ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 889 |
| AccB1I | GGYRCC | 1 cut(s) | 807 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 130 |
| AciI | CCGC | 2 cut(s) | 38, 289 |
| AclWI | GGATC | 1 cut(s) | 1028 |
| AcoI | YGGCCR | 2 cut(s) | 49, 290 |
| AcsI | RAATTY | 5 cut(s) | 8, 308, 460, 494, 613 |
| AcuI | CTGAAG | 2 cut(s) | 16, 857 |
| AcyI | GRCGYC | 1 cut(s) | 886 |
| AfaI | GTAC | 1 cut(s) | 77 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 33, 34, 130, 257, 285, 532, 702 |
| AflII | CTTAAG | 1 cut(s) | 1241 |
| AgsI | TTSAA | 7 cut(s) | 318, 618, 722, 992, 1210, 1222, 1232 |
| AjiI | CACGTC | 1 cut(s) | 630 |
| AjnI | CCWGG | 2 cut(s) | 500, 998 |
| AleI | CACNNNNGTG | 1 cut(s) | 918 |
| AluBI | AGCT | 5 cut(s) | 607, 622, 685, 709, 1191 |
| AluI | AGCT | 5 cut(s) | 607, 622, 685, 709, 1191 |
| AlwI | GGATC | 1 cut(s) | 1028 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1160, 1194 |
| ApeKI | GCWGC | 1 cut(s) | 725 |
| ApoI | RAATTY | 5 cut(s) | 8, 308, 460, 494, 613 |
| AspS9I | GGNCC | 4 cut(s) | 136, 488, 786, 1002 |
| AsuHPI | GGTGA | 5 cut(s) | 55, 377, 586, 854, 905 |
| AsuII | TTCGAA | 1 cut(s) | 386 |
| AvaII | GGWCC | 2 cut(s) | 136, 786 |
| BanI | GGYRCC | 1 cut(s) | 807 |
| BbsI | GAAGAC | 1 cut(s) | 223 |
| BbvI | GCAGC | 1 cut(s) | 737 |
| BccI | CCATC | 4 cut(s) | 166, 515, 917, 1002 |
| BciT130I | CCWGG | 2 cut(s) | 502, 1000 |
| BciVI | GTATCC | 2 cut(s) | 331, 419 |
| BclI | TGATCA | 1 cut(s) | 1171 |
| BfaI | CTAG | 1 cut(s) | 275 |
| BfmI | CTRYAG | 1 cut(s) | 1028 |
| BfrI | CTTAAG | 1 cut(s) | 1241 |
| BfuI | GTATCC | 2 cut(s) | 331, 419 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1009 |
| BisI | GCNGC | 2 cut(s) | 290, 726 |
| BlsI | GCNGC | 2 cut(s) | 291, 727 |
| Bme1390I | CCNGG | 2 cut(s) | 502, 1000 |
| Bme18I | GGWCC | 2 cut(s) | 136, 786 |
| BmgBI | CACGTC | 1 cut(s) | 630 |
| BmgT120I | GGNCC | 4 cut(s) | 136, 488, 786, 1002 |
| BmiI | GGNNCC | 6 cut(s) | 137, 490, 788, 809, 997, 1004 |
| BmrFI | CCNGG | 2 cut(s) | 502, 1000 |
| BmrI | ACTGGG | 2 cut(s) | 140, 1049 |
| BmsI | GCATC | 2 cut(s) | 547, 1102 |
| BmuI | ACTGGG | 2 cut(s) | 140, 1049 |
| BpiI | GAAGAC | 1 cut(s) | 223 |
| BpmI | CTGGAG | 1 cut(s) | 237 |
| Bpu14I | TTCGAA | 1 cut(s) | 386 |
| BpuEI | CTTGAG | 3 cut(s) | 563, 629, 812 |
