Rorug01G0111300

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000147
Physical Location & Seq
Reverse (-)
19851907 .. 19856705
4799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0111300.1

Sequence Viewer

Length: 1158 bp
ATGAAGTCTCTTTCTCCGTCCGCAACAGTCACCATATCCAACAGCTACTCATTCAGAGCTAACAAAACCCACTCCCAAACCCCTTGTACCAACCTCAGATTCCCCATCTCACAAACCCATCAAAACCCATCAACTTTTTGTCTCAGTTGTTGCAACAAGTGTTTTTCTATTAAAGCATGTGCAGCTTCAACATCAACAGCACCCTCAGCTTCAACTTCCTGCCACTGGATGGTGCTCATGGAGACTCCTTCACAAGGGGTCATTTCCAAACAACAAGTTATTGAATACTATGTTAAAACCCTTCAAAGAGTTTTGGGCAATGAGAAGGATGCTCATATGTGTATATATGATGCTTCTTGGGATACCCATTTTGGCTTTTGCTGTGATGTTGATGATGAAACTTCCCAGAAGCTTGCACGTTTACCGGGGGTTTTATCAGTTAAGCCTGACCCAGATTTTGGTTCTGTGAAAAAGGATTACAGTTTTTCAAATGTTCAAAGTGCAAGTACTCTGTTATTTCCACTTGGGAATACCAAACACTGGCTTGTTCGAATGGATAAACCGGAGATTGGCGTTGTTACAAAGGCGCAAATGGTTGATTATTATGCTCAAATACTAACAAAGGTCTTGGGAAATGAGAAAGATGCACAAATGTGTATATATCATGTTTCCTGGAAATCTAACTTTGGCTTCTGTTGTGAACTTGATGAAGAATCTGCAAGCAATCTAGCAAGTGTTCCTGGTGTTTTATCTGTTCAGCCAGACAAGAGTTATAACTCAGAAAATAAAGACTATGGAGGTAATGACATAAAGAAATCTAAGGATGTGTCAATCTCTGCGGAGGCAAGTCAAACAACCCCCACAAGAACAAAGAAGCTTTTTGTGACTGGCTTATCATTTTATACATCTGAGAAAACCCTCCGAGAAGCATTTGAAGGCTTTGGTCAGCTTGTTGAAGTAAAAATAATAATGGACAAGATTTCTAAAAGGTCCAAAGGCTATGCATTCATAGAATACACTACAGAGGAAGCTGCTGCTGCTGCACTCAATGAGATGAATGGCAAGATCATTAATGGCTGGATGATAGTTGTTGATGTTGCCAAGACTAGCCCTCCAAGATATAGCAGGGGCCAAAGCAGATCAGCAGCAACCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

385

Amino Acids

42.56

Weight (kDa)

