Rmu_sc0008957.1_g000007

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008957.1
OG0000147
Physical Location & Seq
Forward (+)
17580 .. 18711
1132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008957.1_g000007.1.cds

Sequence Viewer

Length: 594 bp
atgttcgaaagacttgatagagcctatgtcaatagtaactttctgaatgattatccaaatctaaagctggaaaatcttccaattattggtttagatcatggtccaatttgtctcacgttacatagtgagcacaggaaaaggcccaaatcttgcaaatttgaggcaatgtggctcccacacaaggattttaaaccttttgtgagcaccatttggaaacaaactgctgatactaatcctatttttaattttctcactattaaccgttcgacccgacccggaaatatctccggtctccggcgtcctccggccccggacccgtcacctcccgaagtcaccgctccacgtccagcctccctcctgtgtcgccttgccccacgccgcccccagagctggatcgaagaagccccagccatgcgaaacccgacccagccggaaaacctcaacgccggcgtttcacaggccgatccttcccattttcgtgatctcctcctccccctgatcatcctcgtatcctccttgcacggcgattttgagtgtggagtgaaagatcacgagttgaagatttcgacgtccctgattcgatctggaatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

197

Amino Acids

22.26

Weight (kDa)

9.0

Isoelectric Point (pI)

56.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 572
AccB7I CCANNNNNTGG 1 cut(s) 86
AccBSI CCGCTC 1 cut(s) 338
AciI CCGC 2 cut(s) 336, 379
AclWI GGATC 2 cut(s) 401, 458
AcsI RAATTY 1 cut(s) 155
AcyI GRCGYC 2 cut(s) 298, 569
AfiI CCNNNNNNNGG 4 cut(s) 86, 181, 294, 390
AgsI TTSAA 1 cut(s) 559
AjiI CACGTC 1 cut(s) 344
AluBI AGCT 2 cut(s) 67, 390
AluI AGCT 2 cut(s) 67, 390
Alw21I GWGCWC 2 cut(s) 132, 206
Alw26I GTCTC 2 cut(s) 116, 296
AlwI GGATC 2 cut(s) 401, 458
AoxI GGCC 3 cut(s) 140, 306, 459
ApoI RAATTY 1 cut(s) 155
Asp700I GAANNNNTTC 1 cut(s) 75
AspS9I GGNCC 4 cut(s) 101, 141, 307, 313
AsuC2I CCSGG 2 cut(s) 276, 311
AsuHPI GGTGA 2 cut(s) 312, 325
AsuII TTCGAA 1 cut(s) 6
AvaII GGWCC 2 cut(s) 101, 313
BauI CACGAG 1 cut(s) 551
Bbv12I GWGCWC 2 cut(s) 132, 206
BceAI ACGGC 1 cut(s) 538
BciVI GTATCC 1 cut(s) 520
BclI TGATCA 1 cut(s) 498
BcnI CCSGG 2 cut(s) 276, 311
BcoDI GTCTC 2 cut(s) 116, 296
BfuI GTATCC 1 cut(s) 520
BisI GCNGC 1 cut(s) 379
BlsI GCNGC 1 cut(s) 380
Bme1390I CCNGG 2 cut(s) 276, 311
Bme18I GGWCC 2 cut(s) 101, 313
BmgBI CACGTC 1 cut(s) 344
BmgT120I GGNCC 4 cut(s) 101, 141, 307, 313
BmiI GGNNCC 3 cut(s) 173, 309, 315
BmrFI CCNGG 2 cut(s) 276, 311
Bpu14I TTCGAA 1 cut(s) 6
BpuMI CCSGG 2 cut(s) 276, 311
BsaBI GATNNNNATC 1 cut(s) 231
BsaHI GRCGYC 2 cut(s) 298, 569
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 309
BsaWI WCCGGW 1 cut(s) 287
Bsc4I CCNNNNNNNGG 4 cut(s) 86, 181, 294, 390
Bse118I RCCGGY 1 cut(s) 446
Bse3DI GCAATG 1 cut(s) 171
Bse8I GATNNNNATC 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 309
