ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 849 |
| AccBSI | CCGCTC | 1 cut(s) | 25 |
| AccI | GTMKAC | 2 cut(s) | 341, 1253 |
| AciI | CCGC | 4 cut(s) | 25, 508, 647, 720 |
| AclWI | GGATC | 5 cut(s) | 92, 149, 426, 561, 892 |
| AcoI | YGGCCR | 1 cut(s) | 297 |
| AcsI | RAATTY | 4 cut(s) | 278, 788, 1011, 1523 |
| AcuI | CTGAAG | 2 cut(s) | 171, 597 |
| AdeI | CACNNNGTG | 1 cut(s) | 1539 |
| AfaI | GTAC | 3 cut(s) | 885, 1214, 1267 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 62, 736, 1033 |
| AflIII | ACRYGT | 1 cut(s) | 1275 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1249 |
| AjnI | CCWGG | 2 cut(s) | 209, 1336 |
| AluBI | AGCT | 7 cut(s) | 322, 455, 612, 1102, 1234, 1438, 1549 |
| AluI | AGCT | 7 cut(s) | 322, 455, 612, 1102, 1234, 1438, 1549 |
| Alw21I | GWGCWC | 3 cut(s) | 566, 614, 1296 |
| Alw26I | GTCTC | 1 cut(s) | 803 |
| Alw44I | GTGCAC | 1 cut(s) | 1292 |
| AlwI | GGATC | 5 cut(s) | 92, 149, 426, 561, 892 |
| AoxI | GGCC | 4 cut(s) | 29, 180, 297, 1047 |
| ApaLI | GTGCAC | 1 cut(s) | 1292 |
| ApeKI | GCWGC | 1 cut(s) | 722 |
| ApoI | RAATTY | 4 cut(s) | 278, 788, 1011, 1523 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 232, 264 |
| AseI | ATTAAT | 1 cut(s) | 303 |
| AspLEI | GCGC | 1 cut(s) | 850 |
| AspS9I | GGNCC | 3 cut(s) | 189, 755, 1115 |
| AsuHPI | GGTGA | 3 cut(s) | 629, 661, 679 |
| AvaII | GGWCC | 3 cut(s) | 189, 755, 1115 |
| BaeGI | GKGCMC | 1 cut(s) | 1296 |
| BalI | TGGCCA | 1 cut(s) | 299 |
| BanII | GRGCYC | 1 cut(s) | 614 |
| BbsI | GAAGAC | 1 cut(s) | 1346 |
| Bbv12I | GWGCWC | 3 cut(s) | 566, 614, 1296 |
| BbvI | GCAGC | 1 cut(s) | 709 |
| BccI | CCATC | 5 cut(s) | 9, 500, 755, 1337, 1555 |
| BciT130I | CCWGG | 2 cut(s) | 211, 1338 |
| BclI | TGATCA | 3 cut(s) | 70, 919, 1473 |
| BcoDI | GTCTC | 1 cut(s) | 803 |
| BfaI | CTAG | 3 cut(s) | 231, 813, 1573 |
| BisI | GCNGC | 2 cut(s) | 720, 723 |
| BlsI | GCNGC | 2 cut(s) | 721, 724 |
| Bme1390I | CCNGG | 2 cut(s) | 211, 1338 |
| Bme18I | GGWCC | 3 cut(s) | 189, 755, 1115 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1249 |
| BmgT120I | GGNCC | 3 cut(s) | 189, 755, 1115 |
| BmiI | GGNNCC | 2 cut(s) | 756, 1084 |
| BmrFI | CCNGG | 2 cut(s) | 211, 1338 |
| BpiI | GAAGAC | 1 cut(s) | 1346 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1453, 1485 |
| Bpu10I | CCTNAGC | 1 cut(s) | 521 |
| BpuEI | CTTGAG | 2 cut(s) | 512, 1013 |
| BsaJI | CCNNGG | 2 cut(s) | 210, 1337 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 62, 736, 1033 |
| BseBI | CCWGG | 2 cut(s) | 211, 1338 |
| BseDI | CCNNGG | 2 cut(s) | 210, 1337 |
| BseGI | GGATG | 3 cut(s) | 52, 492, 888 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 62, 736, 1033 |
