ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 679 |
| AciI | CCGC | 1 cut(s) | 797 |
| AclWI | GGATC | 4 cut(s) | 7, 20, 603, 788 |
| AcoI | YGGCCR | 1 cut(s) | 142 |
| AcsI | RAATTY | 3 cut(s) | 68, 643, 821 |
| AcuI | CTGAAG | 3 cut(s) | 325, 647, 656 |
| AfaI | GTAC | 4 cut(s) | 152, 596, 782, 983 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 239, 438 |
| AflIII | ACRYGT | 1 cut(s) | 866 |
| AgsI | TTSAA | 5 cut(s) | 76, 289, 314, 688, 821 |
| AjnI | CCWGG | 3 cut(s) | 216, 376, 930 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 175, 207 |
| AluBI | AGCT | 8 cut(s) | 41, 191, 475, 494, 508, 631, 651, 928 |
| AluI | AGCT | 8 cut(s) | 41, 191, 475, 494, 508, 631, 651, 928 |
| Alw21I | GWGCWC | 1 cut(s) | 43 |
| Alw26I | GTCTC | 2 cut(s) | 130, 1028 |
| AlwI | GGATC | 4 cut(s) | 7, 20, 603, 788 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 778 |
| Ama87I | CYCGRG | 1 cut(s) | 612 |
| AoxI | GGCC | 4 cut(s) | 142, 298, 858, 933 |
| ApeKI | GCWGC | 1 cut(s) | 1003 |
| ApoI | RAATTY | 3 cut(s) | 68, 643, 821 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 59, 412 |
| AspS9I | GGNCC | 4 cut(s) | 110, 324, 859, 934 |
| AsuC2I | CCSGG | 1 cut(s) | 937 |
| AsuHPI | GGTGA | 3 cut(s) | 647, 650, 832 |
| AvaI | CYCGRG | 1 cut(s) | 612 |
| AvaII | GGWCC | 2 cut(s) | 110, 324 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 822, 855 |
| BamHI | GGATCC | 1 cut(s) | 12 |
| BanII | GRGCYC | 2 cut(s) | 43, 178 |
| Bbv12I | GWGCWC | 1 cut(s) | 43 |
| BbvI | GCAGC | 1 cut(s) | 990 |
| BccI | CCATC | 1 cut(s) | 934 |
| BciT130I | CCWGG | 3 cut(s) | 218, 378, 932 |
| BciVI | GTATCC | 2 cut(s) | 262, 823 |
| BclI | TGATCA | 2 cut(s) | 202, 712 |
| BcnI | CCSGG | 1 cut(s) | 937 |
| BcoDI | GTCTC | 2 cut(s) | 130, 1028 |
| BfaI | CTAG | 1 cut(s) | 648 |
| BfuI | GTATCC | 2 cut(s) | 262, 823 |
| BisI | GCNGC | 1 cut(s) | 1004 |
| BlsI | GCNGC | 1 cut(s) | 1005 |
| Bme1390I | CCNGG | 4 cut(s) | 218, 378, 932, 937 |
| Bme18I | GGWCC | 2 cut(s) | 110, 324 |
| BmeT110I | CYCGRG | 1 cut(s) | 612 |
| BmgT120I | GGNCC | 4 cut(s) | 110, 324, 859, 934 |
| BmiI | GGNNCC | 1 cut(s) | 14 |
| BmrFI | CCNGG | 4 cut(s) | 218, 378, 932, 937 |
| BmsI | GCATC | 2 cut(s) | 610, 727 |
| BpmI | CTGGAG | 1 cut(s) | 994 |
| BpuEI | CTTGAG | 2 cut(s) | 154, 567 |
| BpuMI | CCSGG | 1 cut(s) | 937 |
| BsaJI | CCNNGG | 3 cut(s) | 106, 216, 912 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 912, 942 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 239, 438 |
| Bse1I | ACTGG | 2 cut(s) | 602, 872 |
| Bse3DI | GCAATG | 1 cut(s) | 396 |
| BseBI | CCWGG | 3 cut(s) | 218, 378, 932 |
| BseDI | CCNNGG | 3 cut(s) | 106, 216, 912 |
| BseGI | GGATG | 1 cut(s) | 945 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 239, 438 |
| BseMI | GCAATG | 1 cut(s) | 396 |
| BseMII | CTCAG | 1 cut(s) | 103 |
