Rh2AG407000

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000147
Physical Location & Seq
Reverse (-)
60592683 .. 60598248
5566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG407000.1

Sequence Viewer

Length: 837 bp
ATGGGAGGCTATGGATATGGGAGAAGTAAAGGTGGAAGAAGCAGTGGATGGGCCGGCAGGTCTAGAAACAGAGGCCGGGGTAAATGTCGTGGAAGAGCAGGTAGAACTGTAGAGCCAATTCGTGGTGCTGGTGGTTTAGCTCTATGGTGGAAGCCTGATGTTAATGTTGAGTTTGTTTTCACTTCCAAATATATTCTGGATACTATTATTACGGTTAAAAAAGATGGGACTATCTTCAGAGCTACCTGGTTCTATGGGCCTCCTTACAAGGCAGATAAGAAGGACTTTTGGGAATCAGTCAGGTGTCTTGCAAACAAAGACAATTATCCGTGGATTTGTGTTGGTGATTTTAATGAAATACTGAACAGTAGTGAAAAAGAAGGGGGTAACACTCTCAATTGGAATCGGCCTCAGTTTCTTAGAAGCTTCATGGACAGTAATGCTCTCTTTGACATTGGGTTTTGTGGTCAAAAATTCACGTGGGAAAATAGAAGAGACTCAGATGATTTGATCAAAGAGCGTTTGGATCGAGCTTTGGTCAACTGTCATTGGCTCACTACTTGGCCGAATACGGTAGTGCAGCATGAATCCCGAATTGGAAGTGATCATTGCCCATTAATTATAAAACCTCTTTCCCCTCCTAAAAGACACACCGGGAATTTTAAGTTTGAGGCTTTCTGGGCTGAGGATCCTGATTGTGAAGAAGTTGTTAAACAAGAATGGAAGCTATGCAGGGGCACCAATCCATTCTCTATCTGGAACAACAACTTACCTAGAGTACTCTCTCCGGTGAGAAGAGCACCGTCAACACGTGTGTATAGGTTCGTTTGCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

278

Amino Acids

32.05

Weight (kDa)

