Rh7DG401600

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000147
Physical Location & Seq
Reverse (-)
55311192 .. 55311985
794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG401600.1

Sequence Viewer

Length: 510 bp
ATGGCGGCGGCCTGGCTCTCTTTTGGGACAACTCTGTCCATGTTACTTGCATTTCCGGGACCTGAATTCACATGCTACTGTTTTCAACATGGGAAGGTGGTCATCAAGGAAAGGCTAGACCGTGCTTTGGCCAATAATTCTTGGATGGTTAATCAATCCCGATCTCAAATTTTCCATCTTCCTTTACTGGGATCTAATCACCGACCAATATTGGTTGACACAGCTCCTGCTCAAAAAATTAATCCTCTTCTCTTCCGTTTTGAGCATCTTTGGACTCTCCACCCTGCGAGCTATCAGATCGTGCAAGAAAATTGGAACCCTTGTCTTCCTCCTTCTGCTAGCATTTCTTGGGCTAGAAATTTGCAAAGCTGCAAATCCTCCCTTGGTTCTTGGGCCAAAAATACTTTCCCAAACTTTCGGAAACAGGTCAGCTCTGATATCAATCTAATCCAAGCCCTTTTGGATTCTGATCAGGATGAAATTCAGGGGGGATATCACTACTGCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

169

Amino Acids

19.23

Weight (kDa)