8.45

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORF_dom PF21864 74 - 164 2.6e-39 Multiple organellar RNA editing factor 1, MORF domain
MORF_dom PF21864 179 - 269 1e-39 Multiple organellar RNA editing factor 1, MORF domain
RRM_1 PF00076 293 - 359 3.1e-20 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 774
AccB7I CCANNNNNTGG 3 cut(s) 229, 458, 540
AciI CCGC 2 cut(s) 21, 839
AfaI GTAC 2 cut(s) 88, 508
AfiI CCNNNNNNNGG 6 cut(s) 225, 229, 254, 458, 540, 569
AgsI TTSAA 8 cut(s) 189, 213, 284, 305, 489, 497, 935, 956
AjnI CCWGG 2 cut(s) 671, 739
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AleI CACNNNNGTG 1 cut(s) 652
AluBI AGCT 8 cut(s) 45, 59, 185, 209, 412, 877, 949, 1031
AluI AGCT 8 cut(s) 45, 59, 185, 209, 412, 877, 949, 1031
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 3 cut(s) 12, 146, 236
AoxI GGCC 1 cut(s) 1129
ApeKI GCWGC 6 cut(s) 182, 1031, 1034, 1037, 1040, 1145
ArsI GACNNNNNNTTYG 2 cut(s) 440, 472
AseI ATTAAT 1 cut(s) 1071
AspLEI GCGC 1 cut(s) 589
AspS9I GGNCC 2 cut(s) 990, 1129
AsuC2I CCSGG 1 cut(s) 426
AsuHPI GGTGA 1 cut(s) 22
AsuII TTCGAA 1 cut(s) 550
AvaII GGWCC 1 cut(s) 990
Bbv12I GWGCWC 1 cut(s) 237
BbvCI CCTCAGC 1 cut(s) 205
BbvI GCAGC 5 cut(s) 194, 1018, 1021, 1024, 1027
BccI CCATC 4 cut(s) 113, 126, 136, 223
BciT130I CCWGG 2 cut(s) 673, 741
BciVI GTATCC 1 cut(s) 355
BcnI CCSGG 1 cut(s) 426
BcoDI GTCTC 3 cut(s) 12, 146, 236
BfaI CTAG 2 cut(s) 728, 1107
BfmI CTRYAG 1 cut(s) 1020
BfuI GTATCC 1 cut(s) 355
BisI GCNGC 6 cut(s) 183, 1032, 1035, 1038, 1041, 1146
BlsI GCNGC 6 cut(s) 184, 1033, 1036, 1039, 1042, 1147
BmcAI AGTACT 1 cut(s) 508
Bme1390I CCNGG 3 cut(s) 426, 673, 741
Bme18I GGWCC 1 cut(s) 990
BmgT120I GGNCC 2 cut(s) 990, 1129
BmiI GGNNCC 1 cut(s) 1130
BmrFI CCNGG 3 cut(s) 426, 673, 741
BmsI GCATC 3 cut(s) 319, 340, 634
Bpu10I CCTNAGC 1 cut(s) 205
Bpu14I TTCGAA 1 cut(s) 550
BpuMI CCSGG 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 425
BsaWI WCCGGW 1 cut(s) 562
BsaXI ACNNNNNCTCC 2 cut(s) 1096, 1126
Bsc4I CCNNNNNNNGG 6 cut(s) 225, 229, 254, 458, 540, 569
Bse1I ACTGG 3 cut(s) 230, 545, 892
Bse3DI GCAATG 1 cut(s) 325
BseBI CCWGG 2 cut(s) 673, 741
BseDI CCNNGG 1 cut(s) 425
BseGI GGATG 4 cut(s) 234, 334, 829, 1086
BseLI CCNNNNNNNGG 6 cut(s) 225, 229, 254, 458, 540, 569
BseMI GCAATG 1 cut(s) 325
BseMII CTCAG 5 cut(s) 109, 157, 219, 792, 900
BseNI ACTGG 3 cut(s) 230, 545, 892
BseXI GCAGC 5 cut(s) 194, 1018, 1021, 1024, 1027
BsgI GTGCAG 2 cut(s) 201, 1026
BshFI GGCC 1 cut(s) 1131
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 2 cut(s) 425, 563
BslI CCNNNNNNNGG 6 cut(s) 225, 229, 254, 458, 540, 569
BsmAI GTCTC 3 cut(s) 12, 146, 236
BsmI GAATGC 1 cut(s) 1004
