RchiOBHm_Chr5g0027881

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000147
Physical Location & Seq
Reverse (-)
21722513 .. 21726119
3607 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30742

Sequence Viewer

Length: 1728 bp
ATGATACAACTATGTTGGAATTGTCATGGGCTGGGGCAATCCATGACAAAGCAGGCTCTTAAGGAGCTGATAAGAAAGTATCGCCCATCCCTTATTTTTCTTTCGGAAACTCGAATGAAGGATAAGGACGTCAAATCTTTAAGGAAGGAATGTAAGTTTCCCTATGGCACTACTGTGAAACCCATCAAAACTGCTGGGGGTCTGGCAATGTGGTGGGATAACACTGTTTCAGTTCAAATTCTCTCTAAATCCAAATTTCTAATTGATACGGTGGTCAAGTTCAAGTGTGATGATTCTTTGGTTTGTTTCTCGTGGTTCTATGGACCACCGGACAAGAAAAGTAGACCTGGGTTTTGGAATAGCTGTGCTAACTTAGCTGGTTCTTTTGATCTCCCGTGGCTTTGTGCCGGGGATTTTAATGAATTCTTATGGCCTCATGAAAAGGAGGGTGGCAACCCTTGGAATCCAGGTAGGAGGCGGTTTCTTCGTGAGTTTATGGAAGCTAATGACCTTATTGAGCTTCAATCAAAGGGTCAGAAGCTTACATGGTGCAATAATTGGTATGATGGTGGGCTTATTAAGATAAAGTTGGACAGGGGAGTGGTAAACACAAGGTGGTTGGAGCGGTGGCCTGATTCGTATTCTGATCCTACAACGGTTCGTGGGCCAAAACTTTTTAAGTTTGAACCAATGTGGGTTGATGATCTGGAGTGTAGAGATGTTGTGGAGGCTTCTTGGACCGATAACTCTCCAACTGTTGGTGCTGCGCAATGGGTTACAAGAAGTCAAAGATGTAGTCATGATTTATCTAAGTGGAGCAAGACCAAATTCGCTAATAATCGCAAGGCCATTAATAGCAGAACAGAGGAGCTCCAAGTCATACAGGAGTCTACATCTGCTGAAGCTCGTAACAGGGAGTCTTTTTTAATTGGAGAAATTCATTCTTTATGGAAAAAAGAGGAGAAATACTGGACTCAACGATCCAGAGTTAATTGGCTTAAAGCTGGGGACTCAAACACCAAATTCTTTCATTTGACAACCATCCAAAGAAGGCAGCGGAACAAAGTACTTAAGCTTAAATCGGCCAGTGATGTTTGGCTGGACCGTGAGGGCACCATTCGGTCTGAAGTGGAGAATTATTTCAAGGACATCTTCAAGAGCTCTGGTGAGAGAGATTGGGATGAGGCCTTACGGGCGGTGGCACCGGTTACTAGTCCTGAAATGAACTCTGCTCTCACCAAAGAATTCACTGCTGAAGAAGTTAAAGAGGCTGCTTTCCATATGGGGGCTGACAAGGCCCCGGGCCCGGATGGTTTTCATGGGATATTCTTTCAGAATTTTTGGAACATCATCAATGAGACTATGAGTGCTACTGCAACAGAATTTCATGAAACTGCTCATATTCTTTCGGATCTGAACAAGACAAACATTGTTCTCATTCCAAAAATCCCTTGTCCTGAGAAGGTCGATCAATTCCACCCTATTAGTCTTTGCAATTACTCATACAAGATTCTCTCTAAAATGCTAGCGAATCGATTGAAAGAGTTTCTGCCAAGTATCATATCTCCTCATCAGTGTGCTTTTGTTCCGGGTCGTCAAATTCAAGATAACATTTTGGTTGCGCATGAGGCCTTTCATTATTTGAAGTTGAGGAAATCTGGAGACATTCAAGAGCTTGCTCTCAAGTTGGATATGAGCAAGGCTTACGATAGAGTGGAATGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

575

Amino Acids

66.6

Weight (kDa)

8.82

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 6 - 150 1.9e-07 Endonuclease/Exonuclease/phosphatase family
RVT_1 PF00078 489 - 575 1.7e-11 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 132
Acc16I TGCGCA 2 cut(s) 768, 1623