BseGI GGATG 1 cut(s) 501
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 4 cut(s) 86, 181, 294, 390
BseMI GCAATG 1 cut(s) 171
BseRI GAGGAG 2 cut(s) 476, 479
BseYI CCCAGC 2 cut(s) 406, 426
BshFI GGCC 3 cut(s) 142, 308, 461
BsiHKAI GWGCWC 2 cut(s) 132, 206
BsiSI CCGG 7 cut(s) 276, 288, 295, 305, 311, 431, 447
BslFI GGGAC 1 cut(s) 556
BslI CCNNNNNNNGG 4 cut(s) 86, 181, 294, 390
BsmAI GTCTC 2 cut(s) 116, 296
BsmFI GGGAC 1 cut(s) 556
BsnI GGCC 3 cut(s) 142, 308, 461
Bso31I GGTCTC 1 cut(s) 296
Bsp119I TTCGAA 1 cut(s) 6
Bsp1286I GDGCHC 2 cut(s) 132, 206
Bsp143I GATC 7 cut(s) 94, 393, 463, 481, 498, 547, 581
BspACI CCGC 2 cut(s) 336, 379
BspANI GGCC 3 cut(s) 142, 308, 461
BspLI GGNNCC 3 cut(s) 173, 309, 315
BspPI GGATC 2 cut(s) 401, 458
BspT104I TTCGAA 1 cut(s) 6
BspTNI GGTCTC 1 cut(s) 296
BsrBI CCGCTC 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 171
BsrFI RCCGGY 1 cut(s) 446
BssAI RCCGGY 1 cut(s) 446
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 7 cut(s) 94, 393, 463, 481, 498, 547, 581
BssNI GRCGYC 2 cut(s) 298, 569
BssSI CACGAG 1 cut(s) 551
Bst2BI CACGAG 1 cut(s) 551
Bst4CI ACNGT 1 cut(s) 263
BstACI GRCGYC 2 cut(s) 298, 569
BstBI TTCGAA 1 cut(s) 6
BstC8I GCNNGC 1 cut(s) 448
BstF5I GGATG 1 cut(s) 501
BstKTI GATC 7 cut(s) 97, 396, 466, 484, 501, 550, 584
BstMAI GTCTC 2 cut(s) 116, 296
BstMBI GATC 7 cut(s) 94, 393, 463, 481, 498, 547, 581
BstMWI GCNNNNNNNGC 1 cut(s) 387
BstSCI CCNGG 2 cut(s) 274, 309
BsuI GTATCC 1 cut(s) 520
BsuRI GGCC 3 cut(s) 142, 308, 461
BtrI CACGTC 1 cut(s) 344
BtsCI GGATG 1 cut(s) 501
Cac8I GCNNGC 1 cut(s) 448
Cfr10I RCCGGY 1 cut(s) 446
Cfr13I GGNCC 4 cut(s) 101, 141, 307, 313
CseI GACGC 1 cut(s) 287
CviAII CATG 2 cut(s) 98, 412
DpnI GATC 7 cut(s) 96, 395, 465, 483, 500, 549, 583
DpnII GATC 7 cut(s) 94, 393, 463, 481, 498, 547, 581
DraI TTTAAA 1 cut(s) 190
Eco31I GGTCTC 1 cut(s) 296
Eco47I GGWCC 2 cut(s) 101, 313
FaeI CATG 2 cut(s) 101, 415
FaiI YATR 4 cut(s) 27, 99, 123, 413
FaqI GGGAC 1 cut(s) 556
FatI CATG 2 cut(s) 97, 411
FbaI TGATCA 1 cut(s) 498
Fnu4HI GCNGC 1 cut(s) 379
FokI GGATG 1 cut(s) 488
Fsp4HI GCNGC 1 cut(s) 379
GluI GCNGC 1 cut(s) 379
GsaI CCCAGC 2 cut(s) 410, 430
HaeIII GGCC 3 cut(s) 142, 308, 461
HapII CCGG 7 cut(s) 276, 288, 295, 305, 311, 431, 447
HgaI GACGC 1 cut(s) 287
Hin1I GRCGYC 2 cut(s) 298, 569
Hin1II CATG 2 cut(s) 101, 415
HinfI GANTC 2 cut(s) 577, 588
HpaII CCGG 7 cut(s) 276, 288, 295, 305, 311, 431, 447
HphI GGTGA 2 cut(s) 312, 325
Hpy188I TCNGA 2 cut(s) 45, 593
Hpy188III TCNNGA 4 cut(s) 326, 479, 551, 585
Hpy99I CGWCG 1 cut(s) 571
