Rmu_sc0040044.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040044.1
OG0000147
Physical Location & Seq
Forward (+)
1 .. 1974
1974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040044.1_g000001.1.cds

Sequence Viewer

Length: 1030 bp
ataaagttagaaggcagtttggttacagtaaaggatttaatgtcgaacccattgaaacagctggcggtctaagcctttggtggaaacctgaattttcagtgagtatcttggattactcgatgcatttcattgaaactgtggtaaccaagactggctcatcacgcttcaggatcacttggctttatggtccaccctattttgctgataaggaaaagttttgggattcctggaatagtaaaaattggaatgatgggacgccctggttggtaattggtgatttgaatgaattgataagccaacatgagaaagaaggaggagctacttggggtctcaatagaaggcagtttttgagatgcttccagaacacaaataagttgatcgatattggctttcaagggcagaatttcacttgggcaaggaaggtggatggtgtaattgtgctgcaagaaagattggatagatgtcttgttgacgagaattggcttctagcttggccagacaccaccttgtcgcatctgactaggattggttctgatcacaatcctattctcttggaaacaaacccagttttgatcaagcccaaaccctcctttaagtttgaggcatattgggccgaggattctgattgttatgagatagttagggataattggaggagtagtggaactgcttcacatagttccacttggtcttctaacttatccagatgcaagcacaaattaaggaagtggagcaagacacgctttcccaagagcactaattctgaaataaaaaaatgcctcttggaacttgaagatctacaaatctcggctcctttcactagtaatgttcagcaattggaaatcacaaacaagttgagctctctttggagattgaatgagcagtattggcaccaaaggtccaggattaattggctaaaagctggagactccaattcacggttcttccatctcaccacgattcaccgaaggcaaaggaatcgcatcctaaggatacaaaatgctaatgaagtttgggtgattggagaaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

342

Amino Acids

40.26

Weight (kDa)