| BseNI | ACTGG | 2 cut(s) | 602, 872 |
| BseXI | GCAGC | 1 cut(s) | 990 |
| BseYI | CCCAGC | 2 cut(s) | 273, 631 |
| BshFI | GGCC | 4 cut(s) | 144, 300, 860, 935 |
| BsiHKAI | GWGCWC | 1 cut(s) | 43 |
| BsiHKCI | CYCGRG | 1 cut(s) | 612 |
| BsiSI | CCGG | 2 cut(s) | 937, 950 |
| BslFI | GGGAC | 2 cut(s) | 107, 760 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 239, 438 |
| BsmAI | GTCTC | 2 cut(s) | 130, 1028 |
| BsmFI | GGGAC | 2 cut(s) | 107, 760 |
| BsnI | GGCC | 4 cut(s) | 144, 300, 860, 935 |
| BsoBI | CYCGRG | 1 cut(s) | 612 |
| Bsp1286I | GDGCHC | 2 cut(s) | 43, 178 |
| Bsp1407I | TGTACA | 1 cut(s) | 150 |
| Bsp143I | GATC | 8 cut(s) | 12, 202, 247, 383, 543, 608, 712, 793 |
| Bsp19I | CCATGG | 1 cut(s) | 106 |
| BspACI | CCGC | 1 cut(s) | 797 |
| BspANI | GGCC | 4 cut(s) | 144, 300, 860, 935 |
| BspCNI | CTCAG | 1 cut(s) | 102 |
| BspHI | TCATGA | 2 cut(s) | 331, 996 |
| BspLI | GGNNCC | 1 cut(s) | 14 |
| BspPI | GGATC | 4 cut(s) | 7, 20, 603, 788 |
| BsrDI | GCAATG | 1 cut(s) | 396 |
| BsrGI | TGTACA | 1 cut(s) | 150 |
| BsrI | ACTGG | 2 cut(s) | 602, 872 |
| BssECI | CCNNGG | 3 cut(s) | 106, 216, 912 |
| BssMI | GATC | 8 cut(s) | 12, 202, 247, 383, 543, 608, 712, 793 |
| BssT1I | CCWWGG | 2 cut(s) | 106, 912 |
| Bst2UI | CCWGG | 3 cut(s) | 218, 378, 932 |
| Bst4CI | ACNGT | 2 cut(s) | 362, 990 |
| BstAUI | TGTACA | 1 cut(s) | 150 |
| BstDEI | CTNAG | 2 cut(s) | 89, 698 |
| BstDSI | CCRYGG | 1 cut(s) | 106 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 436 |
| BstF5I | GGATG | 1 cut(s) | 945 |
| BstKTI | GATC | 8 cut(s) | 15, 205, 250, 386, 546, 611, 715, 796 |
| BstMAI | GTCTC | 2 cut(s) | 130, 1028 |
| BstMBI | GATC | 8 cut(s) | 12, 202, 247, 383, 543, 608, 712, 793 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 805, 925 |
| BstNI | CCWGG | 3 cut(s) | 218, 378, 932 |
| BstNSI | RCATGY | 3 cut(s) | 553, 870, 957 |
| BstSCI | CCNGG | 4 cut(s) | 216, 376, 930, 935 |
| BstV1I | GCAGC | 1 cut(s) | 990 |
| BstX2I | RGATCY | 2 cut(s) | 12, 608 |
| BstYI | RGATCY | 2 cut(s) | 12, 608 |
| BsuI | GTATCC | 2 cut(s) | 262, 823 |
| BsuRI | GGCC | 4 cut(s) | 144, 300, 860, 935 |
| BtgI | CCRYGG | 1 cut(s) | 106 |
| BtsCI | GGATG | 1 cut(s) | 945 |
| BtsIMutI | CAGTG | 1 cut(s) | 349 |
| CaiI | CAGNNNCTG | 1 cut(s) | 778 |
| CciI | TCATGA | 2 cut(s) | 331, 996 |
| Cfr13I | GGNCC | 4 cut(s) | 110, 324, 859, 934 |
| Csp6I | GTAC | 4 cut(s) | 151, 595, 781, 982 |
| CviAII | CATG | 8 cut(s) | 107, 140, 296, 332, 550, 867, 954, 997 |
| CviQI | GTAC | 4 cut(s) | 151, 595, 781, 982 |
| DdeI | CTNAG | 2 cut(s) | 89, 698 |
| DpnI | GATC | 8 cut(s) | 14, 204, 249, 385, 545, 610, 714, 795 |
| DpnII | GATC | 8 cut(s) | 12, 202, 247, 383, 543, 608, 712, 793 |
| EaeI | YGGCCR | 1 cut(s) | 142 |
| Ecl136II | GAGCTC | 1 cut(s) | 41 |
| Eco130I | CCWWGG | 2 cut(s) | 106, 912 |
| Eco24I | GRGCYC | 2 cut(s) | 43, 178 |
