ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 571 |
| AclWI | GGATC | 2 cut(s) | 269, 706 |
| AcsI | RAATTY | 1 cut(s) | 611 |
| AfaI | GTAC | 1 cut(s) | 730 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 69 |
| AflIII | ACRYGT | 1 cut(s) | 735 |
| AgsI | TTSAA | 2 cut(s) | 277, 568 |
| AjnI | CCWGG | 3 cut(s) | 512, 574, 592 |
| AluBI | AGCT | 2 cut(s) | 135, 647 |
| AluI | AGCT | 2 cut(s) | 135, 647 |
| Alw26I | GTCTC | 1 cut(s) | 209 |
| AlwI | GGATC | 2 cut(s) | 269, 706 |
| Ama87I | CYCGRG | 1 cut(s) | 173 |
| AoxI | GGCC | 3 cut(s) | 9, 439, 515 |
| ApoI | RAATTY | 1 cut(s) | 611 |
| AspLEI | GCGC | 1 cut(s) | 130 |
| AspS9I | GGNCC | 6 cut(s) | 9, 283, 440, 475, 516, 578 |
| AsuC2I | CCSGG | 1 cut(s) | 395 |
| AvaI | CYCGRG | 1 cut(s) | 173 |
| AvaII | GGWCC | 3 cut(s) | 283, 475, 578 |
| BanI | GGYRCC | 1 cut(s) | 571 |
| BccI | CCATC | 1 cut(s) | 578 |
| BciT130I | CCWGG | 3 cut(s) | 514, 576, 594 |
| BclI | TGATCA | 1 cut(s) | 120 |
| BcnI | CCSGG | 1 cut(s) | 395 |
| BcoDI | GTCTC | 1 cut(s) | 209 |
| BfaI | CTAG | 4 cut(s) | 59, 186, 408, 742 |
| BfmI | CTRYAG | 2 cut(s) | 604, 661 |
| BlpI | GCTNAGC | 1 cut(s) | 131 |
| Bme1390I | CCNGG | 4 cut(s) | 395, 514, 576, 594 |
| Bme18I | GGWCC | 3 cut(s) | 283, 475, 578 |
| BmeT110I | CYCGRG | 1 cut(s) | 173 |
| BmgT120I | GGNCC | 6 cut(s) | 9, 283, 440, 475, 516, 578 |
| BmiI | GGNNCC | 3 cut(s) | 284, 477, 573 |
| BmrFI | CCNGG | 4 cut(s) | 395, 514, 576, 594 |
| BmrI | ACTGGG | 1 cut(s) | 16 |
| BmuI | ACTGGG | 1 cut(s) | 16 |
| BpmI | CTGGAG | 2 cut(s) | 180, 265 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 131 |
| BpuEI | CTTGAG | 1 cut(s) | 548 |
| BpuMI | CCSGG | 1 cut(s) | 395 |
| BsaJI | CCNNGG | 3 cut(s) | 174, 443, 592 |
| BsaWI | WCCGGW | 2 cut(s) | 285, 580 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 69 |
| Bse1I | ACTGG | 1 cut(s) | 11 |
| BseBI | CCWGG | 3 cut(s) | 514, 576, 594 |
| BseDI | CCNNGG | 3 cut(s) | 174, 443, 592 |
| BseGI | GGATG | 1 cut(s) | 589 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 69 |
| BseMII | CTCAG | 2 cut(s) | 122, 504 |
| BseNI | ACTGG | 1 cut(s) | 11 |
| BseRI | GAGGAG | 3 cut(s) | 85, 395, 545 |
| BseYI | CCCAGC | 1 cut(s) | 135 |
| BsgI | GTGCAG | 1 cut(s) | 101 |
| BshFI | GGCC | 3 cut(s) | 11, 441, 517 |
| BshNI | GGYRCC | 1 cut(s) | 571 |
| BsiHKCI | CYCGRG | 1 cut(s) | 173 |
| BsiSI | CCGG | 3 cut(s) | 286, 394, 581 |
| BslFI | GGGAC | 3 cut(s) | 59, 296, 461 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 69 |
| BsmAI | GTCTC | 1 cut(s) | 209 |
| BsmFI | GGGAC | 3 cut(s) | 59, 296, 461 |
| BsnI | GGCC | 3 cut(s) | 11, 441, 517 |
| BsoBI | CYCGRG | 1 cut(s) | 173 |
| Bsp143I | GATC | 3 cut(s) | 120, 261, 711 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 131 |
| BspANI | GGCC | 3 cut(s) | 11, 441, 517 |
| BspCNI | CTCAG | 2 cut(s) | 123, 503 |