9.51

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 38 - 203 3.5e-07 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 623
Acc36I ACCTGC 2 cut(s) 48, 89
AccB1I GGYRCC 1 cut(s) 737
AccB7I CCANNNNNTGG 1 cut(s) 122
AclWI GGATC 3 cut(s) 534, 683, 696
AcoI YGGCCR 1 cut(s) 563
AcsI RAATTY 2 cut(s) 473, 658
AcuI CTGAAG 1 cut(s) 220
AcvI CACGTG 2 cut(s) 480, 812
AfaI GTAC 1 cut(s) 780
AfiI CCNNNNNNNGG 1 cut(s) 122
AflIII ACRYGT 2 cut(s) 809, 811
AjnI CCWGG 1 cut(s) 245
AjuI GAANNNNNNNTTGG 2 cut(s) 579, 611
AluBI AGCT 5 cut(s) 140, 242, 426, 533, 727
AluI AGCT 5 cut(s) 140, 242, 426, 533, 727
Alw21I GWGCWC 1 cut(s) 802
Alw26I GTCTC 1 cut(s) 489
AlwI GGATC 3 cut(s) 534, 683, 696
AoxI GGCC 5 cut(s) 51, 73, 257, 407, 563
ApeKI GCWGC 1 cut(s) 580
ApoI RAATTY 2 cut(s) 473, 658
AseI ATTAAT 1 cut(s) 617
AspS9I GGNCC 2 cut(s) 51, 257
AsuC2I CCSGG 2 cut(s) 77, 655
AsuHPI GGTGA 2 cut(s) 356, 802
BaeGI GKGCMC 1 cut(s) 740
BamHI GGATCC 1 cut(s) 688
BanI GGYRCC 1 cut(s) 737
BbrPI CACGTG 2 cut(s) 480, 812
Bbv12I GWGCWC 1 cut(s) 802
BbvCI CCTCAGC 1 cut(s) 684
BbvI GCAGC 1 cut(s) 592
BccI CCATC 2 cut(s) 42, 218
BciT130I CCWGG 1 cut(s) 247
BciVI GTATCC 1 cut(s) 193
BclI TGATCA 2 cut(s) 510, 604
BcnI CCSGG 2 cut(s) 77, 655
BcoDI GTCTC 1 cut(s) 489
BfaI CTAG 2 cut(s) 63, 774
BfmI CTRYAG 1 cut(s) 108
BfuAI ACCTGC 2 cut(s) 48, 89
BfuI GTATCC 1 cut(s) 193
BisI GCNGC 1 cut(s) 581
BlsI GCNGC 1 cut(s) 582
BmcAI AGTACT 1 cut(s) 780
Bme1390I CCNGG 3 cut(s) 77, 247, 655
BmgT120I GGNCC 2 cut(s) 51, 257
BmiI GGNNCC 2 cut(s) 690, 739
BmrFI CCNGG 3 cut(s) 77, 247, 655
Bpu10I CCTNAGC 1 cut(s) 684
BpuMI CCSGG 2 cut(s) 77, 655
BsaAI YACGTR 2 cut(s) 480, 812
BsaJI CCNNGG 2 cut(s) 76, 329
BsaWI WCCGGW 1 cut(s) 787
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse118I RCCGGY 1 cut(s) 53
Bse3DI GCAATG 1 cut(s) 607
BseBI CCWGG 1 cut(s) 247
BseDI CCNNGG 2 cut(s) 76, 329
BseGI GGATG 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMI GCAATG 1 cut(s) 607
BseMII CTCAG 3 cut(s) 425, 513, 675
BseSI GKGCMC 1 cut(s) 740
BseXI GCAGC 1 cut(s) 592
BsgI GTGCAG 1 cut(s) 599
BshFI GGCC 5 cut(s) 53, 75, 259, 409, 565
BshNI GGYRCC 1 cut(s) 737
BsiHKAI GWGCWC 1 cut(s) 802
BsiSI CCGG 4 cut(s) 54, 76, 654, 788
BslFI GGGAC 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 489
BsmFI GGGAC 1 cut(s) 241
BsnI GGCC 5 cut(s) 53, 75, 259, 409, 565
Bsp1286I GDGCHC 2 cut(s) 740, 802
Bsp143I GATC 4 cut(s) 510, 526, 604, 688
BspANI GGCC 5 cut(s) 53, 75, 259, 409, 565
BspCNI CTCAG 3 cut(s) 424, 512, 676
BspLI GGNNCC 2 cut(s) 690, 739
BspMI ACCTGC 2 cut(s) 48, 89
BspPI GGATC 3 cut(s) 534, 683, 696
BspQI GCTCTTC 2 cut(s) 88, 790
BspT107I GGYRCC 1 cut(s) 737
