Rmu_sc0019808.1_g000004

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019808.1
OG0000147
Physical Location & Seq
Reverse (-)
5145 .. 5555
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019808.1_g000004.1.cds

Sequence Viewer

Length: 411 bp
atgaccattaatagcagaacagaggagctccaagtcatacaggagtctacaactgctaaagctcgtaacaaggagtcctttttaattggagaaattcattctttatggaaaaaagaggaaaaatactggacacaacgatccagagttaagtggcttaaagctagggactcaaataccaaattctttcatttgataaccatccaaagacggcagcggaacaaagtgcttaagcttaaatctgccagtgatgtttggctggaccgtgagggcaccgttcagtctgaagtggagaattatttcaaggacatcttcaagaactcttgtgaaagagattgggatgaggctttacgggcggtggcacaggtttttagccctgagatgaactcttctctcaccaaagatagaatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

136

Amino Acids

16.23

Weight (kDa)

9.55

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 269
AccI GTMKAC 1 cut(s) 47
AciI CCGC 2 cut(s) 214, 353
AclWI GGATC 1 cut(s) 132
AcsI RAATTY 2 cut(s) 93, 179
AcuI CTGAAG 1 cut(s) 303
AflII CTTAAG 1 cut(s) 227
AgsI TTSAA 2 cut(s) 301, 313
AluBI AGCT 4 cut(s) 28, 62, 161, 232
AluI AGCT 4 cut(s) 28, 62, 161, 232
Alw21I GWGCWC 1 cut(s) 30
AlwI GGATC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 211
ApoI RAATTY 2 cut(s) 93, 179
AseI ATTAAT 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 259
AsuHPI GGTGA 1 cut(s) 385
AvaII GGWCC 1 cut(s) 259
BaeGI GKGCMC 1 cut(s) 272
BanI GGYRCC 1 cut(s) 269
BanII GRGCYC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 223
BccI CCATC 1 cut(s) 206
BceAI ACGGC 1 cut(s) 224
BfaI CTAG 1 cut(s) 162
BfrI CTTAAG 1 cut(s) 227
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 271
BplI GAGNNNNNCTC 2 cut(s) 368, 400
BsaBI GATNNNNATC 1 cut(s) 197
Bse1I ACTGG 2 cut(s) 131, 243
Bse8I GATNNNNATC 1 cut(s) 197
BseGI GGATG 2 cut(s) 198, 343
BseJI GATNNNNATC 1 cut(s) 197
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 2 cut(s) 131, 243
BseRI GAGGAG 1 cut(s) 38
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 1 cut(s) 223
BshNI GGYRCC 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 30
BslFI GGGAC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 30, 272
Bsp143I GATC 1 cut(s) 137
BspACI CCGC 2 cut(s) 214, 353
BspCNI CTCAG 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 271
BspPI GGATC 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 269
BspTI CTTAAG 1 cut(s) 227
BsrI ACTGG 2 cut(s) 131, 243
BssMI GATC 1 cut(s) 137
Bst4CI ACNGT 2 cut(s) 263, 274
Bst6I CTCTTC 1 cut(s) 391
BstAFI CTTAAG 1 cut(s) 227
BstDEI CTNAG 1 cut(s) 375
BstF5I GGATG 2 cut(s) 198, 343
BstKTI GATC 1 cut(s) 140
BstMBI GATC 1 cut(s) 137
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstSLI GKGCMC 1 cut(s) 272
BstV1I GCAGC 1 cut(s) 223
BtsCI GGATG 2 cut(s) 198, 343
BtsIMutI CAGTG 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 259
CviJI RGCY 8 cut(s) 28, 62, 154, 161, 232, 256, 344, 372
CviKI_1 RGCY 8 cut(s) 28, 62, 154, 161, 232, 256, 344, 372
DdeI CTNAG 1 cut(s) 375
DpnI GATC 1 cut(s) 139
DpnII GATC 1 cut(s) 137
Eam1104I CTCTTC 1 cut(s) 391
EarI CTCTTC 1 cut(s) 391
Ecl136II GAGCTC 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 259
Eco53kI GAGCTC 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 303
EcoICRI GAGCTC 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 30
FaiI YATR 2 cut(s) 38, 106
FalI AAGNNNNNCTT 4 cut(s) 62, 94, 293, 325
FaqI GGGAC 1 cut(s) 179
FblI GTMKAC 1 cut(s) 47
Fnu4HI GCNGC 1 cut(s) 212
FokI GGATG 2 cut(s) 185, 350
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 212
FspBI CTAG 1 cut(s) 162
GluI GCNGC 1 cut(s) 212
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 4 cut(s) 44, 74, 167, 405
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 2 cut(s) 283, 410
Hpy188III TCNNGA 2 cut(s) 141, 313
Hpy8I GTNNAC 1 cut(s) 48
HpyCH4III ACNGT 2 cut(s) 263, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 1 cut(s) 375
Kzo9I GATC 1 cut(s) 137
LmnI GCTCC 2 cut(s) 25, 33
LpnPI CCDG 7 cut(s) 26, 112, 154, 242, 256, 347, 387
Lsp1109I GCAGC 1 cut(s) 223
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 65
MalI GATC 1 cut(s) 139
MboI GATC 1 cut(s) 137
MboII GAAGA 2 cut(s) 301, 378
MhlI GDGCHC 2 cut(s) 30, 272
MluCI AATT 4 cut(s) 84, 93, 179, 292
MlyI GAGTC 3 cut(s) 53, 83, 161
MnlI CCTC 4 cut(s) 16, 109, 259, 334
MroXI GAANNNNTTC 1 cut(s) 296
MseI TTAA 6 cut(s) 9, 83, 147, 156, 228, 234
MspA1I CMGCKG 1 cut(s) 214
MspCI CTTAAG 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 350
NdeII GATC 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 296
PfeI GAWTC 1 cut(s) 405
PkrI GCNGC 1 cut(s) 213
PleI GAGTC 3 cut(s) 52, 82, 161
PpsI GAGTC 3 cut(s) 52, 82, 161
PshBI ATTAAT 1 cut(s) 9
Psp124BI GAGCTC 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 271
PspPI GGNCC 1 cut(s) 259
SacI GAGCTC 1 cut(s) 30
SaqAI TTAA 6 cut(s) 9, 83, 147, 156, 228, 234
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 1 cut(s) 137
Sau96I GGNCC 1 cut(s) 259
SchI GAGTC 3 cut(s) 53, 83, 161
SduI GDGCHC 2 cut(s) 30, 272
SetI ASST 5 cut(s) 30, 64, 163, 234, 366
SinI GGWCC 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 4 cut(s) 84, 93, 179, 292
SsiI CCGC 2 cut(s) 214, 353
SspMI CTAG 1 cut(s) 162
SstI GAGCTC 1 cut(s) 30
TaaI ACNGT 2 cut(s) 263, 274
TasI AATT 4 cut(s) 84, 93, 179, 292
TfiI GAWTC 1 cut(s) 405
Tru1I TTAA 6 cut(s) 9, 83, 147, 156, 228, 234
Tru9I TTAA 6 cut(s) 9, 83, 147, 156, 228, 234
TscAI CASTG 1 cut(s) 250
TseI GCWGC 1 cut(s) 211
TspDTI ATGAA 3 cut(s) 86, 176, 395
TspRI CASTG 1 cut(s) 250
Vha464I CTTAAG 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 259
VspI ATTAAT 1 cut(s) 9
XapI RAATTY 2 cut(s) 93, 179
XmiI GTMKAC 1 cut(s) 47
XmnI GAANNNNTTC 1 cut(s) 296
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.