ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 248, 277 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 665 |
| AciI | CCGC | 2 cut(s) | 72, 242 |
| AclI | AACGTT | 1 cut(s) | 348 |
| AfaI | GTAC | 1 cut(s) | 502 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 665 |
| AgsI | TTSAA | 4 cut(s) | 239, 419, 542, 562 |
| AhlI | ACTAGT | 1 cut(s) | 262 |
| AjnI | CCWGG | 2 cut(s) | 152, 251 |
| AluBI | AGCT | 6 cut(s) | 82, 297, 302, 414, 527, 558 |
| AluI | AGCT | 6 cut(s) | 82, 297, 302, 414, 527, 558 |
| AoxI | GGCC | 2 cut(s) | 73, 384 |
| AspS9I | GGNCC | 2 cut(s) | 74, 688 |
| AsuHPI | GGTGA | 1 cut(s) | 327 |
| AvaII | GGWCC | 1 cut(s) | 688 |
| BaeGI | GKGCMC | 2 cut(s) | 251, 280 |
| BanI | GGYRCC | 2 cut(s) | 248, 277 |
| BbsI | GAAGAC | 1 cut(s) | 662 |
| BbvCI | CCTCAGC | 1 cut(s) | 554 |
| BccI | CCATC | 1 cut(s) | 62 |
| BceAI | ACGGC | 2 cut(s) | 100, 151 |
| BciT130I | CCWGG | 2 cut(s) | 154, 253 |
| BcuI | ACTAGT | 1 cut(s) | 262 |
| BfaI | CTAG | 5 cut(s) | 263, 326, 369, 477, 524 |
| BfmI | CTRYAG | 2 cut(s) | 34, 222 |
| BglII | AGATCT | 1 cut(s) | 171 |
| BisI | GCNGC | 1 cut(s) | 73 |
| BlpI | GCTNAGC | 1 cut(s) | 298 |
| BlsI | GCNGC | 1 cut(s) | 74 |
| Bme1390I | CCNGG | 2 cut(s) | 154, 253 |
| Bme18I | GGWCC | 1 cut(s) | 688 |
| BmgT120I | GGNCC | 2 cut(s) | 74, 688 |
| BmiI | GGNNCC | 2 cut(s) | 250, 279 |
| BmrFI | CCNGG | 2 cut(s) | 154, 253 |
| BmsI | GCATC | 3 cut(s) | 186, 208, 703 |
| BpiI | GAAGAC | 1 cut(s) | 662 |
| Bpu10I | CCTNAGC | 1 cut(s) | 554 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 298 |
| BpuEI | CTTGAG | 2 cut(s) | 668, 714 |
| BsaJI | CCNNGG | 3 cut(s) | 41, 152, 387 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 665 |
| Bse1I | ACTGG | 1 cut(s) | 468 |
| Bse3DI | GCAATG | 1 cut(s) | 493 |
| BseBI | CCWGG | 2 cut(s) | 154, 253 |
| BseDI | CCNNGG | 3 cut(s) | 41, 152, 387 |
| BseGI | GGATG | 2 cut(s) | 201, 579 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 665 |
| BseMI | GCAATG | 1 cut(s) | 493 |
| BseMII | CTCAG | 4 cut(s) | 312, 372, 568, 602 |
| BseNI | ACTGG | 1 cut(s) | 468 |
| BseSI | GKGCMC | 2 cut(s) | 251, 280 |
| BseYI | CCCAGC | 1 cut(s) | 244 |
| BshFI | GGCC | 2 cut(s) | 75, 386 |
| BshNI | GGYRCC | 2 cut(s) | 248, 277 |
| BsiSI | CCGG | 1 cut(s) | 102 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 665 |
| BsnI | GGCC | 2 cut(s) | 75, 386 |
| Bsp1286I | GDGCHC | 2 cut(s) | 251, 280 |
| Bsp143I | GATC | 3 cut(s) | 171, 591, 622 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 298 |
| BspACI | CCGC | 2 cut(s) | 72, 242 |
| BspANI | GGCC | 2 cut(s) | 75, 386 |
| BspCNI | CTCAG | 4 cut(s) | 311, 373, 567, 601 |
| BspLI | GGNNCC | 2 cut(s) | 250, 279 |
| BspQI | GCTCTTC | 1 cut(s) | 399 |
| BspT107I | GGYRCC | 2 cut(s) | 248, 277 |
| BsrDI | GCAATG | 1 cut(s) | 493 |
| BsrI | ACTGG | 1 cut(s) | 468 |