| BseMII | CTCAG | 3 cut(s) | 150, 660, 900 |
| BseRI | GAGGAG | 2 cut(s) | 332, 425 |
| BseSI | GKGCMC | 1 cut(s) | 1296 |
| BseXI | GCAGC | 1 cut(s) | 709 |
| BseYI | CCCAGC | 2 cut(s) | 455, 1457 |
| BshFI | GGCC | 4 cut(s) | 31, 182, 299, 1049 |
| BsiHKAI | GWGCWC | 3 cut(s) | 566, 614, 1296 |
| BslFI | GGGAC | 2 cut(s) | 473, 1304 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 62, 736, 1033 |
| BsmAI | GTCTC | 1 cut(s) | 803 |
| BsmFI | GGGAC | 2 cut(s) | 473, 1304 |
| BsnI | GGCC | 4 cut(s) | 31, 182, 299, 1049 |
| Bsp1286I | GDGCHC | 3 cut(s) | 566, 614, 1296 |
| Bsp1407I | TGTACA | 1 cut(s) | 1265 |
| BspACI | CCGC | 4 cut(s) | 25, 508, 647, 720 |
| BspANI | GGCC | 4 cut(s) | 31, 182, 299, 1049 |
| BspCNI | CTCAG | 3 cut(s) | 151, 661, 901 |
| BspLI | GGNNCC | 2 cut(s) | 756, 1084 |
| BspPI | GGATC | 5 cut(s) | 92, 149, 426, 561, 892 |
| BsrBI | CCGCTC | 1 cut(s) | 25 |
| BsrGI | TGTACA | 1 cut(s) | 1265 |
| BssECI | CCNNGG | 2 cut(s) | 210, 1337 |
| Bst2UI | CCWGG | 2 cut(s) | 211, 1338 |
| Bst4CI | ACNGT | 2 cut(s) | 680, 1495 |
| BstAUI | TGTACA | 1 cut(s) | 1265 |
| BstC8I | GCNNGC | 1 cut(s) | 358 |
| BstDEI | CTNAG | 6 cut(s) | 159, 261, 521, 669, 909, 1103 |
| BstF5I | GGATG | 3 cut(s) | 52, 492, 888 |
| BstHHI | GCGC | 1 cut(s) | 850 |
| BstMAI | GTCTC | 1 cut(s) | 803 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 644, 746, 974, 1108, 1412 |
| BstNI | CCWGG | 2 cut(s) | 211, 1338 |
| BstNSI | RCATGY | 1 cut(s) | 1279 |
| BstSCI | CCNGG | 2 cut(s) | 209, 1336 |
| BstSLI | GKGCMC | 1 cut(s) | 1296 |
| BstV1I | GCAGC | 1 cut(s) | 709 |
| BstV2I | GAAGAC | 1 cut(s) | 1346 |
| BstX2I | RGATCY | 2 cut(s) | 154, 897 |
| BstYI | RGATCY | 2 cut(s) | 154, 897 |
| BsuRI | GGCC | 4 cut(s) | 31, 182, 299, 1049 |
| BtsCI | GGATG | 3 cut(s) | 52, 492, 888 |
| Cac8I | GCNNGC | 1 cut(s) | 358 |
| CfoI | GCGC | 1 cut(s) | 850 |
| Cfr13I | GGNCC | 3 cut(s) | 189, 755, 1115 |
| Csp6I | GTAC | 3 cut(s) | 884, 1213, 1266 |
| CviAII | CATG | 4 cut(s) | 186, 770, 971, 1276 |
| CviQI | GTAC | 3 cut(s) | 884, 1213, 1266 |
| DdeI | CTNAG | 6 cut(s) | 159, 261, 521, 669, 909, 1103 |
| DraI | TTTAAA | 1 cut(s) | 1522 |
| DraIII | CACNNNGTG | 1 cut(s) | 1539 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1249 |
| EaeI | YGGCCR | 1 cut(s) | 297 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1249 |
| Ecl136II | GAGCTC | 1 cut(s) | 612 |
| Eco147I | AGGCCT | 2 cut(s) | 182, 1049 |
| Eco24I | GRGCYC | 1 cut(s) | 614 |
| Eco47I | GGWCC | 3 cut(s) | 189, 755, 1115 |
| Eco53kI | GAGCTC | 1 cut(s) | 612 |
| Eco57I | CTGAAG | 2 cut(s) | 171, 597 |
| EcoICRI | GAGCTC | 1 cut(s) | 612 |
