(s) | 223 |
| BtsIMutI | CAGTG | 1 cut(s) | 434 |
| Cfr13I | GGNCC | 3 cut(s) | 28, 517, 533 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 175, 210 |
| CviAII | CATG | 2 cut(s) | 316, 332 |
| CviJI | RGCY | 7 cut(s) | 30, 56, 125, 206, 400, 453, 534 |
| CviKI_1 | RGCY | 7 cut(s) | 30, 56, 125, 206, 400, 453, 534 |
| DdeI | CTNAG | 2 cut(s) | 250, 537 |
| DpnI | GATC | 3 cut(s) | 37, 165, 180 |
| DpnII | GATC | 3 cut(s) | 35, 163, 178 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 251 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 251 |
| Eco130I | CCWWGG | 3 cut(s) | 31, 395, 529 |
| Eco47I | GGWCC | 1 cut(s) | 517 |
| Eco57I | CTGAAG | 1 cut(s) | 141 |
| Eco88I | CYCGRG | 1 cut(s) | 61 |
| EcoO109I | RGGNCCY | 3 cut(s) | 28, 517, 533 |
| EcoRII | CCWGG | 1 cut(s) | 137 |
| EcoT14I | CCWWGG | 3 cut(s) | 31, 395, 529 |
| ErhI | CCWWGG | 3 cut(s) | 31, 395, 529 |
| FaeI | CATG | 2 cut(s) | 319, 335 |
| FaiI | YATR | 8 cut(s) | 11, 317, 321, 333, 369, 543, 557, 611 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 335, 367 |
| FaqI | GGGAC | 1 cut(s) | 530 |
| FatI | CATG | 2 cut(s) | 315, 331 |
| FblI | GTMKAC | 1 cut(s) | 542 |
| FokI | GGATG | 1 cut(s) | 230 |
| HaeIII | GGCC | 2 cut(s) | 30, 534 |
| Hin1II | CATG | 2 cut(s) | 319, 335 |
| HincII | GTYRAC | 1 cut(s) | 256 |
| HindII | GTYRAC | 1 cut(s) | 256 |
| HinfI | GANTC | 1 cut(s) | 474 |
| Hpy166II | GTNNAC | 2 cut(s) | 256, 543 |
| Hpy188III | TCNNGA | 1 cut(s) | 61 |
| Hpy8I | GTNNAC | 2 cut(s) | 256, 543 |
| HpyCH4III | ACNGT | 3 cut(s) | 226, 232, 429 |
| HpyCH4V | TGCA | 2 cut(s) | 173, 506 |
| HpyF3I | CTNAG | 2 cut(s) | 250, 537 |
| Hsp92II | CATG | 2 cut(s) | 319, 335 |
| Kzo9I | GATC | 3 cut(s) | 35, 163, 178 |
| LmnI | GCTCC | 1 cut(s) | 463 |
| LpnPI | CCDG | 9 cut(s) | 11, 56, 107, 124, 132, 151, 177, 257, 500 |
| MaeIII | GTNAC | 1 cut(s) | 226 |
| MalI | GATC | 3 cut(s) | 37, 165, 180 |
| MboI | GATC | 3 cut(s) | 35, 163, 178 |
| MboII | GAAGA | 1 cut(s) | 87 |
| MfeI | CAATTG | 1 cut(s) | 174 |
| MflI | RGATCY | 1 cut(s) | 35 |
| MluCI | AATT | 5 cut(s) | 19, 155, 174, 388, 509 |
| MlyI | GAGTC | 1 cut(s) | 468 |
| MnlI | CCTC | 4 cut(s) | 68, 96, 443, 552 |
| MslI | CAYNNNNRTG | 1 cut(s) | 336 |
| MspR9I | CCNGG | 1 cut(s) | 139 |
| MunI | CAATTG | 1 cut(s) | 174 |
| MvaI | CCWGG | 1 cut(s) | 139 |
| NdeII | GATC | 3 cut(s) | 35, 163, 178 |
| NlaIII | CATG | 2 cut(s) | 319, 335 |
| NlaIV | GGNNCC | 2 cut(s) | 37, 518 |
| PfoI | TCCNGGA | 1 cut(s) | 137 |
| PleI | GAGTC | 1 cut(s) | 468 |
| PpsI | GAGTC | 1 cut(s) | 468 |
| PpuMI | RGGWCCY | 1 cut(s) | 517 |
| Psp5II | RGGWCCY | 1 cut(s) | 517 |
| Psp6I | CCWGG | 1 cut(s) | 137 |
| PspGI | CCWGG | 1 cut(s) | 137 |
| PspN4I | GGNNCC | 2 cut(s) | 37, 518 |
| PspPI | GGNCC | 3 cut(s) | 28, 517, 533 |
| PspPPI | RGGWCCY | 1 cut(s) | 517 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 533, 565 |
| PsuI | RGATCY | 1 cut(s) | 35 |
| RseI | CAYNNNNRTG | 1 cut(s) | 336 |
| Sau3AI | GATC | 3 cut(s) | 35, 163, 178 |
| Sau96I | GGNCC | 3 cut(s) | 28, 517, 533 |
| SchI | GAGTC | 1 cut(s) | 468 |
| ScrFI | CCNGG | 1 cut(s) | 139 |
| SetI | ASST | 5 cut(s) | 121, 127, 208, 295, 522 |
| SinI | GGWCC | 1 cut(s) | 517 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 336 |
| Sse9I | AATT | 5 cut(s) | 19, 155, 174, 388, 509 |
| StyD4I | CCNGG | 1 cut(s) | 137 |
| StyI | CCWWGG | 3 cut(s) | 31, 395, 529 |
| TaaI | ACNGT | 3 cut(s) | 226, 232, 429 |
| TasI | AATT | 5 cut(s) | 19, 155, 174, 388, 509 |
| TscAI | CASTG | 1 cut(s) | 434 |
| TspDTI | ATGAA | 4 cut(s) | 17, 304, 354, 484 |
| TspRI | CASTG | 1 cut(s) | 434 |
| VpaK11BI | GGWCC | 1 cut(s) | 517 |
| XapI | RAATTY | 2 cut(s) | 155, 388 |
| XmiI | GTMKAC | 1 cut(s) | 542 |