AccB1I GGYRCC 2 cut(s) 1112, 1201
AccB7I CCANNNNNTGG 1 cut(s) 758
AccBSI CCGCTC 1 cut(s) 625
AccI GTMKAC 2 cut(s) 343, 890
AciI CCGC 4 cut(s) 478, 625, 1057, 1196
AclWI GGATC 3 cut(s) 641, 975, 1419
AcoI YGGCCR 1 cut(s) 1083
AcuI CTGAAG 3 cut(s) 921, 1146, 1275
AcyI GRCGYC 1 cut(s) 129
AdeI CACNNNGTG 1 cut(s) 615
AfaI GTAC 1 cut(s) 1068
AfiI CCNNNNNNNGG 3 cut(s) 758, 1285, 1306
AflII CTTAAG 2 cut(s) 59, 1070
AgeI ACCGGT 1 cut(s) 1204
AhlI ACTAGT 1 cut(s) 1211
AjnI CCWGG 2 cut(s) 346, 466
AleI CACNNNNGTG 1 cut(s) 173
Alw21I GWGCWC 2 cut(s) 873, 1163
Alw26I GTCTC 2 cut(s) 1352, 1656
AlwI GGATC 3 cut(s) 641, 975, 1419
Ama87I CYCGRG 1 cut(s) 1300
AoxI GGCC 9 cut(s) 431, 629, 665, 846, 1083, 1185, 1296, 1303, 1629
ApaI GGGCCC 1 cut(s) 1307
ApeKI GCWGC 3 cut(s) 764, 1054, 1271
ArsI GACNNNNNNTTYG 4 cut(s) 336, 368, 781, 813
AseI ATTAAT 1 cut(s) 852
AsiGI ACCGGT 1 cut(s) 1204
Asp700I GAANNNNTTC 1 cut(s) 1139
AspLEI GCGC 2 cut(s) 769, 1624
AspS9I GGNCC 7 cut(s) 323, 665, 738, 1102, 1297, 1303, 1304
AsuC2I CCSGG 5 cut(s) 409, 1301, 1302, 1307, 1590
AsuHPI GGTGA 2 cut(s) 1178, 1228
AsuNHI GCTAGC 1 cut(s) 1525
AvaI CYCGRG 1 cut(s) 1300
AvaII GGWCC 3 cut(s) 323, 738, 1102
BaeGI GKGCMC 2 cut(s) 1115, 1307
BaeI ACNNNNGTAYC 2 cut(s) 258, 291
BanI GGYRCC 2 cut(s) 1112, 1201
BanII GRGCYC 3 cut(s) 873, 1163, 1307
BauI CACGAG 1 cut(s) 310
Bbv12I GWGCWC 2 cut(s) 873, 1163
BbvI GCAGC 3 cut(s) 751, 1066, 1258
BccI CCATC 5 cut(s) 94, 191, 560, 1049, 1304
BciT130I CCWGG 2 cut(s) 348, 468
BcnI CCSGG 5 cut(s) 409, 1301, 1302, 1307, 1590
BcoDI GTCTC 2 cut(s) 1352, 1656
BcuI ACTAGT 1 cut(s) 1211
BfaI CTAG 2 cut(s) 1212, 1526
BfrI CTTAAG 2 cut(s) 59, 1070
BglI GCCNNNNNGGC 1 cut(s) 1193
BisI GCNGC 3 cut(s) 765, 1055, 1272
BlsI GCNGC 3 cut(s) 766, 1056, 1273
BmcAI AGTACT 1 cut(s) 1068
Bme1390I CCNGG 7 cut(s) 348, 409, 468, 1301, 1302, 1307, 1590
Bme18I GGWCC 3 cut(s) 323, 738, 1102
BmeT110I CYCGRG 1 cut(s) 1300
BmgT120I GGNCC 7 cut(s) 323, 665, 738, 1102, 1297, 1303, 1304
BmiI GGNNCC 4 cut(s) 1114, 1203, 1299, 1305
BmrFI CCNGG 7 cut(s) 348, 409, 468, 1301, 1302, 1307, 1590
BmtI GCTAGC 1 cut(s) 1529
BpmI CTGGAG 2 cut(s) 728, 1680
BpuEI CTTGAG 1 cut(s) 1667
BpuMI CCSGG 5 cut(s) 409, 1301, 1302, 1307, 1590
Bsa29I ATCGAT 1 cut(s) 1534