| EcoO109I | RGGNCCY | 1 cut(s) | 755 |
| EcoRII | CCWGG | 2 cut(s) | 209, 1336 |
| EcoT22I | ATGCAT | 1 cut(s) | 1515 |
| EcoT38I | GRGCYC | 1 cut(s) | 614 |
| FaeI | CATG | 4 cut(s) | 189, 773, 974, 1279 |
| FaqI | GGGAC | 2 cut(s) | 473, 1304 |
| FatI | CATG | 4 cut(s) | 185, 769, 970, 1275 |
| FbaI | TGATCA | 3 cut(s) | 70, 919, 1473 |
| FblI | GTMKAC | 2 cut(s) | 341, 1253 |
| Fnu4HI | GCNGC | 2 cut(s) | 720, 723 |
| FokI | GGATG | 3 cut(s) | 39, 479, 875 |
| FriOI | GRGCYC | 1 cut(s) | 614 |
| Fsp4HI | GCNGC | 2 cut(s) | 720, 723 |
| FspBI | CTAG | 3 cut(s) | 231, 813, 1573 |
| FspI | TGCGCA | 1 cut(s) | 849 |
| GlaI | GCGC | 1 cut(s) | 849 |
| GluI | GCNGC | 2 cut(s) | 720, 723 |
| GsaI | CCCAGC | 2 cut(s) | 459, 1461 |
| HaeIII | GGCC | 4 cut(s) | 31, 182, 299, 1049 |
| HhaI | GCGC | 1 cut(s) | 850 |
| Hin1II | CATG | 4 cut(s) | 189, 773, 974, 1279 |
| Hin6I | GCGC | 1 cut(s) | 848 |
| HinP1I | GCGC | 1 cut(s) | 848 |
| HindIII | AAGCTT | 2 cut(s) | 1100, 1436 |
| HinfI | GANTC | 7 cut(s) | 35, 92, 338, 368, 461, 1148, 1317 |
| HphI | GGTGA | 3 cut(s) | 629, 661, 679 |
| Hpy166II | GTNNAC | 5 cut(s) | 342, 1213, 1254, 1268, 1294 |
| Hpy188I | TCNGA | 7 cut(s) | 70, 97, 486, 577, 862, 1282, 1473 |
| Hpy8I | GTNNAC | 5 cut(s) | 342, 1213, 1254, 1268, 1294 |
| HpyAV | CCTTC | 1 cut(s) | 907 |
| HpyCH4III | ACNGT | 2 cut(s) | 680, 1495 |
| HpyCH4V | TGCA | 7 cut(s) | 536, 827, 968, 1294, 1325, 1513, 1542 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 644, 746, 974, 1108, 1412 |
| HpyF3I | CTNAG | 6 cut(s) | 159, 261, 521, 669, 909, 1103 |
| Hsp92II | CATG | 4 cut(s) | 189, 773, 974, 1279 |
| HspAI | GCGC | 1 cut(s) | 848 |
| Ksp22I | TGATCA | 3 cut(s) | 70, 919, 1473 |
| LmnI | GCTCC | 1 cut(s) | 319 |
| Lsp1109I | GCAGC | 1 cut(s) | 709 |
| MaeI | CTAG | 3 cut(s) | 231, 813, 1573 |
| MaeIII | GTNAC | 1 cut(s) | 649 |
| MbiI | CCGCTC | 1 cut(s) | 25 |
| MboII | GAAGA | 8 cut(s) | 164, 321, 590, 593, 595, 719, 1129, 1346 |
| MflI | RGATCY | 2 cut(s) | 154, 897 |
| MhlI | GDGCHC | 3 cut(s) | 566, 614, 1296 |
| MlsI | TGGCCA | 1 cut(s) | 299 |
| MluNI | TGGCCA | 1 cut(s) | 299 |
| MlyI | GAGTC | 6 cut(s) | 86, 347, 377, 455, 1142, 1326 |
| MmeI | TCCRAC | 5 cut(s) | 227, 1014, 1060, 1142, 1553 |
| Mox20I | TGGCCA | 1 cut(s) | 299 |
| Mph1103I | ATGCAT | 1 cut(s) | 1515 |
| MscI | TGGCCA | 1 cut(s) | 299 |
| MseI | TTAA | 8 cut(s) | 129, 303, 377, 441, 714, 1239, 1272, 1521 |
| Msp20I | TGGCCA | 1 cut(s) | 299 |
| MspA1I | CMGCKG | 2 cut(s) | 508, 722 |
| MspR9I | CCNGG | 2 cut(s) | 211, 1338 |
| MvaI | CCWGG | 2 cut(s) | 211, 1338 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 644, 746, 974, 1108, 1412 |