| Bsa29I | ATCGAT | 1 cut(s) | 738 |
| BsaHI | GRCGYC | 1 cut(s) | 886 |
| BsaJI | CCNNGG | 3 cut(s) | 419, 501, 634 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 33, 34, 130, 257, 285, 532, 702 |
| Bse1I | ACTGG | 6 cut(s) | 52, 135, 254, 777, 833, 1044 |
| Bse3DI | GCAATG | 2 cut(s) | 1081, 1131 |
| BseBI | CCWGG | 2 cut(s) | 502, 1000 |
| BseCI | ATCGAT | 1 cut(s) | 738 |
| BseDI | CCNNGG | 3 cut(s) | 419, 501, 634 |
| BseGI | GGATG | 2 cut(s) | 301, 1049 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 33, 34, 130, 257, 285, 532, 702 |
| BseMI | GCAATG | 2 cut(s) | 1081, 1131 |
| BseMII | CTCAG | 2 cut(s) | 203, 1152 |
| BseNI | ACTGG | 6 cut(s) | 52, 135, 254, 777, 833, 1044 |
| BseRI | GAGGAG | 2 cut(s) | 809, 895 |
| BseX3I | CGGCCG | 1 cut(s) | 290 |
| BseXI | GCAGC | 1 cut(s) | 737 |
| BseYI | CCCAGC | 1 cut(s) | 1153 |
| Bsh1285I | CGRYCG | 1 cut(s) | 293 |
| BshNI | GGYRCC | 1 cut(s) | 807 |
| BshVI | ATCGAT | 1 cut(s) | 738 |
| BsiEI | CGRYCG | 1 cut(s) | 293 |
| BsiSI | CCGG | 2 cut(s) | 293, 1180 |
| BslFI | GGGAC | 5 cut(s) | 50, 133, 149, 679, 770 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 33, 34, 130, 257, 285, 532, 702 |
| BsmFI | GGGAC | 5 cut(s) | 50, 133, 149, 679, 770 |
| Bsp119I | TTCGAA | 1 cut(s) | 386 |
| Bsp143I | GATC | 3 cut(s) | 528, 1020, 1171 |
| BspACI | CCGC | 2 cut(s) | 38, 289 |
| BspCNI | CTCAG | 2 cut(s) | 204, 1153 |
| BspDI | ATCGAT | 1 cut(s) | 738 |
| BspHI | TCATGA | 2 cut(s) | 450, 961 |
| BspLI | GGNNCC | 6 cut(s) | 137, 490, 788, 809, 997, 1004 |
| BspPI | GGATC | 1 cut(s) | 1028 |
| BspT104I | TTCGAA | 1 cut(s) | 386 |
| BspT107I | GGYRCC | 1 cut(s) | 807 |
| BspTI | CTTAAG | 1 cut(s) | 1241 |
| BsrDI | GCAATG | 2 cut(s) | 1081, 1131 |
| BsrI | ACTGG | 6 cut(s) | 52, 135, 254, 777, 833, 1044 |
| BssECI | CCNNGG | 3 cut(s) | 419, 501, 634 |
| BssMI | GATC | 3 cut(s) | 528, 1020, 1171 |
| BssNI | GRCGYC | 1 cut(s) | 886 |
| BssT1I | CCWWGG | 2 cut(s) | 419, 634 |
| Bst2UI | CCWGG | 2 cut(s) | 502, 1000 |
| Bst4CI | ACNGT | 3 cut(s) | 57, 96, 222 |
| Bst6I | CTCTTC | 4 cut(s) | 35, 420, 546, 915 |
| BstACI | GRCGYC | 1 cut(s) | 886 |
| BstAFI | CTTAAG | 1 cut(s) | 1241 |
| BstBI | TTCGAA | 1 cut(s) | 386 |
| BstC8I | GCNNGC | 1 cut(s) | 711 |
| BstDEI | CTNAG | 2 cut(s) | 212, 1161 |