9.37

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 890
AciI CCGC 1 cut(s) 65
AclWI GGATC 1 cut(s) 178
AcoI YGGCCR 1 cut(s) 493
AcsI RAATTY 2 cut(s) 91, 402
AcuI CTGAAG 1 cut(s) 150
AcyI GRCGYC 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 938
AgsI TTSAA 6 cut(s) 55, 133, 282, 394, 793, 876
AhlI ACTAGT 1 cut(s) 820
AjnI CCWGG 3 cut(s) 226, 259, 901
AjuI GAANNNNNNNTTGG 2 cut(s) 925, 957
AluBI AGCT 5 cut(s) 61, 319, 490, 860, 922
AluI AGCT 5 cut(s) 61, 319, 490, 860, 922
Alw21I GWGCWC 2 cut(s) 757, 862
Alw26I GTCTC 2 cut(s) 334, 920
AlwI GGATC 1 cut(s) 178
AoxI GGCC 2 cut(s) 493, 611
ApeKI GCWGC 1 cut(s) 441
ApoI RAATTY 2 cut(s) 91, 402
AseI ATTAAT 1 cut(s) 908
Asp700I GAANNNNTTC 1 cut(s) 669
AspS9I GGNCC 3 cut(s) 187, 611, 899
AsuHPI GGTGA 4 cut(s) 286, 945, 955, 1029
AvaII GGWCC 2 cut(s) 187, 899
AxyI CCTNAGG 1 cut(s) 988
BalI TGGCCA 1 cut(s) 495
BanI GGYRCC 1 cut(s) 890
BanII GRGCYC 1 cut(s) 862
BbsI GAAGAC 1 cut(s) 683
Bbv12I GWGCWC 2 cut(s) 757, 862
BbvI GCAGC 1 cut(s) 428
BccI CCATC 3 cut(s) 244, 421, 956
BcgI CGANNNNNNTGC 2 cut(s) 961, 995
BciT130I CCWGG 3 cut(s) 228, 261, 903
BciVI GTATCC 1 cut(s) 986
BclI TGATCA 2 cut(s) 534, 572
BcoDI GTCTC 2 cut(s) 334, 920
BcuI ACTAGT 1 cut(s) 820
BfaI CTAG 3 cut(s) 487, 521, 821
BfuI GTATCC 1 cut(s) 986
BglII AGATCT 1 cut(s) 795
BisI GCNGC 1 cut(s) 442
BlsI GCNGC 1 cut(s) 443
Bme1390I CCNGG 3 cut(s) 228, 261, 903
Bme18I GGWCC 2 cut(s) 187, 899
BmgT120I GGNCC 3 cut(s) 187, 611, 899
BmiI GGNNCC 2 cut(s) 812, 892
BmrFI CCNGG 3 cut(s) 228, 261, 903
BmrI ACTGGG 1 cut(s) 559
BmsI GCATC 5 cut(s) 110, 343, 522, 697, 992
BmuI ACTGGG 1 cut(s) 559
BpiI GAAGAC 1 cut(s) 683
BpmI CTGGAG 1 cut(s) 944
Bsa29I ATCGAT 1 cut(s) 380
BsaBI GATNNNNATC 1 cut(s) 539
BsaHI GRCGYC 1 cut(s) 256
BsaI GGTCTC 1 cut(s) 334
BsaJI CCNNGG 2 cut(s) 259, 614
BsaXI ACNNNNNCTCC 2 cut(s) 645, 675
Bsc4I CCNNNNNNNGG 1 cut(s) 938
Bse1I ACTGG 2 cut(s) 156, 565
Bse21I CCTNAGG 1 cut(s) 988
Bse8I GATNNNNATC 1 cut(s) 539
BseBI CCWGG 3 cut(s) 228, 261, 903
BseCI ATCGAT 1 cut(s) 380
BseDI CCNNGG 2 cut(s) 259, 614
BseGI GGATG 2 cut(s) 432, 983
BseJI GATNNNNATC 1 cut(s) 539
BseLI CCNNNNNNNGG 1 cut(s) 938
BseNI ACTGG 2 cut(s) 156, 565
BseRI GAGGAG 2 cut(s) 329, 669
BseXI GCAGC 1 cut(s) 428
BshFI GGCC 2 cut(s) 495, 613
BshNI GGYRCC 1 cut(s) 890
BshVI ATCGAT 1 cut(s) 380
BsiHKAI GWGCWC 2 cut(s) 757, 862
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 1 cut(s) 938
BsmAI GTCTC 2 cut(s) 334, 920
BsmFI GGGAC 1 cut(s) 267
BsnI GGCC 2 cut(s) 495, 613
Bso31I GGTCTC 1 cut(s) 334
Bsp1286I GDGCHC 2 cut(s) 757, 862
Bsp143I GATC 5 cut(s) 170, 377, 534, 572, 795
BspACI CCGC 1 cut(s) 65
BspANI GGCC 2 cut(s) 495, 613