| NlaIII | CATG | 4 cut(s) | 189, 773, 974, 1279 |
| NlaIV | GGNNCC | 2 cut(s) | 756, 1084 |
| NmuCI | GTSAC | 1 cut(s) | 649 |
| NsbI | TGCGCA | 1 cut(s) | 849 |
| NsiI | ATGCAT | 1 cut(s) | 1515 |
| NspI | RCATGY | 1 cut(s) | 1279 |
| PceI | AGGCCT | 2 cut(s) | 182, 1049 |
| PciI | ACATGT | 1 cut(s) | 1275 |
| PfeI | GAWTC | 1 cut(s) | 35 |
| PkrI | GCNGC | 2 cut(s) | 721, 724 |
| PleI | GAGTC | 6 cut(s) | 86, 346, 376, 455, 1142, 1325 |
| PpsI | GAGTC | 6 cut(s) | 86, 346, 376, 455, 1142, 1325 |
| PpuMI | RGGWCCY | 1 cut(s) | 755 |
| PscI | ACATGT | 1 cut(s) | 1275 |
| PshBI | ATTAAT | 1 cut(s) | 303 |
| Psp124BI | GAGCTC | 1 cut(s) | 614 |
| Psp5II | RGGWCCY | 1 cut(s) | 755 |
| Psp6I | CCWGG | 2 cut(s) | 209, 1336 |
| PspFI | CCCAGC | 2 cut(s) | 455, 1457 |
| PspGI | CCWGG | 2 cut(s) | 209, 1336 |
| PspN4I | GGNNCC | 2 cut(s) | 756, 1084 |
| PspPI | GGNCC | 3 cut(s) | 189, 755, 1115 |
| PspPPI | RGGWCCY | 1 cut(s) | 755 |
| PsuI | RGATCY | 2 cut(s) | 154, 897 |
| RsaI | GTAC | 3 cut(s) | 885, 1214, 1267 |
| RsaNI | GTAC | 3 cut(s) | 884, 1213, 1266 |
| SacI | GAGCTC | 1 cut(s) | 614 |
| SaqAI | TTAA | 8 cut(s) | 129, 303, 377, 441, 714, 1239, 1272, 1521 |
| SatI | GCNGC | 2 cut(s) | 720, 723 |
| Sau96I | GGNCC | 3 cut(s) | 189, 755, 1115 |
| SchI | GAGTC | 6 cut(s) | 86, 347, 377, 455, 1142, 1326 |
| ScrFI | CCNGG | 2 cut(s) | 211, 1338 |
| SduI | GDGCHC | 3 cut(s) | 566, 614, 1296 |
| SinI | GGWCC | 3 cut(s) | 189, 755, 1115 |
| SmlI | CTYRAG | 2 cut(s) | 527, 1028 |
| SmoI | CTYRAG | 2 cut(s) | 527, 1028 |
| SseBI | AGGCCT | 2 cut(s) | 182, 1049 |
| SsiI | CCGC | 4 cut(s) | 25, 508, 647, 720 |
| SspMI | CTAG | 3 cut(s) | 231, 813, 1573 |
| SstI | GAGCTC | 1 cut(s) | 614 |
| StuI | AGGCCT | 2 cut(s) | 182, 1049 |
| StyD4I | CCNGG | 2 cut(s) | 209, 1336 |
| TaaI | ACNGT | 2 cut(s) | 680, 1495 |
| TaqI | TCGA | 2 cut(s) | 58, 112 |
| TaqII | GACCGA | 1 cut(s) | 206 |
| TatI | WGTACW | 3 cut(s) | 883, 1212, 1265 |
| TauI | GCSGC | 1 cut(s) | 722 |
| TfiI | GAWTC | 1 cut(s) | 35 |
| Tru1I | TTAA | 8 cut(s) | 129, 303, 377, 441, 714, 1239, 1272, 1521 |
| Tru9I | TTAA | 8 cut(s) | 129, 303, 377, 441, 714, 1239, 1272, 1521 |
| TseFI | GTSAC | 1 cut(s) | 649 |
| TseI | GCWGC | 1 cut(s) | 722 |
| Tsp45I | GTSAC | 1 cut(s) | 649 |
| TspDTI | ATGAA | 7 cut(s) | 114, 470, 689, 758, 773, 827, 971 |
| TspGWI | ACGGA | 1 cut(s) | 361 |
| VneI | GTGCAC | 1 cut(s) | 1292 |
| VpaK11BI | GGWCC | 3 cut(s) | 189, 755, 1115 |
| VspI | ATTAAT | 1 cut(s) | 303 |
| XapI | RAATTY | 4 cut(s) | 278, 788, 1011, 1523 |
| XceI | RCATGY | 1 cut(s) | 1279 |
| XmiI | GTMKAC | 2 cut(s) | 341, 1253 |
| XspI | CTAG | 3 cut(s) | 231, 813, 1573 |
| Zsp2I | ATGCAT | 1 cut(s) | 1515 |