Rorug06G0095600

ATP-dependent Clp protease proteolytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000147
Physical Location & Seq
Forward (+)
12784732 .. 12791563
6832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0095600.1

Sequence Viewer

Length: 1347 bp
ATGGCCCAACAGAGCAACGGCGGCAGCGGCGATCTGAGCACGACTCAACAGGCCCAGCCCAACCAGCAACAACAGCAGCAACAGCAACAGCAGCAGCAGCAGTGGATGCATCAGCACCAGCAGCAATGGATGGCGATGCAGTACCCGGCGGCGGCCATGGCGATGATGCAGCAGCAGATGATGGTGTACCCGCAGCATTACATGCCTACTTACGCCGCGCATCCGCATCACAATCCCTACCAGCAGGCTCAGGCCGCCGCCGCCGTGGCCTATCAGCAGCAGCCGCCGCTCAAGCAGCAGCAGCAGCAGCAGCAGTCTCAGTCGCAGCAGAAGATGGGGCCTACTGATGAGGTCAGGACCATCTGGGCTGGCGACCTGCACCATTGGATGGACGAGGCCTACCTTCATGGCTGCTTCGCCTACACCGGCCAGGTTTCTTCAGTAAAGGTTATACGCAATAAGCAAACAGGTCAGACAGAAGGGTATGGTTTTGTTGAGTTCTATTCACGTGAAGCAGCTGAGGAAGTTCTGCAGACCTATAATGGTACTCCTATGCCAAATACAGAGCAGCCTTTTCGTCTGAACTGGGCAACCTTTAGTGCGGGTGACAGACGAGCAGATACTAGTTCTGATCTATCTATATTTGTAGGAGATTTAGCTACAGATGTGACTGACACTATGTTGCAAGAAACCTTTGCTAGTAGATATACATCTGTTAAGGGGGCAAAAGTTGTTCAAGATGCAAATACTGGTCGTTCAAAGGGTTATGGTTTTGTTAGGTTTGGGGATGAAAATGAGAGGACAAAGGCCATTGTGGAAATGAATGGTGCGTATTGTTCGAGCAGGCCCATGCGTATAGGTGTTGCAACGCCCAAAAAATCATCTGGATATCAACAACAGTACTCTTCACAAGGTGGTGGACATGCAAATGGTGCCGTTGCCCAAGGTTCTCAGTCTGATGGCGAGCCCAATAACACAACTATATTTGTTGGAGGGCTTGATTCTGATGTCAATGAGGAAGACCTCAGGCAGCCGTTTTCTCAATTTGGTGAAGTTGTCTCTGTGAAAATACCGGTTGGAAAAGCTTGCGGTTTTGTTCAGTTCGCTAATAGGAAGGATGCTGAGAATGCAATGAATATGCTGAATGCAACTGTTATTGGAAAGCAAACAGTTCGTCTGTCTTGGGGTCGCAGTCAAGGCAACAAGCAGTGGAGATCGGACTCAAGTAACCAGTGGAACAATGGAGGACATTATGGAGGGCAGGGGTATGGTGGGTACGCAAATGCTGCGCCACAGAATCCAGATCTGAGTATGCATGCTGCAGCTGCGATTAACGGGTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04112 ko04212 map04112 map04212
Pfam Domains
Protein Families
CLP_protease

Protein Analysis

448

Amino Acids

49.42

Weight (kDa)

6.31

Isoelectric Point (pI)

