Rh4AG044600

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000147
Physical Location & Seq
Forward (+)
9427732 .. 9434795
7064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG044600.1

Sequence Viewer

Length: 951 bp
ATGGCCTCTCTCAACCTGAATACTTCTCTCTTTGCTAGAGCTTGTGTTGAATTAGATCTTACTAAAACCCAGCCTAGAGCTCTTAGGTTACACGCAGACCCTTTTTCTAATGATTTGAAACTGATCTTCCTCAATTATGAGACTTTATTTGAGGCTTGCTTCTTTTGTGGGAGGTTTGATCACCCTTTAGGTTCTTTCCCTTCTCGTGCTTCCCGTCGGCATTTCCTTATGCTCCCTCACCATCAAAATGAACCAAAGAGTATTCCTAACCAACAGCAAACTTCCGCTCGAATTCCTGATGACTTACCTGATGAGACTTTATTCATCTTTCCTTCTATCCGAGGCCATGATCAGGGCTTTGTACATGCCCCTGCTAGAAATGGATCCCCTCTTCATTTTGCTCAGACTTCACAGAGGACTCATGCGGTTGAATTTCGTTCATTCTCTATGTGTGGTCACGCGGTTTCTCGTTCTTCTTTTCATCGTCCCGATGTCTCTTTTATGGATGCTGCAAGGAATCTAGATGAGACTGTTAATCCAAAAGATACTCTTATATCCTCTTCTCTCCCTATATATGTCCTAGAATCTAATCCTGACTTGCATCCTCTTATAGTTCCCATTCCTGACCCTGTTTTGGTGGATGTCACTTCCTCACCCGTTATTTCGGTTGCTGTTCCTGAGGATGATTTGGTTGCAGATGAGGATCTCGACCCTGATTTAGATAATGAAGAACTTGAGGAAGATGTTGATGTTATGGAGCTTAGGGCTAAGAGATGGCGGCGGAGGCACATAATAGCAGGCTCATCTCTTCTTCTTCGAGGGCAGCAAAGACAGAGCACCACTAGAATCTCCACAACCCCAATAGCAATTTCGACTTTAACCTCAGTATCCAATCCCAGTGATGACGTCGACGAGGTGGTCATAAGAGATTTCGCAGTGGAGGACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

316

Amino Acids

35.43

Weight (kDa)

