FvH4_3g44611

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000147
Physical Location & Seq
Forward (+)
37165168 .. 37168088
2921 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g44611.t1

Sequence Viewer

Length: 447 bp
ATGGGGATGATTGAAGAGGTTGGTCAACTAGGTGAGGCTGCGAATCCAATTGAGAAGCTTTGCTGGATTGTGACTACCAAAACAGCCAAAGAGATTGTAACAGTCATTCTTGGAACCTTGGAGAGTACTTCCTCGACCTCAACCTTATCTCCGCCGAAGAAAGTAGGCGGTGGCCACCGTGGCCAGAGGCTAAGCCTTAGGTCCCAGAGGATTTCCACCTTTGCATGTCCGATTGGAACAGTTATGGCGAGACTTGAGAATGATGGCAATGCTTTTCTGCTAAGCTTGGTGATGATTATAACCTTGTCTATTGAATTTGCTGAGAAGGAAGGCAGTGCGTCAACAGGACAGTTTTCCAACCGTGCTAGAGCCTGGAACAAAGCTGATTTTGGCAATATGTTCAAAAGAATGGAGGACCTGAATAAAGAGAGTGAAGAAATCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.15

Weight (kDa)

6.6

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 299
AciI CCGC 2 cut(s) 152, 168
AcoI YGGCCR 2 cut(s) 172, 181
AcsI RAATTY 1 cut(s) 314
AfaI GTAC 1 cut(s) 127
AgsI TTSAA 3 cut(s) 14, 314, 403
AjnI CCWGG 1 cut(s) 371
AluBI AGCT 3 cut(s) 58, 285, 383
AluI AGCT 3 cut(s) 58, 285, 383
Alw26I GTCTC 1 cut(s) 244
AoxI GGCC 2 cut(s) 172, 181
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 314
AspS9I GGNCC 2 cut(s) 201, 415
AsuHPI GGTGA 2 cut(s) 44, 301
AvaII GGWCC 2 cut(s) 201, 415
AxyI CCTNAGG 1 cut(s) 197
BalI TGGCCA 2 cut(s) 174, 183
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 257
BciT130I CCWGG 1 cut(s) 373
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 2 cut(s) 29, 366
BglI GCCNNNNNGGC 1 cut(s) 180
BisI GCNGC 1 cut(s) 39
BlpI GCTNAGC 2 cut(s) 191, 281
BlsI GCNGC 1 cut(s) 40
BmcAI AGTACT 1 cut(s) 127
Bme1390I CCNGG 1 cut(s) 373
Bme18I GGWCC 2 cut(s) 201, 415
BmgT120I GGNCC 2 cut(s) 201, 415
BmiI GGNNCC 2 cut(s) 115, 203
BmrFI CCNGG 1 cut(s) 373
Bpu1102I GCTNAGC 2 cut(s) 191, 281
BpuEI CTTGAG 1 cut(s) 275
BsaJI CCNNGG 2 cut(s) 117, 178
BsaXI ACNNNNNCTCC 2 cut(s) 133, 163
Bse21I CCTNAGG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 274
BseBI CCWGG 1 cut(s) 373
BseDI CCNNGG 2 cut(s) 117, 178
BseGI GGATG 1 cut(s) 12
BseMI GCAATG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 312
BseXI GCAGC 1 cut(s) 25
BshFI GGCC 2 cut(s) 174, 183
BslFI GGGAC 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 2 cut(s) 174, 183
Bsp1720I GCTNAGC 2 cut(s) 191, 281
BspACI CCGC 2 cut(s) 152, 168
BspANI GGCC 2 cut(s) 174, 183
BspCNI CTCAG 1 cut(s) 313
BspLI GGNNCC 2 cut(s) 115, 203
BsrDI GCAATG 1 cut(s) 274
BssECI CCNNGG 2 cut(s) 117, 178
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 5 cut(s) 103, 179, 241, 351, 362
Bst6I CTCTTC 1 cut(s) 9
BstDEI CTNAG 4 cut(s) 191, 197, 281, 321
BstDSI CCRYGG 1 cut(s) 178
BstF5I GGATG 1 cut(s) 12
BstMAI GTCTC 1 cut(s) 244
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstNI CCWGG 1 cut(s) 373
BstNSI RCATGY 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 371
BstV1I GCAGC 1 cut(s) 25
Bsu36I CCTNAGG 1 cut(s) 197
BsuRI GGCC 2 cut(s) 174, 183
BtgI CCRYGG 1 cut(s) 178
BtsCI GGATG 1 cut(s) 12
BtsI GCAGTG 1 cut(s) 340
BtsIMutI CAGTG 1 cut(s) 340
Cfr13I GGNCC 2 cut(s) 201, 415
CseI GACGC 1 cut(s) 327
Csp6I GTAC 1 cut(s) 126
