Rmu_sc0001260.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001260.1
OG0000147
Physical Location & Seq
Forward (+)
172 .. 792
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001260.1_g000001.1.cds

Sequence Viewer

Length: 621 bp
atgagttttggtataggatacaatgtcaaccccatcaattctgcttatggtggaaaactgagcataaggtggctatccttgattactcaaagtacgtactttattgatactatcattagcactccaagtaatggtagtacggtaagagtaacatggatgtacggaccttcatactatacagataaggttgatttctggagctcctggaactataagagtcataatgatagcaacccttggttagtgatcagtgaccttaatgaattgcttttccagcatgggagagaaggtggtgttgcttgggatacaaatagaagatgtttcttaggctcttttattttaactaatgctcttttagatatagggttcaagggccaaaggttcacttgggctcaaaaggaggataatgtggtggtatcacaagaaagaattgatcgcagtctagtatgccagaattggttattgaattggcccgatacttaccttactcacctaactagagttgggtttgaccacaacccaattcttcttgaaacaaacccggtgcaagtgaaaaggaagtcctcatttaaatttgatgcctattgggctgatgatgatgaaagtttcccctattgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

206

Amino Acids

23.88

Weight (kDa)

5.76

Isoelectric Point (pI)

25.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 131
AcsI RAATTY 1 cut(s) 572
AfaI GTAC 4 cut(s) 94, 98, 139, 161
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 3 cut(s) 370, 466, 533
AjnI CCWGG 1 cut(s) 203
AluBI AGCT 1 cut(s) 201
AluI AGCT 1 cut(s) 201
Alw21I GWGCWC 1 cut(s) 203
AoxI GGCC 2 cut(s) 373, 470
ApoI RAATTY 1 cut(s) 572
AspS9I GGNCC 3 cut(s) 164, 373, 471
AsuC2I CCSGG 1 cut(s) 542
AsuHPI GGTGA 1 cut(s) 482
AvaII GGWCC 1 cut(s) 164
BanII GRGCYC 2 cut(s) 203, 394
Bbv12I GWGCWC 1 cut(s) 203
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 205
BciVI GTATCC 2 cut(s) 11, 298
BclI TGATCA 1 cut(s) 246
BcnI CCSGG 1 cut(s) 542
BfaI CTAG 2 cut(s) 443, 498
BfuI GTATCC 2 cut(s) 11, 298
BglI GCCNNNNNGGC 1 cut(s) 587
Bme1390I CCNGG 2 cut(s) 205, 542
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 3 cut(s) 164, 373, 471
BmrFI CCNGG 2 cut(s) 205, 542
BmsI GCATC 1 cut(s) 568
BpmI CTGGAG 1 cut(s) 217
BpuMI CCSGG 1 cut(s) 542
BsaAI YACGTR 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 236
BsaXI ACNNNNNCTCC 2 cut(s) 274, 304
Bsc4I CCNNNNNNNGG 1 cut(s) 131
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 1 cut(s) 236
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMII CTCAG 1 cut(s) 50
BshFI GGCC 2 cut(s) 375, 472
BsiHKAI GWGCWC 1 cut(s) 203
BsiSI CCGG 1 cut(s) 542
BslI CCNNNNNNNGG 1 cut(s) 131
BsnI GGCC 2 cut(s) 375, 472
Bsp1286I GDGCHC 2 cut(s) 203, 394
Bsp143I GATC 2 cut(s) 246, 433
BspANI GGCC 2 cut(s) 375, 472
BspCNI CTCAG 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 236
BssMI GATC 2 cut(s) 246, 433
BssT1I CCWWGG 1 cut(s) 236
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 142
BstBAI YACGTR 1 cut(s) 96
BstDEI CTNAG 2 cut(s) 59, 325
BstF5I GGATG 1 cut(s) 162
BstKTI GATC 2 cut(s) 249, 436
BstMBI GATC 2 cut(s) 246, 433
BstMWI GCNNNNNNNGC 2 cut(s) 274, 587
BstNI CCWGG 1 cut(s) 205
BstSCI CCNGG 2 cut(s) 203, 540
BstSNI TACGTA 1 cut(s) 96
BsuI GTATCC 2 cut(s) 11, 298
BsuRI GGCC 2 cut(s) 375, 472
BtsCI GGATG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 256
Cfr13I GGNCC 3 cut(s) 164, 373, 471
Csp6I GTAC 4 cut(s) 93, 97, 138, 160
CviAII CATG 2 cut(s) 153, 278
CviJI RGCY 7 cut(s) 73, 201, 330, 375, 392, 472, 590
CviKI_1 RGCY 7 cut(s) 73, 201, 330, 375, 392, 472, 590