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 6 cut(s) 347, 395, 408, 458, 1299, 1300
BsaWI WCCGGW 2 cut(s) 328, 1204
Bsc4I CCNNNNNNNGG 3 cut(s) 758, 1285, 1306
Bse118I RCCGGY 1 cut(s) 1204
Bse1I ACTGG 2 cut(s) 974, 1086
Bse3DI GCAATG 2 cut(s) 213, 776
BseBI CCWGG 2 cut(s) 348, 468
BseCI ATCGAT 1 cut(s) 1534
BseDI CCNNGG 6 cut(s) 347, 395, 408, 458, 1299, 1300
BseGI GGATG 4 cut(s) 86, 1041, 1186, 1315
BseLI CCNNNNNNNGG 3 cut(s) 758, 1285, 1306
BseMI GCAATG 2 cut(s) 213, 776
BseMII CTCAG 1 cut(s) 1449
BseNI ACTGG 2 cut(s) 974, 1086
BseRI GAGGAG 3 cut(s) 881, 974, 1557
BseSI GKGCMC 2 cut(s) 1115, 1307
BseXI GCAGC 3 cut(s) 751, 1066, 1258
BseYI CCCAGC 3 cut(s) 31, 194, 1004
BshFI GGCC 9 cut(s) 433, 631, 667, 848, 1085, 1187, 1298, 1305, 1631
BshNI GGYRCC 2 cut(s) 1112, 1201
BshTI ACCGGT 1 cut(s) 1204
BshVI ATCGAT 1 cut(s) 1534
BsiHKAI GWGCWC 2 cut(s) 873, 1163
BsiHKCI CYCGRG 1 cut(s) 1300
BsiSI CCGG 6 cut(s) 329, 408, 1205, 1301, 1307, 1589
BslFI GGGAC 1 cut(s) 1022
BslI CCNNNNNNNGG 3 cut(s) 758, 1285, 1306
BsmAI GTCTC 2 cut(s) 1352, 1656
BsmFI GGGAC 1 cut(s) 1022
BsnI GGCC 9 cut(s) 433, 631, 667, 848, 1085, 1187, 1298, 1305, 1631
BsoBI CYCGRG 1 cut(s) 1300
Bsp120I GGGCCC 1 cut(s) 1303
Bsp1286I GDGCHC 4 cut(s) 873, 1115, 1163, 1307
Bsp143I GATC 6 cut(s) 388, 646, 703, 980, 1411, 1468
BspACI CCGC 4 cut(s) 478, 625, 1057, 1196
BspANI GGCC 9 cut(s) 433, 631, 667, 848, 1085, 1187, 1298, 1305, 1631
BspCNI CTCAG 1 cut(s) 1450
BspDI ATCGAT 1 cut(s) 1534
BspHI TCATGA 3 cut(s) 436, 799, 1387
BspLI GGNNCC 4 cut(s) 1114, 1203, 1299, 1305
BspOI GCTAGC 1 cut(s) 1529
BspPI GGATC 3 cut(s) 641, 975, 1419
BspT107I GGYRCC 2 cut(s) 1112, 1201
BspTI CTTAAG 2 cut(s) 59, 1070
BsrBI CCGCTC 1 cut(s) 625
BsrDI GCAATG 2 cut(s) 213, 776
BsrFI RCCGGY 1 cut(s) 1204
BsrI ACTGG 2 cut(s) 974, 1086
BssAI RCCGGY 1 cut(s) 1204
BssECI CCNNGG 6 cut(s) 347, 395, 408, 458, 1299, 1300
BssMI GATC 6 cut(s) 388, 646, 703, 980, 1411, 1468
BssNI GRCGYC 1 cut(s) 129
BssSI CACGAG 1 cut(s) 310
BssT1I CCWWGG 1 cut(s) 458
Bst2BI CACGAG 1 cut(s) 310
Bst2UI CCWGG 2 cut(s) 348, 468
Bst4CI ACNGT 6 cut(s) 175, 226, 271, 658, 757, 1106
BstACI GRCGYC 1 cut(s) 129
BstAFI CTTAAG 2 cut(s) 59, 1070
BstC8I GCNNGC 3 cut(s) 54, 1527, 1677
BstDEI CTNAG 3 cut(s) 373, 810, 1458
BstDSI CCRYGG 1 cut(s) 395
BstF5I GGATG 4 cut(s) 86, 1041, 1186, 1315