BspDI ATCGAT 1 cut(s) 380
BspLI GGNNCC 2 cut(s) 812, 892
BspPI GGATC 1 cut(s) 178
BspT107I GGYRCC 1 cut(s) 890
BspTNI GGTCTC 1 cut(s) 334
BsrI ACTGG 2 cut(s) 156, 565
BssECI CCNNGG 2 cut(s) 259, 614
BssMI GATC 5 cut(s) 170, 377, 534, 572, 795
BssNI GRCGYC 1 cut(s) 256
Bst2UI CCWGG 3 cut(s) 228, 261, 903
Bst4CI ACNGT 3 cut(s) 28, 138, 941
BstACI GRCGYC 1 cut(s) 256
BstC8I GCNNGC 2 cut(s) 63, 712
BstDEI CTNAG 2 cut(s) 70, 988
BstEII GGTNACC 1 cut(s) 141
BstF5I GGATG 2 cut(s) 432, 983
BstKTI GATC 5 cut(s) 173, 380, 537, 575, 798
BstMAI GTCTC 2 cut(s) 334, 920
BstMBI GATC 5 cut(s) 170, 377, 534, 572, 795
BstMWI GCNNNNNNNGC 5 cut(s) 71, 161, 610, 740, 888
BstNI CCWGG 3 cut(s) 228, 261, 903
BstPI GGTNACC 1 cut(s) 141
BstSCI CCNGG 3 cut(s) 226, 259, 901
BstV1I GCAGC 1 cut(s) 428
BstV2I GAAGAC 1 cut(s) 683
BstX2I RGATCY 1 cut(s) 795
BstYI RGATCY 1 cut(s) 795
Bsu15I ATCGAT 1 cut(s) 380
Bsu36I CCTNAGG 1 cut(s) 988
BsuI GTATCC 1 cut(s) 986
BsuRI GGCC 2 cut(s) 495, 613
BsuTUI ATCGAT 1 cut(s) 380
BtsCI GGATG 2 cut(s) 432, 983
BtsIMutI CAGTG 1 cut(s) 104
Cac8I GCNNGC 2 cut(s) 63, 712
Cfr13I GGNCC 3 cut(s) 187, 611, 899
ClaI ATCGAT 1 cut(s) 380
CseI GACGC 1 cut(s) 264
CspCI CAANNNNNGTGG 2 cut(s) 404, 439
CviAII CATG 1 cut(s) 301
DdeI CTNAG 2 cut(s) 70, 988
DpnI GATC 5 cut(s) 172, 379, 536, 574, 797
DpnII GATC 5 cut(s) 170, 377, 534, 572, 795
EaeI YGGCCR 1 cut(s) 493
Ecl136II GAGCTC 1 cut(s) 860
Eco24I GRGCYC 1 cut(s) 862
Eco31I GGTCTC 1 cut(s) 334
Eco47I GGWCC 2 cut(s) 187, 899
Eco53kI GAGCTC 1 cut(s) 860
Eco57I CTGAAG 1 cut(s) 150
Eco81I CCTNAGG 1 cut(s) 988
Eco91I GGTNACC 1 cut(s) 141
EcoICRI GAGCTC 1 cut(s) 860
EcoO65I GGTNACC 1 cut(s) 141
EcoRII CCWGG 3 cut(s) 226, 259, 901
EcoT22I ATGCAT 1 cut(s) 125
EcoT38I GRGCYC 1 cut(s) 862
FaeI CATG 1 cut(s) 304
FaiI YATR 5 cut(s) 185, 302, 606, 632, 677
FalI AAGNNNNNCTT 2 cut(s) 727, 759
FaqI GGGAC 1 cut(s) 267
FatI CATG 1 cut(s) 300
FbaI TGATCA 2 cut(s) 534, 572
Fnu4HI GCNGC 1 cut(s) 442
FokI GGATG 2 cut(s) 439, 970
FriOI GRGCYC 1 cut(s) 862
Fsp4HI GCNGC 1 cut(s) 442
FspBI CTAG 3 cut(s) 487, 521, 821
GluI GCNGC 1 cut(s) 442
GsuI CTGGAG 1 cut(s) 944
HaeIII GGCC 2 cut(s) 495, 613
HgaI GACGC 1 cut(s) 264
Hin1I GRCGYC 1 cut(s) 256
Hin1II CATG 1 cut(s) 304
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HinfI GANTC 5 cut(s) 223, 619, 928, 960, 978
HphI GGTGA 4 cut(s) 286, 945, 955, 1029
Hpy166II GTNNAC 2 cut(s) 190, 471
Hpy188I TCNGA 4 cut(s) 518, 534, 624, 765
Hpy188III TCNNGA 3 cut(s) 168, 360, 704
Hpy8I GTNNAC 2 cut(s) 190, 471
HpyAV CCTTC 5 cut(s) 5, 304, 332, 414, 962
HpyCH4III ACNGT 3 cut(s) 28, 138, 941
HpyCH4V TGCA 3 cut(s) 123, 444, 710
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 161, 610, 740, 888
