Rmu_sc0004080.1_g000011

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004080.1
OG0000147
Physical Location & Seq
Reverse (-)
44670 .. 45719
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004080.1_g000011.1.cds

Sequence Viewer

Length: 663 bp
atgacctccctaagggctgaaggaatacctttcactaggaccaacaaacacaaagatcacactgtgatttatgaacgtttggatagagcggttgctaaccctagtcggcttcaactttatcctcattgcactccagagaacctgccaattcttggttctgatcacggccctattttattgactactttaccttctagatctcctagaactaaaccttttaagtttgaagctatttggctttcccatcctgatttcgttaacttagttaagcaaatttggtctcagaaccttgatcctgtgatgccccggaaattcgcagattccggcgttctccggccaagtgaccaccacatatcgtttcgccaccatcttgtcgtcctacctctggtgcttgacggcgacggaaaccaccgaaaagtggagatcggagtagctacagttgatgcaatcgggacccggtcggaagttcacctttcaggcgacatctcggctgatccttcttggttttggaatctcctcctcctcctgatcatcctcatacctaccttgaaggacgattttgcgtgtggagtgaaagatcaaggtttgaaaatctgtggtgcacaacgaatctggggcttgatcagacggctgggattgaccgatcttgcaagcttgatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

220

Amino Acids

24.69

Weight (kDa)