CviQI GTAC 4 cut(s) 93, 97, 138, 160
DdeI CTNAG 2 cut(s) 59, 325
DpnI GATC 2 cut(s) 248, 435
DpnII GATC 2 cut(s) 246, 433
DraI TTTAAA 1 cut(s) 571
Ecl136II GAGCTC 1 cut(s) 201
Eco105I TACGTA 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 236
Eco24I GRGCYC 2 cut(s) 203, 394
Eco47I GGWCC 1 cut(s) 164
Eco53kI GAGCTC 1 cut(s) 201
EcoICRI GAGCTC 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 236
EcoT38I GRGCYC 2 cut(s) 203, 394
ErhI CCWWGG 1 cut(s) 236
FaeI CATG 2 cut(s) 156, 281
FalI AAGNNNNNCTT 2 cut(s) 370, 402
FatI CATG 2 cut(s) 152, 277
FbaI TGATCA 1 cut(s) 246
FokI GGATG 1 cut(s) 169
FriOI GRGCYC 2 cut(s) 203, 394
FspBI CTAG 2 cut(s) 443, 498
GsuI CTGGAG 1 cut(s) 217
HaeIII GGCC 2 cut(s) 375, 472
HapII CCGG 1 cut(s) 542
Hin1II CATG 2 cut(s) 156, 281
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 1 cut(s) 217
HpaII CCGG 1 cut(s) 542
HphI GGTGA 1 cut(s) 482
Hpy166II GTNNAC 2 cut(s) 28, 384
Hpy188III TCNNGA 2 cut(s) 196, 530
Hpy8I GTNNAC 2 cut(s) 28, 384
HpyAV CCTTC 2 cut(s) 177, 281
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 1 cut(s) 547
HpyF10VI GCNNNNNNNGC 2 cut(s) 274, 587
HpyF3I CTNAG 2 cut(s) 59, 325
HpySE526I ACGT 1 cut(s) 95
Hsp92II CATG 2 cut(s) 156, 281
Ksp22I TGATCA 1 cut(s) 246
Kzo9I GATC 2 cut(s) 246, 433
LmnI GCTCC 2 cut(s) 198, 206
LpnPI CCDG 6 cut(s) 181, 190, 217, 287, 464, 555
LweI GCATC 1 cut(s) 568
MaeI CTAG 2 cut(s) 443, 498
MaeII ACGT 1 cut(s) 95
MaeIII GTNAC 2 cut(s) 148, 251
MalI GATC 2 cut(s) 248, 435
MboI GATC 2 cut(s) 246, 433
MboII GAAGA 2 cut(s) 327, 518
MhlI GDGCHC 2 cut(s) 203, 394
MluCI AATT 7 cut(s) 37, 263, 429, 454, 466, 522, 572
MlyI GAGTC 1 cut(s) 226
MnlI CCTC 2 cut(s) 394, 574
MseI TTAA 4 cut(s) 258, 341, 570, 619
MspI CCGG 1 cut(s) 542
MspR9I CCNGG 2 cut(s) 205, 542
MvaI CCWGG 1 cut(s) 205
MwoI GCNNNNNNNGC 2 cut(s) 274, 587
NciI CCSGG 1 cut(s) 542
NdeII GATC 2 cut(s) 246, 433
NlaIII CATG 2 cut(s) 156, 281
NmuCI GTSAC 1 cut(s) 251
PflMI CCANNNNNTGG 1 cut(s) 131
PfoI TCCNGGA 1 cut(s) 203
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
Ppu21I YACGTR 1 cut(s) 96
Psp124BI GAGCTC 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 203
PspGI CCWGG 1 cut(s) 203
PspPI GGNCC 3 cut(s) 164, 373, 471
RsaI GTAC 4 cut(s) 94, 98, 139, 161
RsaNI GTAC 4 cut(s) 93, 97, 138, 160
SacI GAGCTC 1 cut(s) 203
SaqAI TTAA 4 cut(s) 258, 341, 570, 619
Sau3AI GATC 2 cut(s) 246, 433
Sau96I GGNCC 3 cut(s) 164, 373, 471
SchI GAGTC 1 cut(s) 226
ScrFI CCNGG 2 cut(s) 205, 542
SduI GDGCHC 2 cut(s) 203, 394
SfaNI GCATC 1 cut(s) 568
SinI GGWCC 1 cut(s) 164
SmiI ATTTAAAT 1 cut(s) 571
SnaBI TACGTA 1 cut(s) 96
Sse9I AATT 7 cut(s) 37, 263, 429, 454, 466, 522, 572
SspMI CTAG 2 cut(s) 443, 498
SstI GAGCTC 1 cut(s) 203
StyD4I CCNGG 2 cut(s) 203, 540
StyI CCWWGG 1 cut(s) 236
SwaI ATTTAAAT 1 cut(s) 571
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 98
TasI AATT 7 cut(s) 37, 263, 429, 454, 466, 522, 572
Tru1I TTAA 4 cut(s) 258, 341, 570, 619
Tru9I TTAA 4 cut(s) 258, 341, 570, 619
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 3 cut(s) 159, 276, 615
TspGWI ACGGA 1 cut(s) 177
TspRI CASTG 1 cut(s) 256
Van91I CCANNNNNTGG 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 1 cut(s) 572
XspI CTAG 2 cut(s) 443, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.