| BstEII | GGTNACC | 1 cut(s) | 365 |
| BstF5I | GGATG | 2 cut(s) | 301, 1049 |
| BstKTI | GATC | 3 cut(s) | 531, 1023, 1174 |
| BstMBI | GATC | 3 cut(s) | 528, 1020, 1171 |
| BstMCI | CGRYCG | 1 cut(s) | 293 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1009 |
| BstNI | CCWGG | 2 cut(s) | 502, 1000 |
| BstPI | GGTNACC | 1 cut(s) | 365 |
| BstSCI | CCNGG | 2 cut(s) | 500, 998 |
| BstSFI | CTRYAG | 1 cut(s) | 1028 |
| BstV1I | GCAGC | 1 cut(s) | 737 |
| BstV2I | GAAGAC | 1 cut(s) | 223 |
| BstZI | CGGCCG | 1 cut(s) | 290 |
| Bsu15I | ATCGAT | 1 cut(s) | 738 |
| BsuI | GTATCC | 2 cut(s) | 331, 419 |
| BsuTUI | ATCGAT | 1 cut(s) | 738 |
| BtrI | CACGTC | 1 cut(s) | 630 |
| BtsCI | GGATG | 2 cut(s) | 301, 1049 |
| Cac8I | GCNNGC | 1 cut(s) | 711 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1160, 1194 |
| CciI | TCATGA | 2 cut(s) | 450, 961 |
| Cfr13I | GGNCC | 4 cut(s) | 136, 488, 786, 1002 |
| ClaI | ATCGAT | 1 cut(s) | 738 |
| Csp6I | GTAC | 1 cut(s) | 76 |
| CviAII | CATG | 3 cut(s) | 451, 868, 962 |
| CviQI | GTAC | 1 cut(s) | 76 |
| DdeI | CTNAG | 2 cut(s) | 212, 1161 |
| DpnI | GATC | 3 cut(s) | 530, 1022, 1173 |
| DpnII | GATC | 3 cut(s) | 528, 1020, 1171 |
| EaeI | YGGCCR | 2 cut(s) | 49, 290 |
| EagI | CGGCCG | 1 cut(s) | 290 |
| Eam1104I | CTCTTC | 4 cut(s) | 35, 420, 546, 915 |
| EarI | CTCTTC | 4 cut(s) | 35, 420, 546, 915 |
| EclXI | CGGCCG | 1 cut(s) | 290 |
| Eco130I | CCWWGG | 2 cut(s) | 419, 634 |
| Eco147I | AGGCCT | 2 cut(s) | 113, 430 |
| Eco47I | GGWCC | 2 cut(s) | 136, 786 |
| Eco52I | CGGCCG | 1 cut(s) | 290 |
| Eco57I | CTGAAG | 2 cut(s) | 16, 857 |
| Eco91I | GGTNACC | 1 cut(s) | 365 |
| EcoO109I | RGGNCCY | 1 cut(s) | 136 |
| EcoO65I | GGTNACC | 1 cut(s) | 365 |
| EcoRI | GAATTC | 2 cut(s) | 8, 613 |
| EcoRII | CCWGG | 2 cut(s) | 500, 998 |
| EcoT14I | CCWWGG | 2 cut(s) | 419, 634 |
| ErhI | CCWWGG | 2 cut(s) | 419, 634 |
| FaeI | CATG | 3 cut(s) | 454, 871, 965 |
| FaiI | YATR | 7 cut(s) | 143, 452, 869, 882, 939, 963, 1076 |
| FaqI | GGGAC | 5 cut(s) | 50, 133, 149, 679, 770 |
| FatI | CATG | 3 cut(s) | 450, 867, 961 |
| FbaI | TGATCA | 1 cut(s) | 1171 |
| Fnu4HI | GCNGC | 2 cut(s) | 290, 726 |
| FokI | GGATG | 2 cut(s) | 308, 1056 |
| Fsp4HI | GCNGC | 2 cut(s) | 290, 726 |
| FspBI | CTAG | 1 cut(s) | 275 |