8.31

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 34
AciI CCGC 2 cut(s) 5, 8
AclWI GGATC 1 cut(s) 199
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 4 cut(s) 65, 168, 358, 480
AfiI CCNNNNNNNGG 2 cut(s) 127, 188
AgsI TTSAA 1 cut(s) 86
AjnI CCWGG 1 cut(s) 11
AjuI GAANNNNNNNTTGG 2 cut(s) 389, 421
AluBI AGCT 4 cut(s) 224, 291, 369, 432
AluI AGCT 4 cut(s) 224, 291, 369, 432
AlwI GGATC 1 cut(s) 199
AlwNI CAGNNNCTG 1 cut(s) 227
AoxI GGCC 3 cut(s) 9, 129, 393
ApeKI GCWGC 1 cut(s) 369
ApoI RAATTY 4 cut(s) 65, 168, 358, 480
AseI ATTAAT 1 cut(s) 240
AspS9I GGNCC 2 cut(s) 59, 393
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 191
AsuNHI GCTAGC 1 cut(s) 338
AvaII GGWCC 1 cut(s) 59
BalI TGGCCA 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 317
BbvI GCAGC 1 cut(s) 356
BccI CCATC 2 cut(s) 139, 183
BciT130I CCWGG 1 cut(s) 13
BclI TGATCA 1 cut(s) 469
BcnI CCSGG 1 cut(s) 57
BfaI CTAG 3 cut(s) 116, 339, 354
BisI GCNGC 3 cut(s) 6, 9, 370
BlsI GCNGC 3 cut(s) 7, 10, 371
Bme1390I CCNGG 2 cut(s) 13, 57
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 2 cut(s) 59, 393
BmiI GGNNCC 2 cut(s) 60, 317
BmrFI CCNGG 2 cut(s) 13, 57
BmrI ACTGGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 274
BmtI GCTAGC 1 cut(s) 342
BmuI ACTGGG 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 317
BpuMI CCSGG 1 cut(s) 57
BsaBI GATNNNNATC 2 cut(s) 441, 468
BsaJI CCNNGG 1 cut(s) 382
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 188
Bse1I ACTGG 1 cut(s) 192
Bse8I GATNNNNATC 2 cut(s) 441, 468
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 382
BseGI GGATG 2 cut(s) 150, 481
BseJI GATNNNNATC 2 cut(s) 441, 468
BseLI CCNNNNNNNGG 2 cut(s) 127, 188
BseNI ACTGG 1 cut(s) 192
BseXI GCAGC 1 cut(s) 356
BshFI GGCC 3 cut(s) 11, 131, 395
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 2 cut(s) 40, 72
BslI CCNNNNNNNGG 2 cut(s) 127, 188
BsmFI GGGAC 2 cut(s) 40, 72
BsnI GGCC 3 cut(s) 11, 131, 395
Bsp143I GATC 4 cut(s) 161, 191, 297, 469
BspACI CCGC 2 cut(s) 5, 8
BspANI GGCC 3 cut(s) 11, 131, 395
BspLI GGNNCC 2 cut(s) 60, 317
BspOI GCTAGC 1 cut(s) 342
BspPI GGATC 1 cut(s) 199
BsrI ACTGG 1 cut(s) 192
BssECI CCNNGG 1 cut(s) 382
BssMI GATC 4 cut(s) 161, 191, 297, 469
BssT1I CCWWGG 1 cut(s) 382
Bst2UI CCWGG 1 cut(s) 13
Bst4CI ACNGT 2 cut(s) 80, 122
Bst6I CTCTTC 2 cut(s) 252, 257
BstC8I GCNNGC 2 cut(s) 289, 340
BstF5I GGATG 2 cut(s) 150, 481
BstKTI GATC 4 cut(s) 164, 194, 300, 472
BstMBI GATC 4 cut(s) 161, 191, 297, 469
BstNI CCWGG 1 cut(s) 13
BstNSI RCATGY 1 cut(s) 75
BstSCI CCNGG 2 cut(s) 11, 55
BstV1I GCAGC 1 cut(s) 356
BstV2I GAAGAC 1 cut(s) 317
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BsuRI GGCC 3 cut(s) 11, 131, 395
BtsCI GGATG 2 cut(s) 150, 481
Cac8I GCNNGC 2 cut(s) 289, 340
CaiI CAGNNNCTG 1 cut(s) 227
Cfr13I GGNCC 2 cut(s) 59, 393
CviAII CATG 3 cut(s) 40, 72, 89
DpnI GATC 4 cut(s) 163, 193, 299, 471
DpnII GATC 4 cut(s) 161, 191, 297, 469
DrdI GACNNNNNNGTC 1 cut(s) 34
DseDI GACNNNNNNGTC 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 2 cut(s) 252, 257
EarI CTCTTC 2 cut(s) 252, 257
Eco130I CCWWGG 1 cut(s) 382
Eco32I GATATC 2 cut(s) 439, 494
Eco47I GGWCC 1 cut(s) 59
EcoO109I RGGNCCY 1 cut(s) 59