8.84

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 150
AccB7I CCANNNNNTGG 1 cut(s) 152
AccBSI CCGCTC 1 cut(s) 89
AciI CCGC 1 cut(s) 89
AclI AACGTT 1 cut(s) 76
AclWI GGATC 2 cut(s) 287, 488
AcoI YGGCCR 1 cut(s) 335
AcsI RAATTY 2 cut(s) 273, 311
AcuI CTGAAG 1 cut(s) 39
AdeI CACNNNGTG 1 cut(s) 64
AfiI CCNNNNNNNGG 4 cut(s) 12, 152, 385, 418
AgsI TTSAA 4 cut(s) 113, 227, 550, 589
AjuI GAANNNNNNNTTGG 2 cut(s) 139, 171
AluBI AGCT 3 cut(s) 230, 434, 654
AluI AGCT 3 cut(s) 230, 434, 654
Alw21I GWGCWC 1 cut(s) 604
Alw26I GTCTC 1 cut(s) 285
Alw44I GTGCAC 1 cut(s) 600
AlwI GGATC 2 cut(s) 287, 488
AoxI GGCC 2 cut(s) 166, 335
ApaLI GTGCAC 1 cut(s) 600
ApoI RAATTY 2 cut(s) 273, 311
AspS9I GGNCC 3 cut(s) 39, 167, 453
AsuC2I CCSGG 2 cut(s) 307, 457
AsuHPI GGTGA 1 cut(s) 461
AvaII GGWCC 2 cut(s) 39, 453
AxyI CCTNAGG 1 cut(s) 11
BaeGI GKGCMC 1 cut(s) 604
Bbv12I GWGCWC 1 cut(s) 604
BccI CCATC 2 cut(s) 252, 375
BceAI ACGGC 3 cut(s) 181, 412, 644
BclI TGATCA 3 cut(s) 160, 528, 621
BcnI CCSGG 2 cut(s) 307, 457
BcoDI GTCTC 1 cut(s) 285
BfaI CTAG 5 cut(s) 36, 102, 195, 204, 661
BfmI CTRYAG 1 cut(s) 435
BfuAI ACCTGC 1 cut(s) 150
BglII AGATCT 1 cut(s) 197
Bme1390I CCNGG 2 cut(s) 307, 457
Bme18I GGWCC 2 cut(s) 39, 453
BmgT120I GGNCC 3 cut(s) 39, 167, 453
BmiI GGNNCC 2 cut(s) 454, 455
BmrFI CCNGG 2 cut(s) 307, 457
BmsI GCATC 2 cut(s) 291, 433
BpmI CTGGAG 1 cut(s) 117
BpuMI CCSGG 2 cut(s) 307, 457
BsaI GGTCTC 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 305
Bsc4I CCNNNNNNNGG 4 cut(s) 12, 152, 385, 418
Bse21I CCTNAGG 1 cut(s) 11
Bse3DI GCAATG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 305
BseGI GGATG 2 cut(s) 244, 531
BseLI CCNNNNNNNGG 4 cut(s) 12, 152, 385, 418
BseMI GCAATG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 296
BseRI GAGGAG 3 cut(s) 506, 509, 512
BseSI GKGCMC 1 cut(s) 604
BseYI CCCAGC 1 cut(s) 631
Bsh1285I CGRYCG 1 cut(s) 461
BshFI GGCC 2 cut(s) 168, 337
BsiEI CGRYCG 1 cut(s) 461
BsiHKAI GWGCWC 1 cut(s) 604
BsiSI CCGG 4 cut(s) 307, 324, 334, 457
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 4 cut(s) 12, 152, 385, 418
BsmAI GTCTC 1 cut(s) 285
BsmFI GGGAC 1 cut(s) 466
BsnI GGCC 2 cut(s) 168, 337
Bso31I GGTCTC 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 604
BspACI CCGC 1 cut(s) 89
BspANI GGCC 2 cut(s) 168, 337
BspCNI CTCAG 1 cut(s) 295
BspLI GGNNCC 2 cut(s) 454, 455
BspMI ACCTGC 1 cut(s) 150
BspPI GGATC 2 cut(s) 287, 488
BspTNI GGTCTC 1 cut(s) 285
BsrBI CCGCTC 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 305
Bst4CI ACNGT 2 cut(s) 64, 439
BstC8I GCNNGC 1 cut(s) 652
BstDEI CTNAG 3 cut(s) 11, 262, 282
BstENI CCTNNNNNAGG 1 cut(s) 10
BstF5I GGATG 2 cut(s) 244, 531
BstMAI GTCTC 1 cut(s) 285
BstMCI CGRYCG 1 cut(s) 461
BstSCI CCNGG 2 cut(s) 305, 455
BstSFI CTRYAG 1 cut(s) 435
BstSLI GKGCMC 1 cut(s) 604
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
Bsu36I CCTNAGG 1 cut(s) 11
BsuRI GGCC 2 cut(s) 168, 337
BtsCI GGATG 2 cut(s) 244, 531
BtsIMutI CAGTG 1 cut(s) 60
BveI ACCTGC 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 652
Cfr13I GGNCC 3 cut(s) 39, 167, 453
DdeI CTNAG 3 cut(s) 11, 262, 282