| BssECI | CCNNGG | 3 cut(s) | 41, 152, 387 |
| BssMI | GATC | 3 cut(s) | 171, 591, 622 |
| BssT1I | CCWWGG | 1 cut(s) | 41 |
| Bst2UI | CCWGG | 2 cut(s) | 154, 253 |
| Bst6I | CTCTTC | 1 cut(s) | 399 |
| BstC8I | GCNNGC | 2 cut(s) | 304, 412 |
| BstDEI | CTNAG | 4 cut(s) | 298, 381, 554, 588 |
| BstF5I | GGATG | 2 cut(s) | 201, 579 |
| BstKTI | GATC | 3 cut(s) | 174, 594, 625 |
| BstMBI | GATC | 3 cut(s) | 171, 591, 622 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 303, 365 |
| BstNI | CCWGG | 2 cut(s) | 154, 253 |
| BstSCI | CCNGG | 2 cut(s) | 152, 251 |
| BstSFI | CTRYAG | 2 cut(s) | 34, 222 |
| BstSLI | GKGCMC | 2 cut(s) | 251, 280 |
| BstV2I | GAAGAC | 1 cut(s) | 662 |
| BstX2I | RGATCY | 1 cut(s) | 171 |
| BstYI | RGATCY | 1 cut(s) | 171 |
| BsuRI | GGCC | 2 cut(s) | 75, 386 |
| BtsCI | GGATG | 2 cut(s) | 201, 579 |
| BtsIMutI | CAGTG | 1 cut(s) | 475 |
| Cac8I | GCNNGC | 2 cut(s) | 304, 412 |
| Cfr13I | GGNCC | 2 cut(s) | 74, 688 |
| Csp6I | GTAC | 1 cut(s) | 501 |
| CviAII | CATG | 4 cut(s) | 273, 447, 483, 509 |
| CviQI | GTAC | 1 cut(s) | 501 |
| DdeI | CTNAG | 4 cut(s) | 298, 381, 554, 588 |
| DpnI | GATC | 3 cut(s) | 173, 593, 624 |
| DpnII | GATC | 3 cut(s) | 171, 591, 622 |
| Eam1104I | CTCTTC | 1 cut(s) | 399 |
| EarI | CTCTTC | 1 cut(s) | 399 |
| Eco130I | CCWWGG | 1 cut(s) | 41 |
| Eco47I | GGWCC | 1 cut(s) | 688 |
| EcoO109I | RGGNCCY | 1 cut(s) | 688 |
| EcoRII | CCWGG | 2 cut(s) | 152, 251 |
| EcoT14I | CCWWGG | 1 cut(s) | 41 |
| EcoT22I | ATGCAT | 1 cut(s) | 201 |
| ErhI | CCWWGG | 1 cut(s) | 41 |
| FaeI | CATG | 4 cut(s) | 276, 450, 486, 512 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 286, 318 |
| FatI | CATG | 4 cut(s) | 272, 446, 482, 508 |
| Fnu4HI | GCNGC | 1 cut(s) | 73 |
| FokI | GGATG | 2 cut(s) | 208, 566 |
| Fsp4HI | GCNGC | 1 cut(s) | 73 |
| FspBI | CTAG | 5 cut(s) | 263, 326, 369, 477, 524 |
| GluI | GCNGC | 1 cut(s) | 73 |
| GsaI | CCCAGC | 1 cut(s) | 248 |
| HaeIII | GGCC | 2 cut(s) | 75, 386 |
| HapII | CCGG | 1 cut(s) | 102 |
| Hin1II | CATG | 4 cut(s) | 276, 450, 486, 512 |
| HincII | GTYRAC | 1 cut(s) | 550 |
| HindII | GTYRAC | 1 cut(s) | 550 |
| HinfI | GANTC | 1 cut(s) | 140 |
| HpaII | CCGG | 1 cut(s) | 102 |
| HphI | GGTGA | 1 cut(s) | 327 |
| Hpy166II | GTNNAC | 1 cut(s) | 550 |
| Hpy188I | TCNGA | 2 cut(s) | 133, 591 |
| Hpy188III | TCNNGA | 5 cut(s) | 52, 236, 539, 620, 731 |
| Hpy8I | GTNNAC | 1 cut(s) | 550 |
| Hpy99I | CGWCG | 2 cut(s) | 68, 137 |
| HpyCH4IV | ACGT | 1 cut(s) | 348 |
| HpyCH4V | TGCA | 4 cut(s) | 199, 272, 486, 694 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 303, 365 |
| HpyF3I | CTNAG | 4 cut(s) | 298, 381, 554, 588 |
| HpySE526I | ACGT | 1 cut(s) | 348 |
| Hsp92II | CATG | 4 cut(s) | 276, 450, 486, 512 |
| Kzo9I | GATC | 3 cut(s) | 171, 591, 622 |
| LguI | GCTCTTC | 1 cut(s) | 399 |