BsnI GGCC 1 cut(s) 1131
Bsp119I TTCGAA 1 cut(s) 550
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 2 cut(s) 1065, 1139
BspACI CCGC 2 cut(s) 21, 839
BspANI GGCC 1 cut(s) 1131
BspCNI CTCAG 5 cut(s) 108, 156, 218, 791, 901
BspLI GGNNCC 1 cut(s) 1130
BspT104I TTCGAA 1 cut(s) 550
BsrDI GCAATG 1 cut(s) 325
BsrI ACTGG 3 cut(s) 230, 545, 892
BssECI CCNNGG 1 cut(s) 425
BssMI GATC 2 cut(s) 1065, 1139
Bst2UI CCWGG 2 cut(s) 673, 741
Bst4CI ACNGT 2 cut(s) 28, 482
BstBI TTCGAA 1 cut(s) 550
BstC8I GCNNGC 2 cut(s) 414, 721
BstDEI CTNAG 6 cut(s) 95, 143, 205, 778, 819, 909
BstENI CCTNNNNNAGG 1 cut(s) 252
BstF5I GGATG 4 cut(s) 234, 334, 829, 1086
BstHHI GCGC 1 cut(s) 589
BstKTI GATC 2 cut(s) 1068, 1142
BstMAI GTCTC 3 cut(s) 12, 146, 236
BstMBI GATC 2 cut(s) 1065, 1139
BstMWI GCNNNNNNNGC 4 cut(s) 182, 206, 1037, 1040
BstNI CCWGG 2 cut(s) 673, 741
BstNSI RCATGY 1 cut(s) 180
BstSCI CCNGG 3 cut(s) 424, 671, 739
BstSFI CTRYAG 1 cut(s) 1020
BstV1I GCAGC 5 cut(s) 194, 1018, 1021, 1024, 1027
BsuI GTATCC 1 cut(s) 355
BsuRI GGCC 1 cut(s) 1131
BtsCI GGATG 4 cut(s) 234, 334, 829, 1086
BtsIMutI CAGTG 2 cut(s) 223, 538
Cac8I GCNNGC 2 cut(s) 414, 721
CfoI GCGC 1 cut(s) 589
Cfr13I GGNCC 2 cut(s) 990, 1129
Csp6I GTAC 2 cut(s) 87, 507
CviAII CATG 3 cut(s) 177, 238, 665
CviQI GTAC 2 cut(s) 87, 507
DdeI CTNAG 6 cut(s) 95, 143, 205, 778, 819, 909
DpnI GATC 2 cut(s) 1067, 1141
DpnII GATC 2 cut(s) 1065, 1139
Eco47I GGWCC 1 cut(s) 990
EcoNI CCTNNNNNAGG 1 cut(s) 252
EcoRII CCWGG 2 cut(s) 671, 739
EcoT22I ATGCAT 1 cut(s) 1006
FaeI CATG 3 cut(s) 180, 241, 668
FatI CATG 3 cut(s) 176, 237, 664
FauNDI CATATG 1 cut(s) 336
Fnu4HI GCNGC 6 cut(s) 183, 1032, 1035, 1038, 1041, 1146
FokI GGATG 4 cut(s) 241, 341, 836, 1093
Fsp4HI GCNGC 6 cut(s) 183, 1032, 1035, 1038, 1041, 1146
FspBI CTAG 2 cut(s) 728, 1107
GlaI GCGC 1 cut(s) 588
GluI GCNGC 6 cut(s) 183, 1032, 1035, 1038, 1041, 1146
HaeIII GGCC 1 cut(s) 1131
HapII CCGG 2 cut(s) 425, 563
HhaI GCGC 1 cut(s) 589
Hin1II CATG 3 cut(s) 180, 241, 668
Hin6I GCGC 1 cut(s) 587
HinP1I GCGC 1 cut(s) 587
HindIII AAGCTT 2 cut(s) 410, 875
HinfI GANTC 3 cut(s) 99, 244, 713
HpaII CCGG 2 cut(s) 425, 563
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 2 cut(s) 422, 701
Hpy188I TCNGA 5 cut(s) 56, 98, 781, 910, 923
Hpy8I GTNNAC 2 cut(s) 422, 701
HpyAV CCTTC 4 cut(s) 258, 311, 319, 929
HpyCH4III ACNGT 2 cut(s) 28, 482
HpyCH4IV ACGT 1 cut(s) 418
HpyCH4V TGCA 8 cut(s) 153, 182, 416, 503, 647, 719, 1004, 1043
HpyF10VI GCNNNNNNNGC 4 cut(s) 182, 206, 1037, 1040
HpyF3I CTNAG 6 cut(s) 95, 143, 205, 778, 819, 909
HpySE526I ACGT 1 cut(s) 418
Hsp92II CATG 3 cut(s) 180, 241, 668
HspAI GCGC 1 cut(s) 587
Kzo9I GATC 2 cut(s) 1065, 1139