BsrDI GCAATG 1 cut(s) 607
BsrFI RCCGGY 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 2 cut(s) 76, 329
BssMI GATC 4 cut(s) 510, 526, 604, 688
Bst2UI CCWGG 1 cut(s) 247
Bst4CI ACNGT 7 cut(s) 109, 214, 368, 437, 545, 574, 804
Bst6I CTCTTC 3 cut(s) 88, 487, 790
BstBAI YACGTR 2 cut(s) 480, 812
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 4 cut(s) 411, 419, 499, 684
BstDSI CCRYGG 1 cut(s) 329
BstF5I GGATG 1 cut(s) 53
BstKTI GATC 4 cut(s) 513, 529, 607, 691
BstMAI GTCTC 1 cut(s) 489
BstMBI GATC 4 cut(s) 510, 526, 604, 688
BstMWI GCNNNNNNNGC 1 cut(s) 680
BstNI CCWGG 1 cut(s) 247
BstSCI CCNGG 3 cut(s) 75, 245, 653
BstSFI CTRYAG 1 cut(s) 108
BstSLI GKGCMC 1 cut(s) 740
BstV1I GCAGC 1 cut(s) 592
BstX2I RGATCY 1 cut(s) 688
BstYI RGATCY 1 cut(s) 688
BsuI GTATCC 1 cut(s) 193
BsuRI GGCC 5 cut(s) 53, 75, 259, 409, 565
BtgI CCRYGG 1 cut(s) 329
BtsCI GGATG 1 cut(s) 53
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 49
BveI ACCTGC 2 cut(s) 48, 89
Cac8I GCNNGC 1 cut(s) 55
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 2 cut(s) 51, 257
CsiI ACCWGGT 1 cut(s) 245
Csp6I GTAC 1 cut(s) 779
CviAII CATG 2 cut(s) 430, 584
CviQI GTAC 1 cut(s) 779
DdeI CTNAG 4 cut(s) 411, 419, 499, 684
DpnI GATC 4 cut(s) 512, 528, 606, 690
DpnII GATC 4 cut(s) 510, 526, 604, 688
EaeI YGGCCR 1 cut(s) 563
Eam1104I CTCTTC 3 cut(s) 88, 487, 790
EarI CTCTTC 3 cut(s) 88, 487, 790
Eco57I CTGAAG 1 cut(s) 220
Eco72I CACGTG 2 cut(s) 480, 812
EcoRII CCWGG 1 cut(s) 245
FaeI CATG 2 cut(s) 433, 587
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FaqI GGGAC 1 cut(s) 241
FatI CATG 2 cut(s) 429, 583
FbaI TGATCA 2 cut(s) 510, 604
Fnu4HI GCNGC 1 cut(s) 581
FokI GGATG 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 581
FspBI CTAG 2 cut(s) 63, 774
GluI GCNGC 1 cut(s) 581
HaeIII GGCC 5 cut(s) 53, 75, 259, 409, 565
HapII CCGG 4 cut(s) 54, 76, 654, 788
Hin1II CATG 2 cut(s) 433, 587
HincII GTYRAC 2 cut(s) 541, 807
HindII GTYRAC 2 cut(s) 541, 807
HindIII AAGCTT 1 cut(s) 424
HinfI GANTC 4 cut(s) 293, 403, 497, 587
HpaII CCGG 4 cut(s) 54, 76, 654, 788
HphI GGTGA 2 cut(s) 356, 802
Hpy166II GTNNAC 2 cut(s) 541, 807
Hpy188I TCNGA 2 cut(s) 239, 502
Hpy188III TCNNGA 5 cut(s) 63, 197, 591, 692, 757
Hpy8I GTNNAC 2 cut(s) 541, 807
HpyAV CCTTC 2 cut(s) 274, 374
HpyCH4III ACNGT 7 cut(s) 109, 214, 368, 437, 545, 574, 804
HpyCH4IV ACGT 2 cut(s) 479, 811
HpyCH4V TGCA 4 cut(s) 311, 580, 732, 831
HpyF10VI GCNNNNNNNGC 1 cut(s) 680
HpyF3I CTNAG 4 cut(s) 411, 419, 499, 684
HpySE526I ACGT 2 cut(s) 479, 811
Hsp92II CATG 2 cut(s) 433, 587
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
Ksp22I TGATCA 2 cut(s) 510, 604
Kzo9I GATC 4 cut(s) 510, 526, 604, 688