HpyF3I CTNAG 2 cut(s) 70, 988
Hsp92I GRCGYC 1 cut(s) 256
Hsp92II CATG 1 cut(s) 304
Ksp22I TGATCA 2 cut(s) 534, 572
Kzo9I GATC 5 cut(s) 170, 377, 534, 572, 795
LmnI GCTCC 3 cut(s) 316, 731, 816
Lsp1109I GCAGC 1 cut(s) 428
LweI GCATC 5 cut(s) 110, 343, 522, 697, 992
MaeI CTAG 3 cut(s) 487, 521, 821
MaeIII GTNAC 2 cut(s) 22, 141
MalI GATC 5 cut(s) 172, 379, 536, 574, 797
MboI GATC 5 cut(s) 170, 377, 534, 572, 795
MboII GAAGA 3 cut(s) 683, 805, 936
MfeI CAATTG 1 cut(s) 835
MflI RGATCY 1 cut(s) 795
MhlI GDGCHC 2 cut(s) 757, 862
MlsI TGGCCA 1 cut(s) 495
MluNI TGGCCA 1 cut(s) 495
MlyI GAGTC 1 cut(s) 922
MnlI CCTC 6 cut(s) 307, 594, 597, 609, 647, 790
Mox20I TGGCCA 1 cut(s) 495
Mph1103I ATGCAT 1 cut(s) 125
MroXI GAANNNNTTC 1 cut(s) 669
MscI TGGCCA 1 cut(s) 495
MseI TTAA 4 cut(s) 38, 593, 721, 908
Msp20I TGGCCA 1 cut(s) 495
MspA1I CMGCKG 1 cut(s) 61
MspR9I CCNGG 3 cut(s) 228, 261, 903
MunI CAATTG 1 cut(s) 835
MvaI CCWGG 3 cut(s) 228, 261, 903
MwoI GCNNNNNNNGC 5 cut(s) 71, 161, 610, 740, 888
NdeII GATC 5 cut(s) 170, 377, 534, 572, 795
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 2 cut(s) 812, 892
NmeAIII GCCGAG 2 cut(s) 639, 787
NsiI ATGCAT 1 cut(s) 125
PdmI GAANNNNTTC 1 cut(s) 669
PfeI GAWTC 4 cut(s) 223, 619, 960, 978
PfoI TCCNGGA 2 cut(s) 226, 901
PkrI GCNGC 1 cut(s) 443
PleI GAGTC 1 cut(s) 922
PpsI GAGTC 1 cut(s) 922
PshBI ATTAAT 1 cut(s) 908
Psp124BI GAGCTC 1 cut(s) 862
Psp6I CCWGG 3 cut(s) 226, 259, 901
PspEI GGTNACC 1 cut(s) 141
PspGI CCWGG 3 cut(s) 226, 259, 901
PspN4I GGNNCC 2 cut(s) 812, 892
PspPI GGNCC 3 cut(s) 187, 611, 899
PsuI RGATCY 1 cut(s) 795
PvuII CAGCTG 1 cut(s) 61
SacI GAGCTC 1 cut(s) 862
SaqAI TTAA 4 cut(s) 38, 593, 721, 908
SatI GCNGC 1 cut(s) 442
Sau3AI GATC 5 cut(s) 170, 377, 534, 572, 795
Sau96I GGNCC 3 cut(s) 187, 611, 899
SchI GAGTC 1 cut(s) 922
ScrFI CCNGG 3 cut(s) 228, 261, 903
SduI GDGCHC 2 cut(s) 757, 862
SetI ASST 9 cut(s) 63, 90, 321, 425, 492, 508, 862, 901, 924
SfaNI GCATC 5 cut(s) 110, 343, 522, 697, 992
SinI GGWCC 2 cut(s) 187, 899
SpeI ACTAGT 1 cut(s) 820
SsiI CCGC 1 cut(s) 65
SspMI CTAG 3 cut(s) 487, 521, 821
SstI GAGCTC 1 cut(s) 862
StyD4I CCNGG 3 cut(s) 226, 259, 901
TaaI ACNGT 3 cut(s) 28, 138, 941
TaqI TCGA 3 cut(s) 44, 118, 380
TfiI GAWTC 4 cut(s) 223, 619, 960, 978
Tru1I TTAA 4 cut(s) 38, 593, 721, 908
Tru9I TTAA 4 cut(s) 38, 593, 721, 908
TscAI CASTG 1 cut(s) 104
TseI GCWGC 1 cut(s) 441
TspDTI ATGAA 3 cut(s) 117, 299, 1022
TspRI CASTG 1 cut(s) 104
VpaK11BI GGWCC 2 cut(s) 187, 899
VspI ATTAAT 1 cut(s) 908
XapI RAATTY 2 cut(s) 91, 402
XmnI GAANNNNTTC 1 cut(s) 669
XspI CTAG 3 cut(s) 487, 521, 821
Zsp2I ATGCAT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.