| GluI | GCNGC | 2 cut(s) | 290, 726 |
| GsaI | CCCAGC | 1 cut(s) | 1157 |
| GsuI | CTGGAG | 1 cut(s) | 237 |
| HapII | CCGG | 2 cut(s) | 293, 1180 |
| Hin1I | GRCGYC | 1 cut(s) | 886 |
| Hin1II | CATG | 3 cut(s) | 454, 871, 965 |
| HindIII | AAGCTT | 2 cut(s) | 605, 620 |
| HinfI | GANTC | 5 cut(s) | 642, 692, 718, 780, 1163 |
| HpaII | CCGG | 2 cut(s) | 293, 1180 |
| HphI | GGTGA | 5 cut(s) | 55, 377, 586, 854, 905 |
| Hpy166II | GTNNAC | 2 cut(s) | 78, 826 |
| Hpy188I | TCNGA | 5 cut(s) | 200, 213, 564, 612, 1270 |
| Hpy8I | GTNNAC | 2 cut(s) | 78, 826 |
| Hpy99I | CGWCG | 1 cut(s) | 631 |
| HpyAV | CCTTC | 4 cut(s) | 10, 103, 395, 832 |
| HpyCH4III | ACNGT | 3 cut(s) | 57, 96, 222 |
| HpyCH4IV | ACGT | 2 cut(s) | 629, 886 |
| HpyCH4V | TGCA | 3 cut(s) | 442, 1081, 1197 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1009 |
| HpyF3I | CTNAG | 2 cut(s) | 212, 1161 |
| HpySE526I | ACGT | 2 cut(s) | 629, 886 |
| Hsp92I | GRCGYC | 1 cut(s) | 886 |
| Hsp92II | CATG | 3 cut(s) | 454, 871, 965 |
| Ksp22I | TGATCA | 1 cut(s) | 1171 |
| Kzo9I | GATC | 3 cut(s) | 528, 1020, 1171 |
| LmnI | GCTCC | 3 cut(s) | 535, 654, 1001 |
| Lsp1109I | GCAGC | 1 cut(s) | 737 |
| LweI | GCATC | 2 cut(s) | 547, 1102 |
| MaeI | CTAG | 1 cut(s) | 275 |
| MaeII | ACGT | 2 cut(s) | 629, 886 |
| MaeIII | GTNAC | 4 cut(s) | 43, 57, 365, 1058 |
| MalI | GATC | 3 cut(s) | 530, 1022, 1173 |
| MboI | GATC | 3 cut(s) | 528, 1020, 1171 |
| MboII | GAAGA | 6 cut(s) | 22, 228, 407, 563, 869, 902 |
| MlyI | GAGTC | 4 cut(s) | 636, 701, 789, 1172 |
| MseI | TTAA | 6 cut(s) | 300, 699, 894, 1092, 1139, 1242 |
| MslI | CAYNNNNRTG | 1 cut(s) | 918 |
| MspCI | CTTAAG | 1 cut(s) | 1241 |
| MspI | CCGG | 2 cut(s) | 293, 1180 |
| MspR9I | CCNGG | 2 cut(s) | 502, 1000 |
| MvaI | CCWGG | 2 cut(s) | 502, 1000 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1009 |
| NdeII | GATC | 3 cut(s) | 528, 1020, 1171 |
| NlaIII | CATG | 3 cut(s) | 454, 871, 965 |
| NlaIV | GGNNCC | 6 cut(s) | 137, 490, 788, 809, 997, 1004 |
| NmuCI | GTSAC | 4 cut(s) | 43, 57, 365, 1058 |
| NspV | TTCGAA | 1 cut(s) | 386 |
| OliI | CACNNNNGTG | 1 cut(s) | 918 |
| PagI | TCATGA | 2 cut(s) | 450, 961 |
| PceI | AGGCCT | 2 cut(s) | 113, 430 |
| PfeI | GAWTC | 1 cut(s) | 718 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 130 |