BstHHI GCGC 2 cut(s) 769, 1624
BstKTI GATC 6 cut(s) 391, 649, 706, 983, 1414, 1471
BstMAI GTCTC 2 cut(s) 1352, 1656
BstMBI GATC 6 cut(s) 388, 646, 703, 980, 1411, 1468
BstMWI GCNNNNNNNGC 4 cut(s) 374, 1193, 1295, 1628
BstNI CCWGG 2 cut(s) 348, 468
BstSCI CCNGG 7 cut(s) 346, 407, 466, 1299, 1300, 1305, 1588
BstSLI GKGCMC 2 cut(s) 1115, 1307
BstV1I GCAGC 3 cut(s) 751, 1066, 1258
BstX2I RGATCY 1 cut(s) 1411
BstYI RGATCY 1 cut(s) 1411
Bsu15I ATCGAT 1 cut(s) 1534
BsuRI GGCC 9 cut(s) 433, 631, 667, 848, 1085, 1187, 1298, 1305, 1631
BsuTUI ATCGAT 1 cut(s) 1534
BtgI CCRYGG 1 cut(s) 395
BtsCI GGATG 4 cut(s) 86, 1041, 1186, 1315
BtsI GCAGTG 1 cut(s) 1248
BtsIMutI CAGTG 4 cut(s) 222, 1093, 1248, 1580
Cac8I GCNNGC 3 cut(s) 54, 1527, 1677
CciI TCATGA 3 cut(s) 436, 799, 1387
CfoI GCGC 2 cut(s) 769, 1624
Cfr10I RCCGGY 1 cut(s) 1204
Cfr13I GGNCC 7 cut(s) 323, 665, 738, 1102, 1297, 1303, 1304
Cfr9I CCCGGG 1 cut(s) 1300
ClaI ATCGAT 1 cut(s) 1534
Csp6I GTAC 1 cut(s) 1067
CspAI ACCGGT 1 cut(s) 1204
CviAII CATG 8 cut(s) 26, 43, 437, 546, 800, 1319, 1388, 1625
CviQI GTAC 1 cut(s) 1067
DdeI CTNAG 3 cut(s) 373, 810, 1458
DpnI GATC 6 cut(s) 390, 648, 705, 982, 1413, 1470
DpnII GATC 6 cut(s) 388, 646, 703, 980, 1411, 1468
DraIII CACNNNGTG 1 cut(s) 615
EaeI YGGCCR 1 cut(s) 1083
Ecl136II GAGCTC 2 cut(s) 871, 1161
Eco130I CCWWGG 1 cut(s) 458
Eco147I AGGCCT 2 cut(s) 1187, 1631
Eco24I GRGCYC 3 cut(s) 873, 1163, 1307
Eco47I GGWCC 3 cut(s) 323, 738, 1102
Eco53kI GAGCTC 2 cut(s) 871, 1161
Eco57I CTGAAG 3 cut(s) 921, 1146, 1275
Eco88I CYCGRG 1 cut(s) 1300
EcoICRI GAGCTC 2 cut(s) 871, 1161
EcoO109I RGGNCCY 1 cut(s) 1297
EcoRI GAATTC 2 cut(s) 422, 1244
EcoRII CCWGG 2 cut(s) 346, 466
EcoT14I CCWWGG 1 cut(s) 458
EcoT38I GRGCYC 3 cut(s) 873, 1163, 1307
ErhI CCWWGG 1 cut(s) 458
FaeI CATG 8 cut(s) 29, 46, 440, 549, 803, 1322, 1391, 1628
FalI AAGNNNNNCTT 2 cut(s) 1136, 1168
FaqI GGGAC 1 cut(s) 1022
FatI CATG 8 cut(s) 25, 42, 436, 545, 799, 1318, 1387, 1624
FauNDI CATATG 1 cut(s) 1281
FblI GTMKAC 2 cut(s) 343, 890
Fnu4HI GCNGC 3 cut(s) 765, 1055, 1272
FokI GGATG 4 cut(s) 73, 1028, 1193, 1322
FriOI GRGCYC 3 cut(s) 873, 1163, 1307
Fsp4HI GCNGC 3 cut(s) 765, 1055, 1272
FspBI CTAG 2 cut(s) 1212, 1526
FspI TGCGCA 2 cut(s) 768, 1623
GlaI GCGC 2 cut(s) 768, 1623