DraIII CACNNNGTG 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 335
Eco31I GGTCTC 1 cut(s) 285
Eco47I GGWCC 2 cut(s) 39, 453
Eco57I CTGAAG 1 cut(s) 39
Eco81I CCTNAGG 1 cut(s) 11
EcoNI CCTNNNNNAGG 1 cut(s) 10
EcoO109I RGGNCCY 1 cut(s) 453
FaiI YATR 3 cut(s) 72, 353, 539
FalI AAGNNNNNCTT 2 cut(s) 456, 488
FaqI GGGAC 1 cut(s) 466
FbaI TGATCA 3 cut(s) 160, 528, 621
FokI GGATG 2 cut(s) 231, 518
FspBI CTAG 5 cut(s) 36, 102, 195, 204, 661
GsaI CCCAGC 1 cut(s) 635
GsuI CTGGAG 1 cut(s) 117
HaeIII GGCC 2 cut(s) 168, 337
HapII CCGG 4 cut(s) 307, 324, 334, 457
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 652
HinfI GANTC 3 cut(s) 320, 511, 609
HpaI GTTAAC 1 cut(s) 259
HpaII CCGG 4 cut(s) 307, 324, 334, 457
HphI GGTGA 1 cut(s) 461
Hpy166II GTNNAC 3 cut(s) 259, 469, 602
Hpy188I TCNGA 5 cut(s) 160, 285, 428, 463, 626
Hpy188III TCNNGA 5 cut(s) 134, 195, 248, 451, 526
Hpy8I GTNNAC 3 cut(s) 259, 469, 602
Hpy99I CGWCG 1 cut(s) 404
HpyAV CCTTC 4 cut(s) 14, 201, 507, 544
HpyCH4III ACNGT 2 cut(s) 64, 439
HpyCH4IV ACGT 1 cut(s) 76
HpyCH4V TGCA 4 cut(s) 129, 446, 602, 650
HpyF3I CTNAG 3 cut(s) 11, 262, 282
HpySE526I ACGT 1 cut(s) 76
KflI GGGWCCC 1 cut(s) 453
Ksp22I TGATCA 3 cut(s) 160, 528, 621
KspAI GTTAAC 1 cut(s) 259
LweI GCATC 2 cut(s) 291, 433
MaeI CTAG 5 cut(s) 36, 102, 195, 204, 661
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 1 cut(s) 341
MbiI CCGCTC 1 cut(s) 89
MflI RGATCY 1 cut(s) 197
MhlI GDGCHC 1 cut(s) 604
MluCI AATT 3 cut(s) 147, 273, 311
MmeI TCCRAC 1 cut(s) 441
MnlI CCTC 7 cut(s) 16, 132, 393, 527, 530, 533, 545
MseI TTAA 3 cut(s) 219, 258, 267
MspI CCGG 4 cut(s) 307, 324, 334, 457
MspR9I CCNGG 2 cut(s) 307, 457
NciI CCSGG 2 cut(s) 307, 457
NlaIV GGNNCC 2 cut(s) 454, 455
NmeAIII GCCGAG 1 cut(s) 467
NmuCI GTSAC 1 cut(s) 341
PfeI GAWTC 3 cut(s) 320, 511, 609
PflFI GACNNNGTC 1 cut(s) 457
PflMI CCANNNNNTGG 1 cut(s) 152
PpuMI RGGWCCY 1 cut(s) 453
Psp1406I AACGTT 1 cut(s) 76
Psp5II RGGWCCY 1 cut(s) 453
PspFI CCCAGC 1 cut(s) 631
PspN4I GGNNCC 2 cut(s) 454, 455
PspPI GGNCC 3 cut(s) 39, 167, 453
PspPPI RGGWCCY 1 cut(s) 453
PsuI RGATCY 1 cut(s) 197
PsyI GACNNNGTC 1 cut(s) 457
SaqAI TTAA 3 cut(s) 219, 258, 267
Sau96I GGNCC 3 cut(s) 39, 167, 453
ScrFI CCNGG 2 cut(s) 307, 457
SduI GDGCHC 1 cut(s) 604
SfaNI GCATC 2 cut(s) 291, 433
SfcI CTRYAG 1 cut(s) 435
SinI GGWCC 2 cut(s) 39, 453
Sse9I AATT 3 cut(s) 147, 273, 311
SsiI CCGC 1 cut(s) 89
SspMI CTAG 5 cut(s) 36, 102, 195, 204, 661
StyD4I CCNGG 2 cut(s) 305, 455
TaaI ACNGT 2 cut(s) 64, 439
TaiI ACGT 1 cut(s) 79
TaqII GACCGA 1 cut(s) 656
TasI AATT 3 cut(s) 147, 273, 311
TfiI GAWTC 3 cut(s) 320, 511, 609
Tru1I TTAA 3 cut(s) 219, 258, 267
Tru9I TTAA 3 cut(s) 219, 258, 267
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 1 cut(s) 341
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 1 cut(s) 87
TspGWI ACGGA 1 cut(s) 417
TspRI CASTG 1 cut(s) 67
Tth111I GACNNNGTC 1 cut(s) 457
Van91I CCANNNNNTGG 1 cut(s) 152
VneI GTGCAC 1 cut(s) 600
VpaK11BI GGWCC 2 cut(s) 39, 453
XagI CCTNNNNNAGG 1 cut(s) 10
XapI RAATTY 2 cut(s) 273, 311
XbaI TCTAGA 1 cut(s) 194
XspI CTAG 5 cut(s) 36, 102, 195, 204, 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.