| PkrI | GCNGC | 2 cut(s) | 291, 727 |
| PleI | GAGTC | 4 cut(s) | 636, 700, 788, 1171 |
| PpsI | GAGTC | 4 cut(s) | 636, 700, 788, 1171 |
| PpuMI | RGGWCCY | 1 cut(s) | 136 |
| Psp5II | RGGWCCY | 1 cut(s) | 136 |
| Psp6I | CCWGG | 2 cut(s) | 500, 998 |
| PspEI | GGTNACC | 1 cut(s) | 365 |
| PspFI | CCCAGC | 1 cut(s) | 1153 |
| PspGI | CCWGG | 2 cut(s) | 500, 998 |
| PspN4I | GGNNCC | 6 cut(s) | 137, 490, 788, 809, 997, 1004 |
| PspPI | GGNCC | 4 cut(s) | 136, 488, 786, 1002 |
| PspPPI | RGGWCCY | 1 cut(s) | 136 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1160, 1194 |
| RsaI | GTAC | 1 cut(s) | 77 |
| RsaNI | GTAC | 1 cut(s) | 76 |
| RseI | CAYNNNNRTG | 1 cut(s) | 918 |
| SaqAI | TTAA | 6 cut(s) | 300, 699, 894, 1092, 1139, 1242 |
| SatI | GCNGC | 2 cut(s) | 290, 726 |
| Sau3AI | GATC | 3 cut(s) | 528, 1020, 1171 |
| Sau96I | GGNCC | 4 cut(s) | 136, 488, 786, 1002 |
| SchI | GAGTC | 4 cut(s) | 636, 701, 789, 1172 |
| ScrFI | CCNGG | 2 cut(s) | 502, 1000 |
| SfaNI | GCATC | 2 cut(s) | 547, 1102 |
| SfcI | CTRYAG | 1 cut(s) | 1028 |
| SfuI | TTCGAA | 1 cut(s) | 386 |
| SinI | GGWCC | 2 cut(s) | 136, 786 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 918 |
| SmlI | CTYRAG | 4 cut(s) | 542, 644, 791, 1241 |
| SmoI | CTYRAG | 4 cut(s) | 542, 644, 791, 1241 |
| SseBI | AGGCCT | 2 cut(s) | 113, 430 |
| SsiI | CCGC | 2 cut(s) | 38, 289 |
| SspMI | CTAG | 1 cut(s) | 275 |
| StuI | AGGCCT | 2 cut(s) | 113, 430 |
| StyD4I | CCNGG | 2 cut(s) | 500, 998 |
| StyI | CCWWGG | 2 cut(s) | 419, 634 |
| TaaI | ACNGT | 3 cut(s) | 57, 96, 222 |
| TaiI | ACGT | 2 cut(s) | 632, 889 |
| TaqI | TCGA | 4 cut(s) | 386, 626, 738, 1106 |
| TatI | WGTACW | 1 cut(s) | 75 |
| TauI | GCSGC | 1 cut(s) | 292 |
| TfiI | GAWTC | 1 cut(s) | 718 |
| Tru1I | TTAA | 6 cut(s) | 300, 699, 894, 1092, 1139, 1242 |
| Tru9I | TTAA | 6 cut(s) | 300, 699, 894, 1092, 1139, 1242 |
| TseFI | GTSAC | 4 cut(s) | 43, 57, 365, 1058 |
| TseI | GCWGC | 1 cut(s) | 725 |
| Tsp45I | GTSAC | 4 cut(s) | 43, 57, 365, 1058 |
| TspDTI | ATGAA | 3 cut(s) | 439, 467, 869 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 130 |
| Vha464I | CTTAAG | 1 cut(s) | 1241 |
| VpaK11BI | GGWCC | 2 cut(s) | 136, 786 |
| XapI | RAATTY | 5 cut(s) | 8, 308, 460, 494, 613 |
| XspI | CTAG | 1 cut(s) | 275 |
| ZraI | GACGTC | 1 cut(s) | 887 |