Lsp1109I GCAGC 5 cut(s) 194, 1018, 1021, 1024, 1027
LweI GCATC 3 cut(s) 319, 340, 634
MaeI CTAG 2 cut(s) 728, 1107
MaeII ACGT 1 cut(s) 418
MaeIII GTNAC 3 cut(s) 28, 577, 883
MalI GATC 2 cut(s) 1067, 1141
MboI GATC 2 cut(s) 1065, 1139
MboII GAAGA 1 cut(s) 722
MhlI GDGCHC 1 cut(s) 237
MlyI GAGTC 1 cut(s) 238
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 7 cut(s) 104, 214, 791, 835, 929, 1018, 1122
Mph1103I ATGCAT 1 cut(s) 1006
MseI TTAA 4 cut(s) 171, 294, 441, 1071
MslI CAYNNNNRTG 1 cut(s) 652
MspI CCGG 2 cut(s) 425, 563
MspR9I CCNGG 3 cut(s) 426, 673, 741
Mva1269I GAATGC 1 cut(s) 1004
MvaI CCWGG 2 cut(s) 673, 741
MwoI GCNNNNNNNGC 4 cut(s) 182, 206, 1037, 1040
NciI CCSGG 1 cut(s) 426
NdeI CATATG 1 cut(s) 336
NdeII GATC 2 cut(s) 1065, 1139
NlaIII CATG 3 cut(s) 180, 241, 668
NlaIV GGNNCC 1 cut(s) 1130
NmuCI GTSAC 2 cut(s) 28, 883
NsiI ATGCAT 1 cut(s) 1006
NspI RCATGY 1 cut(s) 180
NspV TTCGAA 1 cut(s) 550
OliI CACNNNNGTG 1 cut(s) 652
PctI GAATGC 1 cut(s) 1004
PfeI GAWTC 2 cut(s) 99, 713
PflMI CCANNNNNTGG 3 cut(s) 229, 458, 540
PfoI TCCNGGA 1 cut(s) 671
PkrI GCNGC 6 cut(s) 184, 1033, 1036, 1039, 1042, 1147
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PshBI ATTAAT 1 cut(s) 1071
PsiI TTATAA 1 cut(s) 774
Psp6I CCWGG 2 cut(s) 671, 739
PspGI CCWGG 2 cut(s) 671, 739
PspN4I GGNNCC 1 cut(s) 1130
PspPI GGNCC 2 cut(s) 990, 1129
RsaI GTAC 2 cut(s) 88, 508
RsaNI GTAC 2 cut(s) 87, 507
RseI CAYNNNNRTG 1 cut(s) 652
SaqAI TTAA 4 cut(s) 171, 294, 441, 1071
SatI GCNGC 6 cut(s) 183, 1032, 1035, 1038, 1041, 1146
Sau3AI GATC 2 cut(s) 1065, 1139
Sau96I GGNCC 2 cut(s) 990, 1129
ScaI AGTACT 1 cut(s) 508
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 3 cut(s) 426, 673, 741
SduI GDGCHC 1 cut(s) 237
SfaNI GCATC 3 cut(s) 319, 340, 634
SfcI CTRYAG 1 cut(s) 1020
SfuI TTCGAA 1 cut(s) 550
SinI GGWCC 1 cut(s) 990
SmiMI CAYNNNNRTG 1 cut(s) 652
SsiI CCGC 2 cut(s) 21, 839
SspMI CTAG 2 cut(s) 728, 1107
StyD4I CCNGG 3 cut(s) 424, 671, 739
TaaI ACNGT 2 cut(s) 28, 482
TaiI ACGT 1 cut(s) 421
TaqI TCGA 1 cut(s) 550
TatI WGTACW 1 cut(s) 506
TfiI GAWTC 2 cut(s) 99, 713
Tru1I TTAA 4 cut(s) 171, 294, 441, 1071
Tru9I TTAA 4 cut(s) 171, 294, 441, 1071
TscAI CASTG 2 cut(s) 230, 545
TseFI GTSAC 2 cut(s) 28, 883
TseI GCWGC 6 cut(s) 182, 1031, 1034, 1037, 1040, 1145
Tsp45I GTSAC 2 cut(s) 28, 883
TspDTI ATGAA 5 cut(s) 17, 411, 723, 997, 1070
TspGWI ACGGA 1 cut(s) 6
TspRI CASTG 2 cut(s) 230, 545
Van91I CCANNNNNTGG 3 cut(s) 229, 458, 540
VpaK11BI GGWCC 1 cut(s) 990
VspI ATTAAT 1 cut(s) 1071
XagI CCTNNNNNAGG 1 cut(s) 252
XceI RCATGY 1 cut(s) 180
XspI CTAG 2 cut(s) 728, 1107
ZrmI AGTACT 1 cut(s) 508
Zsp2I ATGCAT 1 cut(s) 1006
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.