RLG00000018128

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000147
Physical Location & Seq
Forward (+)
25589242 .. 25593362
4121 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018128

Sequence Viewer

Length: 882 bp
ATGTCTCAAGCAATTCTCTCAGATCACGCACCTAAACCTCGTCGCGGCCGCCCTCCTTCTGGTTCCGGTTCCGGTAAAAGTAAGGGTTCAGGCTGTCGGGGAAGACCAAGAAAGATCAGGTCTTCTGAAAGCTCCGTTTCCTTTGCCTCTCCTCAGGTTTTGTGTTTGGTTCAGGCTATGGTGTCTCCGATTACTGCCTCAATCCCTTTCTCCACTGCTCCAACTGTATCTTCACCTCTGGTTATCACTTCAGCTCCATCAGGTCAAGCGGAAGGTCCTCTTCATACTTGGTACCGCTATCAGCATGGGAGAGTAAATACAAAGGAGCGCCTTGATCGCTATTTAGCTAACTCAGAATGGTGCTCTTCTTATCCTAATTCTCAGGTGATAAATCTTTCGATTATTGGTTCGGACCATCTTCCACTTCTTATGGATTCCAATCCAAAGGTTTTACCTTTCCGGAAATGCTTTCGGTTTGAGCACATATGGACTTCTGTAGATTCTTGTGAACAAGTTATTGCACAAGCTTGGCTGAATGCCTCCTCCTCAATAGCAATGCCTAATTGGATAGCCAATTTGAAGTCCTGCAAGCAAGCTTTTACTCCAGATTCTAGATTGGTTGCATTTACAGCTTTTGATGCCTCTCTAGAATTCCTGTCCTCAAAGAAGAAGATAGATACTCAATTAGTCAAATCCTCTCTACGATCCAGACCACCACCAAAACCAAAATGGATTCCTCCTCTGCCTCAACAACTGAAGATAAATAGTGATGCTTCATGGACTTCTCAGTCTGTAGGTATGGCTGCTATCTCTAGAGATAGTACAGGACACGTGGTGGGGTGTTCACTCTTTCAGTTCAGCCCCAACTCCTCTCTATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

294

Amino Acids

32.06

Weight (kDa)