5.1

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 917
AatII GACGTC 1 cut(s) 909
AccBSI CCGCTC 1 cut(s) 287
AccI GTMKAC 1 cut(s) 909
AccII CGCG 1 cut(s) 461
AciI CCGC 5 cut(s) 285, 425, 461, 778, 781
AclWI GGATC 3 cut(s) 378, 391, 711
AcsI RAATTY 2 cut(s) 291, 431
AcyI GRCGYC 1 cut(s) 906
AfaI GTAC 1 cut(s) 363
AfiI CCNNNNNNNGG 2 cut(s) 352, 634
AgsI TTSAA 3 cut(s) 50, 118, 431
AjuI GAANNNNNNNTTGG 2 cut(s) 853, 885
AluBI AGCT 3 cut(s) 41, 80, 760
AluI AGCT 3 cut(s) 41, 80, 760
Alw21I GWGCWC 2 cut(s) 82, 839
Alw26I GTCTC 4 cut(s) 134, 308, 499, 521
AlwI GGATC 3 cut(s) 378, 391, 711
AoxI GGCC 2 cut(s) 3, 343
ApeKI GCWGC 2 cut(s) 509, 823
ApoI RAATTY 2 cut(s) 291, 431
AsuHPI GGTGA 3 cut(s) 173, 230, 645
AxyI CCTNAGG 1 cut(s) 678
BaeI ACNNNNGTAYC 2 cut(s) 870, 903
BamHI GGATCC 1 cut(s) 383
BanII GRGCYC 1 cut(s) 82
BauI CACGAG 1 cut(s) 204
Bbv12I GWGCWC 2 cut(s) 82, 839
BbvI GCAGC 2 cut(s) 496, 835
BccI CCATC 2 cut(s) 249, 768
BciVI GTATCC 1 cut(s) 898
BclI TGATCA 2 cut(s) 178, 349
BcoDI GTCTC 4 cut(s) 134, 308, 499, 521
BfaI CTAG 6 cut(s) 36, 75, 375, 521, 581, 843
BfuI GTATCC 1 cut(s) 898
BglII AGATCT 1 cut(s) 55
BisI GCNGC 3 cut(s) 510, 779, 824
BlsI GCNGC 3 cut(s) 511, 780, 825
BmiI GGNNCC 1 cut(s) 385
BmrI ACTGGG 1 cut(s) 891
BmsI GCATC 2 cut(s) 496, 610
BmuI ACTGGG 1 cut(s) 891
Bpu10I CCTNAGC 1 cut(s) 761
BpuEI CTTGAG 1 cut(s) 755
BsaBI GATNNNNATC 1 cut(s) 702
BsaHI GRCGYC 1 cut(s) 906
BsaJI CCNNGG 1 cut(s) 340
Bsc4I CCNNNNNNNGG 2 cut(s) 352, 634
Bse1I ACTGG 1 cut(s) 897
Bse21I CCTNAGG 1 cut(s) 678
Bse8I GATNNNNATC 1 cut(s) 702
BseDI CCNNGG 1 cut(s) 340
BseGI GGATG 4 cut(s) 511, 601, 646, 688
BseJI GATNNNNATC 1 cut(s) 702
BseLI CCNNNNNNNGG 2 cut(s) 352, 634
BseMII CTCAG 3 cut(s) 416, 669, 897
BseNI ACTGG 1 cut(s) 897
BseXI GCAGC 2 cut(s) 496, 835
BseYI CCCAGC 1 cut(s) 69
Bsh1236I CGCG 1 cut(s) 461
BshFI GGCC 2 cut(s) 5, 345
BsiHKAI GWGCWC 2 cut(s) 82, 839
BslFI GGGAC 1 cut(s) 471
BslI CCNNNNNNNGG 2 cut(s) 352, 634
BsmAI GTCTC 4 cut(s) 134, 308, 499, 521
BsmFI GGGAC 1 cut(s) 471
BsnI GGCC 2 cut(s) 5, 345
Bsp1286I GDGCHC 2 cut(s) 82, 839
Bsp1407I TGTACA 1 cut(s) 361
Bsp143I GATC 6 cut(s) 55, 123, 178, 349, 383, 703
BspACI CCGC 5 cut(s) 285, 425, 461, 778, 781
BspANI GGCC 2 cut(s) 5, 345
BspCNI CTCAG 3 cut(s) 415, 670, 896
BspFNI CGCG 1 cut(s) 461
BspLI GGNNCC 1 cut(s) 385
BspPI GGATC 3 cut(s) 378, 391, 711
BsrBI CCGCTC 1 cut(s) 287
BsrGI TGTACA 1 cut(s) 361
BsrI ACTGG 1 cut(s) 897
BssECI CCNNGG 1 cut(s) 340
BssMI GATC 6 cut(s) 55, 123, 178, 349, 383, 703
BssNI GRCGYC 1 cut(s) 906