EcoRI GAATTC 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 11
EcoRV GATATC 2 cut(s) 439, 494
EcoT14I CCWWGG 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 382
FaeI CATG 3 cut(s) 43, 75, 92
FaiI YATR 3 cut(s) 41, 73, 90
FaqI GGGAC 2 cut(s) 40, 72
FatI CATG 3 cut(s) 39, 71, 88
FbaI TGATCA 1 cut(s) 469
Fnu4HI GCNGC 3 cut(s) 6, 9, 370
FokI GGATG 2 cut(s) 157, 488
Fsp4HI GCNGC 3 cut(s) 6, 9, 370
FspBI CTAG 3 cut(s) 116, 339, 354
GluI GCNGC 3 cut(s) 6, 9, 370
HaeIII GGCC 3 cut(s) 11, 131, 395
HapII CCGG 1 cut(s) 56
Hin1II CATG 3 cut(s) 43, 75, 92
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 2 cut(s) 274, 464
HpaII CCGG 1 cut(s) 56
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 4 cut(s) 297, 420, 436, 469
Hpy188III TCNNGA 2 cut(s) 159, 473
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 2 cut(s) 88, 342
HpyCH4III ACNGT 2 cut(s) 80, 122
HpyCH4V TGCA 4 cut(s) 50, 304, 364, 372
Hsp92II CATG 3 cut(s) 43, 75, 92
Ksp22I TGATCA 1 cut(s) 469
Kzo9I GATC 4 cut(s) 161, 191, 297, 469
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 9 cut(s) 25, 69, 75, 173, 240, 297, 410, 458, 470
Lsp1109I GCAGC 1 cut(s) 356
LweI GCATC 1 cut(s) 274
MaeI CTAG 3 cut(s) 116, 339, 354
MaeIII GTNAC 1 cut(s) 42
MalI GATC 4 cut(s) 163, 193, 299, 471
MboI GATC 4 cut(s) 161, 191, 297, 469
MboII GAAGA 4 cut(s) 170, 239, 244, 317
MflI RGATCY 1 cut(s) 191
MlsI TGGCCA 1 cut(s) 131
MluCI AATT 7 cut(s) 65, 136, 168, 237, 310, 358, 480
MluNI TGGCCA 1 cut(s) 131
MlyI GAGTC 1 cut(s) 268
MnlI CCTC 3 cut(s) 255, 339, 388
Mox20I TGGCCA 1 cut(s) 131
MscI TGGCCA 1 cut(s) 131
MseI TTAA 2 cut(s) 150, 240
Msp20I TGGCCA 1 cut(s) 131
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 2 cut(s) 13, 57
MvaI CCWGG 1 cut(s) 13
NciI CCSGG 1 cut(s) 57
NdeII GATC 4 cut(s) 161, 191, 297, 469
NheI GCTAGC 1 cut(s) 338
NlaIII CATG 3 cut(s) 43, 75, 92
NlaIV GGNNCC 2 cut(s) 60, 317
NspI RCATGY 1 cut(s) 75
PfeI GAWTC 1 cut(s) 464
PfoI TCCNGGA 1 cut(s) 55
PkrI GCNGC 3 cut(s) 7, 10, 371
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
PpuMI RGGWCCY 1 cut(s) 59
PshBI ATTAAT 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
PspN4I GGNNCC 2 cut(s) 60, 317
PspPI GGNCC 2 cut(s) 59, 393
PspPPI RGGWCCY 1 cut(s) 59
PstNI CAGNNNCTG 1 cut(s) 227
PsuI RGATCY 1 cut(s) 191
SaqAI TTAA 2 cut(s) 150, 240
SatI GCNGC 3 cut(s) 6, 9, 370
Sau3AI GATC 4 cut(s) 161, 191, 297, 469
Sau96I GGNCC 2 cut(s) 59, 393
SchI GAGTC 1 cut(s) 268
ScrFI CCNGG 2 cut(s) 13, 57
SetI ASST 7 cut(s) 64, 99, 226, 293, 371, 429, 434
SfaNI GCATC 1 cut(s) 274
SinI GGWCC 1 cut(s) 59
Sse9I AATT 7 cut(s) 65, 136, 168, 237, 310, 358, 480
SsiI CCGC 2 cut(s) 5, 8
SspI AATATT 1 cut(s) 210
SspMI CTAG 3 cut(s) 116, 339, 354
StyD4I CCNGG 2 cut(s) 11, 55
StyI CCWWGG 1 cut(s) 382
TaaI ACNGT 2 cut(s) 80, 122
TasI AATT 7 cut(s) 65, 136, 168, 237, 310, 358, 480
TauI GCSGC 2 cut(s) 8, 11
TfiI GAWTC 1 cut(s) 464
Tru1I TTAA 2 cut(s) 150, 240
Tru9I TTAA 2 cut(s) 150, 240
TseI GCWGC 1 cut(s) 369
TspDTI ATGAA 1 cut(s) 492
TspGWI ACGGA 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 59
VspI ATTAAT 1 cut(s) 240
XapI RAATTY 4 cut(s) 65, 168, 358, 480
XceI RCATGY 1 cut(s) 75
XspI CTAG 3 cut(s) 116, 339, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.