9.88

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 787
Acc65I GGTACC 1 cut(s) 291
AccB1I GGYRCC 1 cut(s) 291
AccII CGCG 1 cut(s) 45
AccIII TCCGGA 1 cut(s) 459
AciI CCGC 4 cut(s) 45, 49, 269, 295
AclWI GGATC 1 cut(s) 699
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 650
AcuI CTGAAG 2 cut(s) 234, 776
AcvI CACGTG 1 cut(s) 832
AdeI CACNNNGTG 1 cut(s) 835
AfaI GTAC 2 cut(s) 293, 823
AfiI CCNNNNNNNGG 3 cut(s) 44, 59, 876
AflIII ACRYGT 1 cut(s) 829
AgsI TTSAA 1 cut(s) 580
AjuI GAANNNNNNNTTGG 2 cut(s) 214, 246
AluBI AGCT 6 cut(s) 132, 254, 347, 527, 596, 632
AluI AGCT 6 cut(s) 132, 254, 347, 527, 596, 632
Alw21I GWGCWC 2 cut(s) 365, 483
Alw26I GTCTC 2 cut(s) 9, 189
AlwI GGATC 1 cut(s) 699
Aor13HI TCCGGA 1 cut(s) 459
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 803
ApoI RAATTY 1 cut(s) 650
Asp718I GGTACC 1 cut(s) 291
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 2 cut(s) 275, 412
AsuHPI GGTGA 2 cut(s) 225, 397
AvaII GGWCC 2 cut(s) 275, 412
AxyI CCTNAGG 1 cut(s) 153
BanI GGYRCC 1 cut(s) 291
BbrPI CACGTG 1 cut(s) 832
BbsI GAAGAC 2 cut(s) 109, 114
Bbv12I GWGCWC 2 cut(s) 365, 483
BbvI GCAGC 1 cut(s) 790
BccI CCATC 2 cut(s) 265, 423
BcoDI GTCTC 2 cut(s) 9, 189
BfaI CTAG 3 cut(s) 612, 647, 813
BfmI CTRYAG 2 cut(s) 495, 792
BfoI RGCGCY 1 cut(s) 331
BisI GCNGC 3 cut(s) 46, 49, 804
BlsI GCNGC 3 cut(s) 47, 50, 805
Bme18I GGWCC 2 cut(s) 275, 412
BmgT120I GGNCC 2 cut(s) 275, 412
BmiI GGNNCC 3 cut(s) 64, 70, 293
BmsI GCATC 2 cut(s) 628, 760
BpiI GAAGAC 2 cut(s) 109, 114
BpmI CTGGAG 1 cut(s) 588
BsaAI YACGTR 1 cut(s) 832
BsaBI GATNNNNATC 1 cut(s) 438
BsaWI WCCGGW 3 cut(s) 65, 71, 459
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 59, 876
Bse21I CCTNAGG 1 cut(s) 153
Bse3DI GCAATG 1 cut(s) 561
Bse8I GATNNNNATC 1 cut(s) 438
BseAI TCCGGA 1 cut(s) 459
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 3 cut(s) 44, 59, 876
BseMI GCAATG 1 cut(s) 561
BseMII CTCAG 5 cut(s) 33, 167, 366, 395, 800
BseRI GAGGAG 5 cut(s) 141, 532, 535, 729, 859
BseX3I CGGCCG 1 cut(s) 46
BseXI GCAGC 1 cut(s) 790
Bsh1236I CGCG 1 cut(s) 45
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 1 cut(s) 48
BshNI GGYRCC 1 cut(s) 291
BsiEI CGRYCG 1 cut(s) 49
BsiHKAI GWGCWC 2 cut(s) 365, 483
BsiSI CCGG 3 cut(s) 66, 72, 460
BslI CCNNNNNNNGG 3 cut(s) 44, 59, 876
BsmAI GTCTC 2 cut(s) 9, 189
BsmI GAATGC 1 cut(s) 541
BsnI GGCC 1 cut(s) 48
Bsp1286I GDGCHC 2 cut(s) 365, 483
Bsp13I TCCGGA 1 cut(s) 459
Bsp143I GATC 4 cut(s) 22, 114, 334, 704
BspACI CCGC 4 cut(s) 45, 49, 269, 295
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 5 cut(s) 32, 166, 365, 394, 799
BspEI TCCGGA 1 cut(s) 459
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 3 cut(s) 64, 70, 293
BspPI GGATC 1 cut(s) 699
BspQI GCTCTTC 1 cut(s) 370
BspT107I GGYRCC 1 cut(s) 291
BsrDI GCAATG 1 cut(s) 561
BssMI GATC 4 cut(s) 22, 114, 334, 704
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 2 cut(s) 285, 370
BstBAI YACGTR 1 cut(s) 832
BstC8I GCNNGC 2 cut(s) 590, 594
BstDEI CTNAG 5 cut(s) 19, 153, 352, 381, 786
BstFNI CGCG 1 cut(s) 45
BstH2I RGCGCY 1 cut(s) 331
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 4 cut(s) 25, 117, 337, 707
BstMAI GTCTC 2 cut(s) 9, 189
BstMBI GATC 4 cut(s) 22, 114, 334, 704
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 3 cut(s) 336, 629, 638
BstSFI CTRYAG 2 cut(s) 495, 792
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 790
BstV2I GAAGAC 2 cut(s) 109, 114
BstZI CGGCCG 1 cut(s) 46
Bsu36I CCTNAGG 1 cut(s) 153
BsuRI GGCC 1 cut(s) 48
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 2 cut(s) 590, 594
CciNI GCGGCCGC 1 cut(s) 46
CfoI GCGC 1 cut(s) 330
Cfr13I GGNCC 2 cut(s) 275, 412
Csp6I GTAC 2 cut(s) 292, 822
CviAII CATG 2 cut(s) 305, 777
CviQI GTAC 2 cut(s) 292, 822
DdeI CTNAG 5 cut(s) 19, 153, 352, 381, 786
DpnI GATC 4 cut(s) 24, 116, 336, 706
DpnII GATC 4 cut(s) 22, 114, 334, 704
DraIII CACNNNGTG 1 cut(s) 835