BssSI CACGAG 1 cut(s) 204
Bst2BI CACGAG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 532
Bst6I CTCTTC 3 cut(s) 396, 565, 813
BstACI GRCGYC 1 cut(s) 906
BstAUI TGTACA 1 cut(s) 361
BstC8I GCNNGC 2 cut(s) 157, 799
BstDEI CTNAG 6 cut(s) 83, 402, 678, 761, 768, 883
BstF5I GGATG 4 cut(s) 511, 601, 646, 688
BstFNI CGCG 1 cut(s) 461
BstKTI GATC 6 cut(s) 58, 126, 181, 352, 386, 706
BstMAI GTCTC 4 cut(s) 134, 308, 499, 521
BstMBI GATC 6 cut(s) 55, 123, 178, 349, 383, 703
BstMWI GCNNNNNNNGC 1 cut(s) 784
BstNSI RCATGY 1 cut(s) 368
BstUI CGCG 1 cut(s) 461
BstV1I GCAGC 2 cut(s) 496, 835
BstX2I RGATCY 3 cut(s) 55, 383, 703
BstYI RGATCY 3 cut(s) 55, 383, 703
Bsu36I CCTNAGG 1 cut(s) 678
BsuI GTATCC 1 cut(s) 898
BsuRI GGCC 2 cut(s) 5, 345
BtsCI GGATG 4 cut(s) 511, 601, 646, 688
BtsI GCAGTG 1 cut(s) 942
BtsIMutI CAGTG 2 cut(s) 904, 942
Cac8I GCNNGC 2 cut(s) 157, 799
Csp6I GTAC 1 cut(s) 362
CviAII CATG 3 cut(s) 347, 365, 422
CviQI GTAC 1 cut(s) 362
DdeI CTNAG 6 cut(s) 83, 402, 678, 761, 768, 883
DpnI GATC 6 cut(s) 57, 125, 180, 351, 385, 705
DpnII GATC 6 cut(s) 55, 123, 178, 349, 383, 703
DrdI GACNNNNNNGTC 1 cut(s) 917
DseDI GACNNNNNNGTC 1 cut(s) 917
Eam1104I CTCTTC 3 cut(s) 396, 565, 813
EarI CTCTTC 3 cut(s) 396, 565, 813
EciI GGCGGA 1 cut(s) 796
Ecl136II GAGCTC 1 cut(s) 80
Eco24I GRGCYC 1 cut(s) 82
Eco53kI GAGCTC 1 cut(s) 80
Eco81I CCTNAGG 1 cut(s) 678
EcoICRI GAGCTC 1 cut(s) 80
EcoRI GAATTC 1 cut(s) 291
EcoT38I GRGCYC 1 cut(s) 82
FaeI CATG 3 cut(s) 350, 368, 425
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FaqI GGGAC 1 cut(s) 471
FatI CATG 3 cut(s) 346, 364, 421
FbaI TGATCA 2 cut(s) 178, 349
FblI GTMKAC 1 cut(s) 909
Fnu4HI GCNGC 3 cut(s) 510, 779, 824
FokI GGATG 4 cut(s) 518, 588, 653, 695
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 3 cut(s) 510, 779, 824
FspBI CTAG 6 cut(s) 36, 75, 375, 521, 581, 843
GluI GCNGC 3 cut(s) 510, 779, 824
GsaI CCCAGC 1 cut(s) 73
HaeIII GGCC 2 cut(s) 5, 345
Hin1I GRCGYC 1 cut(s) 906
Hin1II CATG 3 cut(s) 350, 368, 425
HincII GTYRAC 1 cut(s) 910
HindII GTYRAC 1 cut(s) 910
HinfI GANTC 5 cut(s) 418, 517, 584, 846, 944
HphI GGTGA 3 cut(s) 173, 230, 645
Hpy166II GTNNAC 1 cut(s) 910
Hpy188I TCNGA 2 cut(s) 341, 405
Hpy188III TCNNGA 8 cut(s) 296, 488, 521, 593, 623, 677, 707, 948
Hpy8I GTNNAC 1 cut(s) 910
Hpy99I CGWCG 3 cut(s) 219, 911, 914
HpyAV CCTTC 2 cut(s) 210, 342
HpyCH4III ACNGT 1 cut(s) 532
HpyCH4IV ACGT 1 cut(s) 906
HpyCH4V TGCA 3 cut(s) 512, 601, 695
HpyF10VI GCNNNNNNNGC 1 cut(s) 784
HpyF3I CTNAG 6 cut(s) 83, 402, 678, 761, 768, 883
HpySE526I ACGT 1 cut(s) 906