| Eco32I | GATATC | 1 cut(s) | 532 |
| Eco47I | GGWCC | 2 cut(s) | 110, 324 |
| Eco53kI | GAGCTC | 1 cut(s) | 41 |
| Eco57I | CTGAAG | 3 cut(s) | 325, 647, 656 |
| Eco88I | CYCGRG | 1 cut(s) | 612 |
| EcoICRI | GAGCTC | 1 cut(s) | 41 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 436 |
| EcoO109I | RGGNCCY | 1 cut(s) | 859 |
| EcoRI | GAATTC | 1 cut(s) | 643 |
| EcoRII | CCWGG | 3 cut(s) | 216, 376, 930 |
| EcoRV | GATATC | 1 cut(s) | 532 |
| EcoT14I | CCWWGG | 2 cut(s) | 106, 912 |
| EcoT38I | GRGCYC | 2 cut(s) | 43, 178 |
| ErhI | CCWWGG | 2 cut(s) | 106, 912 |
| FaeI | CATG | 8 cut(s) | 110, 143, 299, 335, 553, 870, 957, 1000 |
| FaqI | GGGAC | 2 cut(s) | 107, 760 |
| FatI | CATG | 8 cut(s) | 106, 139, 295, 331, 549, 866, 953, 996 |
| FbaI | TGATCA | 2 cut(s) | 202, 712 |
| FblI | GTMKAC | 1 cut(s) | 679 |
| Fnu4HI | GCNGC | 1 cut(s) | 1004 |
| FokI | GGATG | 1 cut(s) | 952 |
| FriOI | GRGCYC | 2 cut(s) | 43, 178 |
| Fsp4HI | GCNGC | 1 cut(s) | 1004 |
| FspBI | CTAG | 1 cut(s) | 648 |
| GluI | GCNGC | 1 cut(s) | 1004 |
| GsaI | CCCAGC | 2 cut(s) | 277, 635 |
| GsuI | CTGGAG | 1 cut(s) | 994 |
| HaeIII | GGCC | 4 cut(s) | 144, 300, 860, 935 |
| HapII | CCGG | 2 cut(s) | 937, 950 |
| Hin1II | CATG | 8 cut(s) | 110, 143, 299, 335, 553, 870, 957, 1000 |
| HindIII | AAGCTT | 2 cut(s) | 473, 506 |
| HinfI | GANTC | 4 cut(s) | 55, 76, 580, 702 |
| HpaII | CCGG | 2 cut(s) | 937, 950 |
| HphI | GGTGA | 3 cut(s) | 647, 650, 832 |
| Hpy166II | GTNNAC | 3 cut(s) | 151, 324, 680 |
| Hpy188I | TCNGA | 5 cut(s) | 21, 247, 357, 606, 736 |
| Hpy188III | TCNNGA | 7 cut(s) | 10, 332, 527, 584, 612, 706, 997 |
| Hpy8I | GTNNAC | 3 cut(s) | 151, 324, 680 |
| HpyAV | CCTTC | 2 cut(s) | 26, 239 |
| HpyCH4III | ACNGT | 2 cut(s) | 362, 990 |
| HpyCH4V | TGCA | 2 cut(s) | 740, 901 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 805, 925 |
| HpyF3I | CTNAG | 2 cut(s) | 89, 698 |
| Hsp92II | CATG | 8 cut(s) | 110, 143, 299, 335, 553, 870, 957, 1000 |
| Ksp22I | TGATCA | 2 cut(s) | 202, 712 |
| Kzo9I | GATC | 8 cut(s) | 12, 202, 247, 383, 543, 608, 712, 793 |
| LmnI | GCTCC | 4 cut(s) | 38, 160, 916, 933 |
| Lsp1109I | GCAGC | 1 cut(s) | 990 |
| LweI | GCATC | 2 cut(s) | 610, 727 |
| MaeI | CTAG | 1 cut(s) | 648 |
| MaeIII | GTNAC | 3 cut(s) | 565, 838, 990 |
| MalI | GATC | 8 cut(s) | 14, 204, 249, 385, 545, 610, 714, 795 |
| MboI | GATC | 8 cut(s) | 12, 202, 247, 383, 543, 608, 712, 793 |
| MboII | GAAGA | 4 cut(s) | 393, 408, 459, 662 |
| MflI | RGATCY | 2 cut(s) | 12, 608 |
| MhlI | GDGCHC | 2 cut(s) | 43, 178 |
| MlyI | GAGTC | 1 cut(s) | 574 |
| MmeI | TCCRAC | 2 cut(s) | 344, 813 |
| MnlI | CCTC | 7 cut(s) | 328, 337, 534, 850, 880, 993, 1018 |
| MroXI | GAANNNNTTC | 2 cut(s) | 59, 412 |
| MseI | TTAA | 2 cut(s) | 156, 618 |
| MslI | CAYNNNNRTG | 1 cut(s) | 105 |
| MspI | CCGG | 2 cut(s) | 937, 950 |