LguI GCTCTTC 2 cut(s) 88, 790
Lsp1109I GCAGC 1 cut(s) 592
MabI ACCWGGT 1 cut(s) 245
MaeI CTAG 2 cut(s) 63, 774
MaeII ACGT 2 cut(s) 479, 811
MaeIII GTNAC 1 cut(s) 386
MalI GATC 4 cut(s) 512, 528, 606, 690
MboI GATC 4 cut(s) 510, 526, 604, 688
MboII GAAGA 6 cut(s) 48, 105, 226, 504, 713, 807
MfeI CAATTG 1 cut(s) 397
MflI RGATCY 1 cut(s) 688
MhlI GDGCHC 2 cut(s) 740, 802
MluCI AATT 7 cut(s) 117, 322, 397, 473, 594, 618, 658
MlyI GAGTC 1 cut(s) 491
MnlI CCTC 7 cut(s) 65, 270, 420, 639, 648, 664, 679
MroNI GCCGGC 1 cut(s) 53
MseI TTAA 6 cut(s) 162, 216, 351, 617, 663, 711
MspI CCGG 4 cut(s) 54, 76, 654, 788
MspR9I CCNGG 3 cut(s) 77, 247, 655
MunI CAATTG 1 cut(s) 397
MvaI CCWGG 1 cut(s) 247
MwoI GCNNNNNNNGC 1 cut(s) 680
NaeI GCCGGC 1 cut(s) 55
NciI CCSGG 2 cut(s) 77, 655
NdeII GATC 4 cut(s) 510, 526, 604, 688
NgoMIV GCCGGC 1 cut(s) 53
NlaIII CATG 2 cut(s) 433, 587
NlaIV GGNNCC 2 cut(s) 690, 739
PciSI GCTCTTC 2 cut(s) 88, 790
PdiI GCCGGC 1 cut(s) 55
PfeI GAWTC 3 cut(s) 293, 403, 587
PflMI CCANNNNNTGG 1 cut(s) 122
PkrI GCNGC 1 cut(s) 582
PleI GAGTC 1 cut(s) 491
PmaCI CACGTG 2 cut(s) 480, 812
PmlI CACGTG 2 cut(s) 480, 812
PpsI GAGTC 1 cut(s) 491
Ppu21I YACGTR 2 cut(s) 480, 812
PshBI ATTAAT 1 cut(s) 617
PsiI TTATAA 1 cut(s) 623
Psp6I CCWGG 1 cut(s) 245
PspCI CACGTG 2 cut(s) 480, 812
PspGI CCWGG 1 cut(s) 245
PspN4I GGNNCC 2 cut(s) 690, 739
PspPI GGNCC 2 cut(s) 51, 257
PsuI RGATCY 1 cut(s) 688
RsaI GTAC 1 cut(s) 780
RsaNI GTAC 1 cut(s) 779
SapI GCTCTTC 2 cut(s) 88, 790
SaqAI TTAA 6 cut(s) 162, 216, 351, 617, 663, 711
SatI GCNGC 1 cut(s) 581
Sau3AI GATC 4 cut(s) 510, 526, 604, 688
Sau96I GGNCC 2 cut(s) 51, 257
ScaI AGTACT 1 cut(s) 780
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 3 cut(s) 77, 247, 655
SduI GDGCHC 2 cut(s) 740, 802
SexAI ACCWGGT 1 cut(s) 245
SfcI CTRYAG 1 cut(s) 108
Sse9I AATT 7 cut(s) 117, 322, 397, 473, 594, 618, 658
SspMI CTAG 2 cut(s) 63, 774
StyD4I CCNGG 3 cut(s) 75, 245, 653
TaaI ACNGT 7 cut(s) 109, 214, 368, 437, 545, 574, 804
TaiI ACGT 2 cut(s) 482, 814
TaqI TCGA 1 cut(s) 529
TasI AATT 7 cut(s) 117, 322, 397, 473, 594, 618, 658
TatI WGTACW 1 cut(s) 778
TfiI GAWTC 3 cut(s) 293, 403, 587
Tru1I TTAA 6 cut(s) 162, 216, 351, 617, 663, 711
Tru9I TTAA 6 cut(s) 162, 216, 351, 617, 663, 711
TscAI CASTG 1 cut(s) 49
TseI GCWGC 1 cut(s) 580
TspDTI ATGAA 3 cut(s) 369, 418, 600
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 1 cut(s) 49
Van91I CCANNNNNTGG 1 cut(s) 122
VspI ATTAAT 1 cut(s) 617
XapI RAATTY 2 cut(s) 473, 658
XbaI TCTAGA 1 cut(s) 62
XcmI CCANNNNNNNNNTGG 2 cut(s) 193, 753
XspI CTAG 2 cut(s) 63, 774
ZrmI AGTACT 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.