HpyAV CCTTC 1 cut(s) 477
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4IV ACGT 3 cut(s) 116, 343, 569
HpyCH4V TGCA 2 cut(s) 153, 520
HpyF10VI GCNNNNNNNGC 1 cut(s) 387
HpySE526I ACGT 3 cut(s) 116, 343, 569
Hsp92I GRCGYC 2 cut(s) 298, 569
Hsp92II CATG 2 cut(s) 101, 415
KroI GCCGGC 1 cut(s) 446
KroNI GCCGGC 1 cut(s) 448
Ksp22I TGATCA 1 cut(s) 498
Kzo9I GATC 7 cut(s) 94, 393, 463, 481, 498, 547, 581
LmnI GCTCC 2 cut(s) 177, 343
MaeII ACGT 3 cut(s) 116, 343, 569
MaeIII GTNAC 4 cut(s) 35, 117, 318, 331
MalI GATC 7 cut(s) 96, 395, 465, 483, 500, 549, 583
MbiI CCGCTC 1 cut(s) 338
MboI GATC 7 cut(s) 94, 393, 463, 481, 498, 547, 581
MboII GAAGA 3 cut(s) 68, 410, 571
MhlI GDGCHC 2 cut(s) 132, 206
MluCI AATT 4 cut(s) 81, 105, 155, 244
MreI CGCCGGCG 1 cut(s) 446
MroNI GCCGGC 1 cut(s) 446
MroXI GAANNNNTTC 1 cut(s) 75
MseI TTAA 3 cut(s) 189, 243, 258
MslI CAYNNNNRTG 1 cut(s) 477
MspI CCGG 7 cut(s) 276, 288, 295, 305, 311, 431, 447
MspR9I CCNGG 2 cut(s) 276, 311
MwoI GCNNNNNNNGC 1 cut(s) 387
NaeI GCCGGC 1 cut(s) 448
NciI CCSGG 2 cut(s) 276, 311
NdeII GATC 7 cut(s) 94, 393, 463, 481, 498, 547, 581
NgoMIV GCCGGC 1 cut(s) 446
NlaIII CATG 2 cut(s) 101, 415
NlaIV GGNNCC 3 cut(s) 173, 309, 315
NmuCI GTSAC 2 cut(s) 318, 331
NspV TTCGAA 1 cut(s) 6
PdiI GCCGGC 1 cut(s) 448
PdmI GAANNNNTTC 1 cut(s) 75
PfeI GAWTC 2 cut(s) 577, 588
PflMI CCANNNNNTGG 1 cut(s) 86
PkrI GCNGC 1 cut(s) 380
PspFI CCCAGC 2 cut(s) 406, 426
PspN4I GGNNCC 3 cut(s) 173, 309, 315
PspPI GGNCC 4 cut(s) 101, 141, 307, 313
RseI CAYNNNNRTG 1 cut(s) 477
SaqAI TTAA 3 cut(s) 189, 243, 258
SatI GCNGC 1 cut(s) 379
Sau3AI GATC 7 cut(s) 94, 393, 463, 481, 498, 547, 581
Sau96I GGNCC 4 cut(s) 101, 141, 307, 313
ScrFI CCNGG 2 cut(s) 276, 311
SduI GDGCHC 2 cut(s) 132, 206
SetI ASST 8 cut(s) 69, 119, 196, 325, 346, 392, 441, 572
SfuI TTCGAA 1 cut(s) 6
SgrAI CRCCGGYG 1 cut(s) 446
SinI GGWCC 2 cut(s) 101, 313
SmiMI CAYNNNNRTG 1 cut(s) 477
Sse9I AATT 4 cut(s) 81, 105, 155, 244
SsiI CCGC 2 cut(s) 336, 379
StyD4I CCNGG 2 cut(s) 274, 309
TaaI ACNGT 1 cut(s) 263
TaiI ACGT 3 cut(s) 119, 346, 572
TaqI TCGA 5 cut(s) 6, 266, 396, 566, 580
TasI AATT 4 cut(s) 81, 105, 155, 244
TauI GCSGC 1 cut(s) 381
TfiI GAWTC 2 cut(s) 577, 588
Tru1I TTAA 3 cut(s) 189, 243, 258
Tru9I TTAA 3 cut(s) 189, 243, 258
TseFI GTSAC 2 cut(s) 318, 331
Tsp45I GTSAC 2 cut(s) 318, 331
Van91I CCANNNNNTGG 1 cut(s) 86
VpaK11BI GGWCC 2 cut(s) 101, 313
XapI RAATTY 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 75
ZraI GACGTC 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.