| LweI | GCATC | 3 cut(s) | 186, 208, 703 |
| MaeI | CTAG | 5 cut(s) | 263, 326, 369, 477, 524 |
| MaeII | ACGT | 1 cut(s) | 348 |
| MalI | GATC | 3 cut(s) | 173, 593, 624 |
| MboI | GATC | 3 cut(s) | 171, 591, 622 |
| MboII | GAAGA | 4 cut(s) | 67, 354, 386, 662 |
| MflI | RGATCY | 1 cut(s) | 171 |
| MhlI | GDGCHC | 2 cut(s) | 251, 280 |
| MluCI | AATT | 3 cut(s) | 203, 663, 723 |
| MmeI | TCCRAC | 1 cut(s) | 156 |
| Mph1103I | ATGCAT | 1 cut(s) | 201 |
| MseI | TTAA | 2 cut(s) | 60, 713 |
| MspA1I | CMGCKG | 1 cut(s) | 244 |
| MspI | CCGG | 1 cut(s) | 102 |
| MspR9I | CCNGG | 2 cut(s) | 154, 253 |
| MvaI | CCWGG | 2 cut(s) | 154, 253 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 303, 365 |
| NdeII | GATC | 3 cut(s) | 171, 591, 622 |
| NlaIII | CATG | 4 cut(s) | 276, 450, 486, 512 |
| NlaIV | GGNNCC | 2 cut(s) | 250, 279 |
| NmeAIII | GCCGAG | 1 cut(s) | 412 |
| NsiI | ATGCAT | 1 cut(s) | 201 |
| PciSI | GCTCTTC | 1 cut(s) | 399 |
| PfeI | GAWTC | 1 cut(s) | 140 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 665 |
| PkrI | GCNGC | 1 cut(s) | 74 |
| PpuMI | RGGWCCY | 1 cut(s) | 688 |
| Psp1406I | AACGTT | 1 cut(s) | 348 |
| Psp5II | RGGWCCY | 1 cut(s) | 688 |
| Psp6I | CCWGG | 2 cut(s) | 152, 251 |
| PspFI | CCCAGC | 1 cut(s) | 244 |
| PspGI | CCWGG | 2 cut(s) | 152, 251 |
| PspN4I | GGNNCC | 2 cut(s) | 250, 279 |
| PspPI | GGNCC | 2 cut(s) | 74, 688 |
| PspPPI | RGGWCCY | 1 cut(s) | 688 |
| PsuI | RGATCY | 1 cut(s) | 171 |
| RsaI | GTAC | 1 cut(s) | 502 |
| RsaNI | GTAC | 1 cut(s) | 501 |
| SapI | GCTCTTC | 1 cut(s) | 399 |
| SaqAI | TTAA | 2 cut(s) | 60, 713 |
| SatI | GCNGC | 1 cut(s) | 73 |
| Sau3AI | GATC | 3 cut(s) | 171, 591, 622 |
| Sau96I | GGNCC | 2 cut(s) | 74, 688 |
| ScrFI | CCNGG | 2 cut(s) | 154, 253 |
| SduI | GDGCHC | 2 cut(s) | 251, 280 |
| SfaNI | GCATC | 3 cut(s) | 186, 208, 703 |
| SfcI | CTRYAG | 2 cut(s) | 34, 222 |
| SinI | GGWCC | 1 cut(s) | 688 |
| SmlI | CTYRAG | 2 cut(s) | 683, 729 |
| SmoI | CTYRAG | 2 cut(s) | 683, 729 |
| SpeI | ACTAGT | 1 cut(s) | 262 |
| Sse9I | AATT | 3 cut(s) | 203, 663, 723 |
| SsiI | CCGC | 2 cut(s) | 72, 242 |
| SspMI | CTAG | 5 cut(s) | 263, 326, 369, 477, 524 |
| StyD4I | CCNGG | 2 cut(s) | 152, 251 |
| StyI | CCWWGG | 1 cut(s) | 41 |
| TaiI | ACGT | 1 cut(s) | 351 |
| TaqII | GACCGA | 1 cut(s) | 83 |
| TasI | AATT | 3 cut(s) | 203, 663, 723 |
| TauI | GCSGC | 1 cut(s) | 75 |
| TfiI | GAWTC | 1 cut(s) | 140 |
| Tru1I | TTAA | 2 cut(s) | 60, 713 |
| Tru9I | TTAA | 2 cut(s) | 60, 713 |
| TscAI | CASTG | 1 cut(s) | 475 |
| TspDTI | ATGAA | 3 cut(s) | 17, 321, 507 |
| TspRI | CASTG | 1 cut(s) | 475 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 665 |
| VpaK11BI | GGWCC | 1 cut(s) | 688 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 489 |
| XspI | CTAG | 5 cut(s) | 263, 326, 369, 477, 524 |
| Zsp2I | ATGCAT | 1 cut(s) | 201 |