GluI GCNGC 3 cut(s) 765, 1055, 1272
GsaI CCCAGC 3 cut(s) 35, 198, 1008
GsuI CTGGAG 2 cut(s) 728, 1680
HaeIII GGCC 9 cut(s) 433, 631, 667, 848, 1085, 1187, 1298, 1305, 1631
HapII CCGG 6 cut(s) 329, 408, 1205, 1301, 1307, 1589
HhaI GCGC 2 cut(s) 769, 1624
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 8 cut(s) 29, 46, 440, 549, 803, 1322, 1391, 1628
Hin6I GCGC 2 cut(s) 767, 1622
HinP1I GCGC 2 cut(s) 767, 1622
HindIII AAGCTT 2 cut(s) 539, 1073
HinfI GANTC 9 cut(s) 293, 463, 635, 887, 917, 973, 1010, 1510, 1531
HpaII CCGG 6 cut(s) 329, 408, 1205, 1301, 1307, 1589
HphI GGTGA 2 cut(s) 1178, 1228
Hpy166II GTNNAC 3 cut(s) 344, 607, 891
Hpy188I TCNGA 7 cut(s) 106, 537, 646, 1126, 1335, 1411, 1416
Hpy8I GTNNAC 3 cut(s) 344, 607, 891
HpyAV CCTTC 4 cut(s) 112, 139, 1044, 1456
HpyCH4III ACNGT 6 cut(s) 175, 226, 271, 658, 757, 1106
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 3 cut(s) 552, 1376, 1494
HpyF10VI GCNNNNNNNGC 4 cut(s) 374, 1193, 1295, 1628
HpyF3I CTNAG 3 cut(s) 373, 810, 1458
HpySE526I ACGT 1 cut(s) 129
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 8 cut(s) 29, 46, 440, 549, 803, 1322, 1391, 1628
HspAI GCGC 2 cut(s) 767, 1622
Kzo9I GATC 6 cut(s) 388, 646, 703, 980, 1411, 1468
LmnI GCTCC 5 cut(s) 64, 622, 816, 868, 876
Lsp1109I GCAGC 3 cut(s) 751, 1066, 1258
MaeI CTAG 2 cut(s) 1212, 1526
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 3 cut(s) 775, 908, 1207
MalI GATC 6 cut(s) 390, 648, 705, 982, 1413, 1470
MbiI CCGCTC 1 cut(s) 625
MboI GATC 6 cut(s) 388, 646, 703, 980, 1411, 1468
MboII GAAGA 3 cut(s) 476, 1144, 1268
MflI RGATCY 1 cut(s) 1411
MhlI GDGCHC 4 cut(s) 873, 1115, 1163, 1307
MlyI GAGTC 4 cut(s) 896, 926, 967, 1004
MmeI TCCRAC 4 cut(s) 570, 600, 776, 1668
MroXI GAANNNNTTC 1 cut(s) 1139
MslI CAYNNNNRTG 2 cut(s) 173, 1575
MspA1I CMGCKG 1 cut(s) 1057
MspCI CTTAAG 2 cut(s) 59, 1070
MspI CCGG 6 cut(s) 329, 408, 1205, 1301, 1307, 1589
MspR9I CCNGG 7 cut(s) 348, 409, 468, 1301, 1302, 1307, 1590
MvaI CCWGG 2 cut(s) 348, 468
MwoI GCNNNNNNNGC 4 cut(s) 374, 1193, 1295, 1628
NciI CCSGG 5 cut(s) 409, 1301, 1302, 1307, 1590
NdeI CATATG 1 cut(s) 1281
NdeII GATC 6 cut(s) 388, 646, 703, 980, 1411, 1468
NheI GCTAGC 1 cut(s) 1525
NlaIII CATG 8 cut(s) 29, 46, 440, 549, 803, 1322, 1391, 1628
NlaIV GGNNCC 4 cut(s) 1114, 1203, 1299, 1305