| BspLI | GGNNCC | 3 cut(s) | 284, 477, 573 |
| BspPI | GGATC | 2 cut(s) | 269, 706 |
| BspT107I | GGYRCC | 1 cut(s) | 571 |
| BsrI | ACTGG | 1 cut(s) | 11 |
| BssECI | CCNNGG | 3 cut(s) | 174, 443, 592 |
| BssMI | GATC | 3 cut(s) | 120, 261, 711 |
| BssT1I | CCWWGG | 1 cut(s) | 443 |
| Bst2UI | CCWGG | 3 cut(s) | 514, 576, 594 |
| Bst4CI | ACNGT | 1 cut(s) | 665 |
| Bst6I | CTCTTC | 2 cut(s) | 228, 436 |
| BstC8I | GCNNGC | 1 cut(s) | 64 |
| BstDEI | CTNAG | 2 cut(s) | 131, 490 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 67 |
| BstF5I | GGATG | 1 cut(s) | 589 |
| BstHHI | GCGC | 1 cut(s) | 130 |
| BstKTI | GATC | 3 cut(s) | 123, 264, 714 |
| BstMAI | GTCTC | 1 cut(s) | 209 |
| BstMBI | GATC | 3 cut(s) | 120, 261, 711 |
| BstNI | CCWGG | 3 cut(s) | 514, 576, 594 |
| BstNSI | RCATGY | 1 cut(s) | 739 |
| BstSCI | CCNGG | 4 cut(s) | 393, 512, 574, 592 |
| BstSFI | CTRYAG | 2 cut(s) | 604, 661 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 450 |
| BsuRI | GGCC | 3 cut(s) | 11, 441, 517 |
| BtsCI | GGATG | 1 cut(s) | 589 |
| BtsI | GCAGTG | 1 cut(s) | 89 |
| BtsIMutI | CAGTG | 2 cut(s) | 89, 670 |
| Cac8I | GCNNGC | 1 cut(s) | 64 |
| CfoI | GCGC | 1 cut(s) | 130 |
| Cfr13I | GGNCC | 6 cut(s) | 9, 283, 440, 475, 516, 578 |
| Csp6I | GTAC | 1 cut(s) | 729 |
| CviAII | CATG | 1 cut(s) | 736 |
| CviQI | GTAC | 1 cut(s) | 729 |
| DdeI | CTNAG | 2 cut(s) | 131, 490 |
| DpnI | GATC | 3 cut(s) | 122, 263, 713 |
| DpnII | GATC | 3 cut(s) | 120, 261, 711 |
| DraI | TTTAAA | 1 cut(s) | 639 |
| Eam1104I | CTCTTC | 2 cut(s) | 228, 436 |
| EarI | CTCTTC | 2 cut(s) | 228, 436 |
| Eco130I | CCWWGG | 1 cut(s) | 443 |
| Eco47I | GGWCC | 3 cut(s) | 283, 475, 578 |
| Eco88I | CYCGRG | 1 cut(s) | 173 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 67 |
| EcoO109I | RGGNCCY | 1 cut(s) | 516 |
| EcoRII | CCWGG | 3 cut(s) | 512, 574, 592 |
| EcoT14I | CCWWGG | 1 cut(s) | 443 |
| ErhI | CCWWGG | 1 cut(s) | 443 |
| FaeI | CATG | 1 cut(s) | 739 |
| FaiI | YATR | 3 cut(s) | 540, 606, 737 |
| FaqI | GGGAC | 3 cut(s) | 59, 296, 461 |
| FatI | CATG | 1 cut(s) | 735 |
| FbaI | TGATCA | 1 cut(s) | 120 |
| FokI | GGATG | 1 cut(s) | 596 |
| FspBI | CTAG | 4 cut(s) | 59, 186, 408, 742 |
| GlaI | GCGC | 1 cut(s) | 129 |
| GsaI | CCCAGC | 1 cut(s) | 139 |
| GsuI | CTGGAG | 2 cut(s) | 180, 265 |
| HaeIII | GGCC | 3 cut(s) | 11, 441, 517 |
| HapII | CCGG | 3 cut(s) | 286, 394, 581 |
| HhaI | GCGC | 1 cut(s) | 130 |
| Hin1II | CATG | 1 cut(s) | 739 |
| Hin6I | GCGC | 1 cut(s) | 128 |
| HinP1I | GCGC | 1 cut(s) | 128 |
| HinfI | GANTC | 4 cut(s) | 47, 73, 359, 535 |
| HpaII | CCGG | 3 cut(s) | 286, 394, 581 |
| Hpy166II | GTNNAC | 2 cut(s) | 405, 682 |
| Hpy188I | TCNGA | 2 cut(s) | 364, 493 |
| Hpy188III | TCNNGA | 6 cut(s) | 159, 173, 244, 464, 629, 709 |
| Hpy8I | GTNNAC | 2 cut(s) | 405, 682 |
| HpyAV | CCTTC | 4 cut(s) | 43, 187, 318, 529 |