CviAII CATG 1 cut(s) 225
CviQI GTAC 1 cut(s) 126
DdeI CTNAG 4 cut(s) 191, 197, 281, 321
EaeI YGGCCR 2 cut(s) 172, 181
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
EciI GGCGGA 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 117
Eco47I GGWCC 2 cut(s) 201, 415
Eco81I CCTNAGG 1 cut(s) 197
EcoO109I RGGNCCY 2 cut(s) 201, 415
EcoRII CCWGG 1 cut(s) 371
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 1 cut(s) 228
FaiI YATR 4 cut(s) 226, 245, 299, 398
FaqI GGGAC 1 cut(s) 187
FatI CATG 1 cut(s) 224
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 1 cut(s) 19
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 2 cut(s) 29, 366
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 2 cut(s) 174, 183
HgaI GACGC 1 cut(s) 327
Hin1II CATG 1 cut(s) 228
HincII GTYRAC 2 cut(s) 26, 342
HindII GTYRAC 2 cut(s) 26, 342
HindIII AAGCTT 2 cut(s) 56, 283
HinfI GANTC 1 cut(s) 43
HphI GGTGA 2 cut(s) 44, 301
Hpy166II GTNNAC 2 cut(s) 26, 342
Hpy188I TCNGA 1 cut(s) 231
Hpy8I GTNNAC 2 cut(s) 26, 342
HpyAV CCTTC 2 cut(s) 319, 323
HpyCH4III ACNGT 5 cut(s) 103, 179, 241, 351, 362
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpyF3I CTNAG 4 cut(s) 191, 197, 281, 321
Hsp92II CATG 1 cut(s) 228
LpnPI CCDG 7 cut(s) 49, 197, 218, 330, 358, 385, 431
Lsp1109I GCAGC 1 cut(s) 25
MaeI CTAG 2 cut(s) 29, 366
MaeIII GTNAC 2 cut(s) 70, 97
MboII GAAGA 3 cut(s) 26, 169, 446
MfeI CAATTG 1 cut(s) 48
MlsI TGGCCA 2 cut(s) 174, 183
MluCI AATT 2 cut(s) 48, 314
MluNI TGGCCA 2 cut(s) 174, 183
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 7 cut(s) 10, 28, 142, 148, 180, 201, 406
Mox20I TGGCCA 2 cut(s) 174, 183
MscI TGGCCA 2 cut(s) 174, 183
Msp20I TGGCCA 2 cut(s) 174, 183
MspR9I CCNGG 1 cut(s) 373
MunI CAATTG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 373
MwoI GCNNNNNNNGC 1 cut(s) 180
NlaIII CATG 1 cut(s) 228
NlaIV GGNNCC 2 cut(s) 115, 203
NmuCI GTSAC 1 cut(s) 70
NspI RCATGY 1 cut(s) 228
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 1 cut(s) 40
PpuMI RGGWCCY 2 cut(s) 201, 415
PsiI TTATAA 1 cut(s) 299
Psp5II RGGWCCY 2 cut(s) 201, 415
Psp6I CCWGG 1 cut(s) 371
PspGI CCWGG 1 cut(s) 371
PspN4I GGNNCC 2 cut(s) 115, 203
PspPI GGNCC 2 cut(s) 201, 415
PspPPI RGGWCCY 2 cut(s) 201, 415
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
SatI GCNGC 1 cut(s) 39
Sau96I GGNCC 2 cut(s) 201, 415
ScaI AGTACT 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 373
SfiI GGCCNNNNNGGCC 1 cut(s) 180
SinI GGWCC 2 cut(s) 201, 415
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 2 cut(s) 48, 314
SsiI CCGC 2 cut(s) 152, 168
SspMI CTAG 2 cut(s) 29, 366
StyD4I CCNGG 1 cut(s) 371
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 5 cut(s) 103, 179, 241, 351, 362
TaqI TCGA 1 cut(s) 134
TasI AATT 2 cut(s) 48, 314
TatI WGTACW 1 cut(s) 125
TfiI GAWTC 1 cut(s) 43
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 1 cut(s) 38
Tsp45I GTSAC 1 cut(s) 70
TspRI CASTG 1 cut(s) 340
VpaK11BI GGWCC 2 cut(s) 201, 415
XapI RAATTY 1 cut(s) 314
XceI RCATGY 1 cut(s) 228
XspI CTAG 2 cut(s) 29, 366
ZrmI AGTACT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.