DrdI GACNNNNNNGTC 1 cut(s) 787
DseDI GACNNNNNNGTC 1 cut(s) 787
EaeI YGGCCR 1 cut(s) 46
EagI CGGCCG 1 cut(s) 46
Eam1104I CTCTTC 2 cut(s) 285, 370
EarI CTCTTC 2 cut(s) 285, 370
EclXI CGGCCG 1 cut(s) 46
Eco47I GGWCC 2 cut(s) 275, 412
Eco52I CGGCCG 1 cut(s) 46
Eco57I CTGAAG 2 cut(s) 234, 776
Eco72I CACGTG 1 cut(s) 832
Eco81I CCTNAGG 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 275
EcoRI GAATTC 1 cut(s) 650
FaeI CATG 2 cut(s) 308, 780
FaiI YATR 9 cut(s) 179, 285, 306, 431, 485, 487, 778, 800, 877
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FatI CATG 2 cut(s) 304, 776
FauNDI CATATG 1 cut(s) 485
Fnu4HI GCNGC 3 cut(s) 46, 49, 804
Fsp4HI GCNGC 3 cut(s) 46, 49, 804
FspBI CTAG 3 cut(s) 612, 647, 813
GlaI GCGC 1 cut(s) 329
GluI GCNGC 3 cut(s) 46, 49, 804
GsuI CTGGAG 1 cut(s) 588
HaeII RGCGCY 1 cut(s) 331
HaeIII GGCC 1 cut(s) 48
HapII CCGG 3 cut(s) 66, 72, 460
HhaI GCGC 1 cut(s) 330
Hin1II CATG 2 cut(s) 308, 780
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HindIII AAGCTT 2 cut(s) 525, 594
HinfI GANTC 4 cut(s) 434, 500, 608, 733
HpaII CCGG 3 cut(s) 66, 72, 460
HphI GGTGA 2 cut(s) 225, 397
Hpy166II GTNNAC 2 cut(s) 509, 845
Hpy188I TCNGA 5 cut(s) 22, 127, 189, 355, 412
Hpy188III TCNNGA 6 cut(s) 460, 605, 612, 647, 708, 813
Hpy8I GTNNAC 2 cut(s) 509, 845
Hpy99I CGWCG 1 cut(s) 45
HpyAV CCTTC 2 cut(s) 66, 266
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 831
HpyCH4V TGCA 3 cut(s) 521, 588, 623
HpyF10VI GCNNNNNNNGC 3 cut(s) 336, 629, 638
HpyF3I CTNAG 5 cut(s) 19, 153, 352, 381, 786
HpySE526I ACGT 1 cut(s) 831
Hsp92II CATG 2 cut(s) 308, 780
HspAI GCGC 1 cut(s) 328
Kpn2I TCCGGA 1 cut(s) 459
KpnI GGTACC 1 cut(s) 295
Kzo9I GATC 4 cut(s) 22, 114, 334, 704
LguI GCTCTTC 1 cut(s) 370
LmnI GCTCC 4 cut(s) 137, 223, 259, 325
Lsp1109I GCAGC 1 cut(s) 790
LweI GCATC 2 cut(s) 628, 760
MaeI CTAG 3 cut(s) 612, 647, 813
MaeII ACGT 1 cut(s) 831
MalI GATC 4 cut(s) 24, 116, 336, 706
MboI GATC 4 cut(s) 22, 114, 334, 704
MboII GAAGA 9 cut(s) 114, 114, 222, 272, 357, 410, 679, 682, 769
MhlI GDGCHC 2 cut(s) 365, 483
MluCI AATT 6 cut(s) 12, 376, 562, 574, 650, 683
MmeI TCCRAC 1 cut(s) 245
MroI TCCGGA 1 cut(s) 459
MspI CCGG 3 cut(s) 66, 72, 460
Mva1269I GAATGC 1 cut(s) 541
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 3 cut(s) 336, 629, 638
NdeI CATATG 1 cut(s) 485
NdeII GATC 4 cut(s) 22, 114, 334, 704
NlaIII CATG 2 cut(s) 308, 780
NlaIV GGNNCC 3 cut(s) 64, 70, 293
NotI GCGGCCGC 1 cut(s) 46
PciSI GCTCTTC 1 cut(s) 370
PctI GAATGC 1 cut(s) 541
PfeI GAWTC 4 cut(s) 434, 500, 608, 733
PkrI GCNGC 3 cut(s) 47, 50, 805
PmaCI CACGTG 1 cut(s) 832
PmlI CACGTG 1 cut(s) 832
Ppu21I YACGTR 1 cut(s) 832
PpuMI RGGWCCY 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 275
PspCI CACGTG 1 cut(s) 832
PspN4I GGNNCC 3 cut(s) 64, 70, 293
PspPI GGNCC 2 cut(s) 275, 412
PspPPI RGGWCCY 1 cut(s) 275
RsaI GTAC 2 cut(s) 293, 823
RsaNI GTAC 2 cut(s) 292, 822
SapI GCTCTTC 1 cut(s) 370
SatI GCNGC 3 cut(s) 46, 49, 804
Sau3AI GATC 4 cut(s) 22, 114, 334, 704
Sau96I GGNCC 2 cut(s) 275, 412
SduI GDGCHC 2 cut(s) 365, 483
SfaNI GCATC 2 cut(s) 628, 760
SfcI CTRYAG 2 cut(s) 495, 792
SinI GGWCC 2 cut(s) 275, 412
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
Sse9I AATT 6 cut(s) 12, 376, 562, 574, 650, 683
SsiI CCGC 4 cut(s) 45, 49, 269, 295
SspMI CTAG 3 cut(s) 612, 647, 813
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 1 cut(s) 834
TaqI TCGA 1 cut(s) 398
TasI AATT 6 cut(s) 12, 376, 562, 574, 650, 683
TatI WGTACW 1 cut(s) 821
TauI GCSGC 2 cut(s) 48, 51
TfiI GAWTC 4 cut(s) 434, 500, 608, 733
TscAI CASTG 1 cut(s) 220
TseI GCWGC 1 cut(s) 803
TspDTI ATGAA 2 cut(s) 272, 765
TspGWI ACGGA 1 cut(s) 124
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 2 cut(s) 275, 412
XapI RAATTY 1 cut(s) 650
XbaI TCTAGA 3 cut(s) 611, 646, 812
XcmI CCANNNNNNNNNTGG 1 cut(s) 726
XspI CTAG 3 cut(s) 612, 647, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.