| MspR9I | CCNGG | 4 cut(s) | 218, 378, 932, 937 |
| MvaI | CCWGG | 3 cut(s) | 218, 378, 932 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 805, 925 |
| NciI | CCSGG | 1 cut(s) | 937 |
| NcoI | CCATGG | 1 cut(s) | 106 |
| NdeII | GATC | 8 cut(s) | 12, 202, 247, 383, 543, 608, 712, 793 |
| NlaIII | CATG | 8 cut(s) | 110, 143, 299, 335, 553, 870, 957, 1000 |
| NlaIV | GGNNCC | 1 cut(s) | 14 |
| NmeAIII | GCCGAG | 1 cut(s) | 170 |
| NmuCI | GTSAC | 2 cut(s) | 565, 838 |
| NspI | RCATGY | 3 cut(s) | 553, 870, 957 |
| PagI | TCATGA | 2 cut(s) | 331, 996 |
| PciI | ACATGT | 1 cut(s) | 866 |
| PdmI | GAANNNNTTC | 2 cut(s) | 59, 412 |
| PfeI | GAWTC | 3 cut(s) | 55, 76, 702 |
| PfoI | TCCNGGA | 1 cut(s) | 376 |
| PkrI | GCNGC | 1 cut(s) | 1005 |
| PleI | GAGTC | 1 cut(s) | 574 |
| PpsI | GAGTC | 1 cut(s) | 574 |
| PscI | ACATGT | 1 cut(s) | 866 |
| Psp124BI | GAGCTC | 1 cut(s) | 43 |
| Psp6I | CCWGG | 3 cut(s) | 216, 376, 930 |
| PspFI | CCCAGC | 2 cut(s) | 273, 631 |
| PspGI | CCWGG | 3 cut(s) | 216, 376, 930 |
| PspN4I | GGNNCC | 1 cut(s) | 14 |
| PspPI | GGNCC | 4 cut(s) | 110, 324, 859, 934 |
| PstNI | CAGNNNCTG | 1 cut(s) | 778 |
| PsuI | RGATCY | 2 cut(s) | 12, 608 |
| RsaI | GTAC | 4 cut(s) | 152, 596, 782, 983 |
| RsaNI | GTAC | 4 cut(s) | 151, 595, 781, 982 |
| RseI | CAYNNNNRTG | 1 cut(s) | 105 |
| SacI | GAGCTC | 1 cut(s) | 43 |
| SaqAI | TTAA | 2 cut(s) | 156, 618 |
| SatI | GCNGC | 1 cut(s) | 1004 |
| Sau3AI | GATC | 8 cut(s) | 12, 202, 247, 383, 543, 608, 712, 793 |
| Sau96I | GGNCC | 4 cut(s) | 110, 324, 859, 934 |
| SchI | GAGTC | 1 cut(s) | 574 |
| ScrFI | CCNGG | 4 cut(s) | 218, 378, 932, 937 |
| SduI | GDGCHC | 2 cut(s) | 43, 178 |
| SfaNI | GCATC | 2 cut(s) | 610, 727 |
| SinI | GGWCC | 2 cut(s) | 110, 324 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 105 |
| SmlI | CTYRAG | 2 cut(s) | 133, 582 |
| SmoI | CTYRAG | 2 cut(s) | 133, 582 |
| SsiI | CCGC | 1 cut(s) | 797 |
| SspI | AATATT | 1 cut(s) | 745 |
| SspMI | CTAG | 1 cut(s) | 648 |
| SstI | GAGCTC | 1 cut(s) | 43 |
| StyD4I | CCNGG | 4 cut(s) | 216, 376, 930, 935 |
| StyI | CCWWGG | 2 cut(s) | 106, 912 |
| TaaI | ACNGT | 2 cut(s) | 362, 990 |
| TaqI | TCGA | 1 cut(s) | 480 |
| TatI | WGTACW | 2 cut(s) | 150, 594 |
| TfiI | GAWTC | 3 cut(s) | 55, 76, 702 |
| Tru1I | TTAA | 2 cut(s) | 156, 618 |
| Tru9I | TTAA | 2 cut(s) | 156, 618 |
| TscAI | CASTG | 1 cut(s) | 349 |
| TseFI | GTSAC | 2 cut(s) | 565, 838 |
| TseI | GCWGC | 1 cut(s) | 1003 |
| Tsp45I | GTSAC | 2 cut(s) | 565, 838 |
| TspDTI | ATGAA | 3 cut(s) | 68, 603, 866 |
| TspRI | CASTG | 1 cut(s) | 349 |
| VpaK11BI | GGWCC | 2 cut(s) | 110, 324 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 436 |
| XapI | RAATTY | 3 cut(s) | 68, 643, 821 |
| XceI | RCATGY | 3 cut(s) | 553, 870, 957 |
| XmiI | GTMKAC | 1 cut(s) | 679 |
| XmnI | GAANNNNTTC | 2 cut(s) | 59, 412 |
| XspI | CTAG | 1 cut(s) | 648 |