| HpyCH4III | ACNGT | 1 cut(s) | 665 |
| HpyCH4V | TGCA | 2 cut(s) | 66, 82 |
| HpyF3I | CTNAG | 2 cut(s) | 131, 490 |
| Hsp92II | CATG | 1 cut(s) | 739 |
| HspAI | GCGC | 1 cut(s) | 128 |
| Ksp22I | TGATCA | 1 cut(s) | 120 |
| Kzo9I | GATC | 3 cut(s) | 120, 261, 711 |
| LmnI | GCTCC | 1 cut(s) | 87 |
| MaeI | CTAG | 4 cut(s) | 59, 186, 408, 742 |
| MalI | GATC | 3 cut(s) | 122, 263, 713 |
| MboI | GATC | 3 cut(s) | 120, 261, 711 |
| MboII | GAAGA | 4 cut(s) | 47, 245, 423, 426 |
| MfeI | CAATTG | 1 cut(s) | 265 |
| MluCI | AATT | 7 cut(s) | 140, 209, 227, 265, 448, 611, 634 |
| MlyI | GAGTC | 3 cut(s) | 41, 82, 353 |
| MseI | TTAA | 1 cut(s) | 638 |
| MspI | CCGG | 3 cut(s) | 286, 394, 581 |
| MspR9I | CCNGG | 4 cut(s) | 395, 514, 576, 594 |
| MunI | CAATTG | 1 cut(s) | 265 |
| MvaI | CCWGG | 3 cut(s) | 514, 576, 594 |
| NciI | CCSGG | 1 cut(s) | 395 |
| NdeII | GATC | 3 cut(s) | 120, 261, 711 |
| NlaIII | CATG | 1 cut(s) | 739 |
| NlaIV | GGNNCC | 3 cut(s) | 284, 477, 573 |
| NspI | RCATGY | 1 cut(s) | 739 |
| PciI | ACATGT | 1 cut(s) | 735 |
| PfeI | GAWTC | 1 cut(s) | 535 |
| PfoI | TCCNGGA | 1 cut(s) | 393 |
| PleI | GAGTC | 3 cut(s) | 41, 81, 353 |
| PpsI | GAGTC | 3 cut(s) | 41, 81, 353 |
| PscI | ACATGT | 1 cut(s) | 735 |
| Psp6I | CCWGG | 3 cut(s) | 512, 574, 592 |
| PspFI | CCCAGC | 1 cut(s) | 135 |
| PspGI | CCWGG | 3 cut(s) | 512, 574, 592 |
| PspN4I | GGNNCC | 3 cut(s) | 284, 477, 573 |
| PspPI | GGNCC | 6 cut(s) | 9, 283, 440, 475, 516, 578 |
| RsaI | GTAC | 1 cut(s) | 730 |
| RsaNI | GTAC | 1 cut(s) | 729 |
| SaqAI | TTAA | 1 cut(s) | 638 |
| Sau3AI | GATC | 3 cut(s) | 120, 261, 711 |
| Sau96I | GGNCC | 6 cut(s) | 9, 283, 440, 475, 516, 578 |
| SchI | GAGTC | 3 cut(s) | 41, 82, 353 |
| ScrFI | CCNGG | 4 cut(s) | 395, 514, 576, 594 |
| SetI | ASST | 8 cut(s) | 137, 257, 299, 413, 510, 577, 649, 734 |
| SfcI | CTRYAG | 2 cut(s) | 604, 661 |
| SinI | GGWCC | 3 cut(s) | 283, 475, 578 |
| SmiI | ATTTAAAT | 1 cut(s) | 639 |
| SmlI | CTYRAG | 1 cut(s) | 527 |
| SmoI | CTYRAG | 1 cut(s) | 527 |
| Sse9I | AATT | 7 cut(s) | 140, 209, 227, 265, 448, 611, 634 |
| SspI | AATATT | 1 cut(s) | 703 |
| SspMI | CTAG | 4 cut(s) | 59, 186, 408, 742 |
| StyD4I | CCNGG | 4 cut(s) | 393, 512, 574, 592 |
| StyI | CCWWGG | 1 cut(s) | 443 |
| SwaI | ATTTAAAT | 1 cut(s) | 639 |
| TaaI | ACNGT | 1 cut(s) | 665 |
| TaqI | TCGA | 1 cut(s) | 628 |
| TasI | AATT | 7 cut(s) | 140, 209, 227, 265, 448, 611, 634 |
| TfiI | GAWTC | 1 cut(s) | 535 |
| Tru1I | TTAA | 1 cut(s) | 638 |
| Tru9I | TTAA | 1 cut(s) | 638 |
| TscAI | CASTG | 2 cut(s) | 89, 670 |
| TspDTI | ATGAA | 4 cut(s) | 17, 25, 293, 527 |
| TspRI | CASTG | 2 cut(s) | 89, 670 |
| VpaK11BI | GGWCC | 3 cut(s) | 283, 475, 578 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 67 |
| XapI | RAATTY | 1 cut(s) | 611 |
| XceI | RCATGY | 1 cut(s) | 739 |
| XspI | CTAG | 4 cut(s) | 59, 186, 408, 742 |