NsbI TGCGCA 2 cut(s) 768, 1623
OliI CACNNNNGTG 1 cut(s) 173
PagI TCATGA 3 cut(s) 436, 799, 1387
PceI AGGCCT 2 cut(s) 1187, 1631
PdmI GAANNNNTTC 1 cut(s) 1139
PfeI GAWTC 5 cut(s) 293, 463, 635, 1510, 1531
PflMI CCANNNNNTGG 1 cut(s) 758
PinAI ACCGGT 1 cut(s) 1204
PkrI GCNGC 3 cut(s) 766, 1056, 1273
PleI GAGTC 4 cut(s) 895, 925, 967, 1004
PpsI GAGTC 4 cut(s) 895, 925, 967, 1004
PshBI ATTAAT 1 cut(s) 852
Psp124BI GAGCTC 2 cut(s) 873, 1163
Psp6I CCWGG 2 cut(s) 346, 466
PspFI CCCAGC 3 cut(s) 31, 194, 1004
PspGI CCWGG 2 cut(s) 346, 466
PspN4I GGNNCC 4 cut(s) 1114, 1203, 1299, 1305
PspOMI GGGCCC 1 cut(s) 1303
PspPI GGNCC 7 cut(s) 323, 665, 738, 1102, 1297, 1303, 1304
PsuI RGATCY 1 cut(s) 1411
RsaI GTAC 1 cut(s) 1068
RsaNI GTAC 1 cut(s) 1067
RseI CAYNNNNRTG 2 cut(s) 173, 1575
SacI GAGCTC 2 cut(s) 873, 1163
SatI GCNGC 3 cut(s) 765, 1055, 1272
Sau3AI GATC 6 cut(s) 388, 646, 703, 980, 1411, 1468
Sau96I GGNCC 7 cut(s) 323, 665, 738, 1102, 1297, 1303, 1304
ScaI AGTACT 1 cut(s) 1068
SchI GAGTC 4 cut(s) 896, 926, 967, 1004
ScrFI CCNGG 7 cut(s) 348, 409, 468, 1301, 1302, 1307, 1590
SduI GDGCHC 4 cut(s) 873, 1115, 1163, 1307
SinI GGWCC 3 cut(s) 323, 738, 1102
SmaI CCCGGG 1 cut(s) 1302
SmiMI CAYNNNNRTG 2 cut(s) 173, 1575
SmlI CTYRAG 3 cut(s) 59, 1070, 1682
SmoI CTYRAG 3 cut(s) 59, 1070, 1682
SpeI ACTAGT 1 cut(s) 1211
SseBI AGGCCT 2 cut(s) 1187, 1631
SsiI CCGC 4 cut(s) 478, 625, 1057, 1196
SspMI CTAG 2 cut(s) 1212, 1526
SstI GAGCTC 2 cut(s) 873, 1163
StuI AGGCCT 2 cut(s) 1187, 1631
StyD4I CCNGG 7 cut(s) 346, 407, 466, 1299, 1300, 1305, 1588
StyI CCWWGG 1 cut(s) 458
TaaI ACNGT 6 cut(s) 175, 226, 271, 658, 757, 1106
TaiI ACGT 1 cut(s) 132
TaqI TCGA 3 cut(s) 112, 1467, 1534
TaqII GACCGA 2 cut(s) 755, 1110
TatI WGTACW 1 cut(s) 1066
TfiI GAWTC 5 cut(s) 293, 463, 635, 1510, 1531
TscAI CASTG 4 cut(s) 229, 1093, 1255, 1580
TseI GCWGC 3 cut(s) 764, 1054, 1271
TspMI CCCGGG 1 cut(s) 1300
TspRI CASTG 4 cut(s) 229, 1093, 1255, 1580
Van91I CCANNNNNTGG 1 cut(s) 758
Vha464I CTTAAG 2 cut(s) 59, 1070
VpaK11BI GGWCC 3 cut(s) 323, 738, 1102
VspI ATTAAT 1 cut(s) 852
XmaI CCCGGG 1 cut(s) 1300
XmiI GTMKAC 2 cut(s) 343, 890
XmnI GAANNNNTTC 1 cut(s) 1139
XspI CTAG 2 cut(s) 1212, 1526
ZraI GACGTC 1 cut(s) 130
ZrmI AGTACT 1 cut(s) 1068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.