Hsp92I GRCGYC 1 cut(s) 906
Hsp92II CATG 3 cut(s) 350, 368, 425
Ksp22I TGATCA 2 cut(s) 178, 349
Kzo9I GATC 6 cut(s) 55, 123, 178, 349, 383, 703
LmnI GCTCC 2 cut(s) 237, 757
Lsp1109I GCAGC 2 cut(s) 496, 835
LweI GCATC 2 cut(s) 496, 610
MaeI CTAG 6 cut(s) 36, 75, 375, 521, 581, 843
MaeII ACGT 1 cut(s) 906
MaeIII GTNAC 3 cut(s) 87, 455, 643
MalI GATC 6 cut(s) 57, 125, 180, 351, 385, 705
MbiI CCGCTC 1 cut(s) 287
MboI GATC 6 cut(s) 55, 123, 178, 349, 383, 703
MboII GAAGA 9 cut(s) 118, 383, 465, 552, 740, 752, 800, 803, 806
MflI RGATCY 3 cut(s) 55, 383, 703
MhlI GDGCHC 2 cut(s) 82, 839
MluCI AATT 5 cut(s) 50, 133, 291, 431, 867
MlyI GAGTC 2 cut(s) 412, 938
MseI TTAA 2 cut(s) 534, 878
MslI CAYNNNNRTG 1 cut(s) 246
MvnI CGCG 1 cut(s) 461
MwoI GCNNNNNNNGC 1 cut(s) 784
NdeII GATC 6 cut(s) 55, 123, 178, 349, 383, 703
NlaIII CATG 3 cut(s) 350, 368, 425
NlaIV GGNNCC 1 cut(s) 385
NmuCI GTSAC 2 cut(s) 455, 643
NspI RCATGY 1 cut(s) 368
PcsI WCGNNNNNNNCGW 1 cut(s) 211
PfeI GAWTC 3 cut(s) 517, 584, 846
PkrI GCNGC 3 cut(s) 511, 780, 825
PleI GAGTC 2 cut(s) 412, 938
PpsI GAGTC 2 cut(s) 412, 938
Psp124BI GAGCTC 1 cut(s) 82
PspFI CCCAGC 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 385
PsuI RGATCY 3 cut(s) 55, 383, 703
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
RseI CAYNNNNRTG 1 cut(s) 246
SacI GAGCTC 1 cut(s) 82
SalI GTCGAC 1 cut(s) 908
SaqAI TTAA 2 cut(s) 534, 878
SatI GCNGC 3 cut(s) 510, 779, 824
Sau3AI GATC 6 cut(s) 55, 123, 178, 349, 383, 703
SchI GAGTC 2 cut(s) 412, 938
SduI GDGCHC 2 cut(s) 82, 839
SfaNI GCATC 2 cut(s) 496, 610
SgrDI CGTCGACG 1 cut(s) 908
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 734
SmoI CTYRAG 1 cut(s) 734
Sse9I AATT 5 cut(s) 50, 133, 291, 431, 867
SsiI CCGC 5 cut(s) 285, 425, 461, 778, 781
SspMI CTAG 6 cut(s) 36, 75, 375, 521, 581, 843
SstI GAGCTC 1 cut(s) 82
TaaI ACNGT 1 cut(s) 532
TaiI ACGT 1 cut(s) 909
TaqI TCGA 5 cut(s) 289, 708, 817, 872, 909
TasI AATT 5 cut(s) 50, 133, 291, 431, 867
TatI WGTACW 1 cut(s) 361
TauI GCSGC 1 cut(s) 781
TfiI GAWTC 3 cut(s) 517, 584, 846
Tru1I TTAA 2 cut(s) 534, 878
Tru9I TTAA 2 cut(s) 534, 878
TscAI CASTG 2 cut(s) 904, 942
TseFI GTSAC 2 cut(s) 455, 643
TseI GCWGC 2 cut(s) 509, 823
Tsp45I GTSAC 2 cut(s) 455, 643
TspDTI ATGAA 6 cut(s) 264, 313, 383, 429, 470, 741
TspRI CASTG 2 cut(s) 904, 942
XapI RAATTY 2 cut(s) 291, 431
XbaI TCTAGA 1 cut(s) 520
XceI RCATGY 1 cut(s) 368
XmiI GTMKAC 1 cut(s) 909
XspI CTAG 6 cut(s) 36, 75, 375, 521, 581, 843
ZraI GACGTC 1 cut(s) 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.