56.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 124 - 188 3.2e-11 RNA recognition motif
RRM_1 PF00076 214 - 284 4.8e-16 RNA recognition motif
RRM_1 PF00076 328 - 391 1.3e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 384
AccB1I GGYRCC 1 cut(s) 932
AccB7I CCANNNNNTGG 1 cut(s) 388
AccBSI CCGCTC 1 cut(s) 289
AccII CGCG 1 cut(s) 218
AcoI YGGCCR 2 cut(s) 153, 427
AcuI CTGAAG 1 cut(s) 423
AcvI CACGTG 1 cut(s) 509
AdeI CACNNNGTG 1 cut(s) 914
AfaI GTAC 5 cut(s) 143, 188, 547, 902, 1277
AfiI CCNNNNNNNGG 2 cut(s) 151, 388
AgeI ACCGGT 1 cut(s) 1072
AgsI TTSAA 2 cut(s) 737, 759
AhlI ACTAGT 1 cut(s) 623
AjnI CCWGG 1 cut(s) 429
AluBI AGCT 4 cut(s) 518, 659, 1085, 1325
AluI AGCT 4 cut(s) 518, 659, 1085, 1325
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 2 cut(s) 321, 1063
ArsI GACNNNNNNTTYG 2 cut(s) 1159, 1191
AsiGI ACCGGT 1 cut(s) 1072
AspLEI GCGC 2 cut(s) 220, 1291
AspS9I GGNCC 5 cut(s) 4, 52, 338, 357, 846
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 2 cut(s) 617, 1061
AvaII GGWCC 1 cut(s) 357
AxyI CCTNAGG 1 cut(s) 1025
BanI GGYRCC 1 cut(s) 932
BanII GRGCYC 1 cut(s) 969
BbrPI CACGTG 1 cut(s) 509
BbsI GAAGAC 2 cut(s) 1026, 1332
Bbv12I GWGCWC 1 cut(s) 41
BbvCI CCTCAGC 1 cut(s) 519
BccI CCATC 6 cut(s) 124, 175, 328, 368, 382, 953
BceAI ACGGC 4 cut(s) 34, 248, 920, 1018
BcgI CGANNNNNNTGC 4 cut(s) 557, 591, 1154, 1188
BciT130I CCWGG 1 cut(s) 431
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 2 cut(s) 321, 1063
BcuI ACTAGT 1 cut(s) 623
BfaI CTAG 2 cut(s) 624, 699
BfmI CTRYAG 3 cut(s) 530, 660, 1320
BfuAI ACCTGC 1 cut(s) 384
BglI GCCNNNNNGGC 1 cut(s) 266
BglII AGATCT 1 cut(s) 1303
BmcAI AGTACT 1 cut(s) 902
Bme1390I CCNGG 2 cut(s) 146, 431
Bme18I GGWCC 1 cut(s) 357
BmgT120I GGNCC 5 cut(s) 4, 52, 338, 357, 846
BmiI GGNNCC 2 cut(s) 339, 934
BmrFI CCNGG 2 cut(s) 146, 431
BmrI ACTGGG 1 cut(s) 595
BmsI GCATC 8 cut(s) 96, 118, 126, 156, 229, 235, 730, 1108
BmuI ACTGGG 1 cut(s) 595
BpiI GAAGAC 2 cut(s) 1026, 1332
BplI GAGNNNNNCTC 2 cut(s) 28, 60
Bpu10I CCTNAGC 2 cut(s) 249, 519
BpuEI CTTGAG 2 cut(s) 275, 1207
BpuMI CCSGG 1 cut(s) 146
BsaAI YACGTR 1 cut(s) 509
BsaBI GATNNNNATC 1 cut(s) 709
BsaJI CCNNGG 3 cut(s) 156, 264, 943
BsaWI WCCGGW 1 cut(s) 1072
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 388
Bse118I RCCGGY 2 cut(s) 425, 1072
Bse1I ACTGG 3 cut(s) 590, 754, 1231
Bse21I CCTNAGG 1 cut(s) 1025
Bse3DI GCAATG 2 cut(s) 131, 1137
Bse8I GATNNNNATC 1 cut(s) 709
BseBI CCWGG 1 cut(s) 431
BseDI CCNNGG 3 cut(s) 156, 264, 943
BseGI GGATG 6 cut(s) 111, 135, 220, 393, 793, 1123
BseJI GATNNNNATC 1 cut(s) 709
BseLI CCNNNNNNNGG 2 cut(s) 151, 388
BseMI GCAATG 2 cut(s) 131, 1137
BseMII CTCAG 8 cut(s) 26, 263, 332, 510, 965, 1039, 1113, 1298
BseNI ACTGG 3 cut(s) 590, 754, 1231
BseYI CCCAGC 1 cut(s) 54
BsgI GTGCAG 1 cut(s) 362
Bsh1236I CGCG 1 cut(s) 218
BshNI GGYRCC 1 cut(s) 932
BshTI ACCGGT 1 cut(s) 1072
BsiHKAI GWGCWC 1 cut(s) 41
BsiSI CCGG 3 cut(s) 146, 426, 1073
BslI CCNNNNNNNGG 2 cut(s) 151, 388
BsmAI GTCTC 2 cut(s) 321, 1063
BsmI GAATGC 2 cut(s) 1132, 1150
Bsp1286I GDGCHC 2 cut(s) 41, 969
Bsp143I GATC 4 cut(s) 31, 631, 1214, 1303
Bsp19I CCATGG 1 cut(s) 156
BspCNI CTCAG 8 cut(s) 27, 262, 331, 511, 964, 1038, 1114, 1299
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 2 cut(s) 339, 934
BspMAI CTGCAG 2 cut(s) 534, 1324
BspMI ACCTGC 1 cut(s) 384
BspT107I GGYRCC 1 cut(s) 932
BsrBI CCGCTC 1 cut(s) 289
BsrDI GCAATG 2 cut(s) 131, 1137
BsrFI RCCGGY 2 cut(s) 425, 1072
BsrI ACTGG 3 cut(s) 590, 754, 1231
BssAI RCCGGY 2 cut(s) 425, 1072
BssECI CCNNGG 3 cut(s) 156, 264, 943
BssMI GATC 4 cut(s) 31, 631, 1214, 1303
BssT1I CCWWGG 2 cut(s) 156, 943
Bst2UI CCWGG 1 cut(s) 431
Bst4CI ACNGT 3 cut(s) 900, 1153, 1171
Bst6I CTCTTC 1 cut(s) 910
BstAPI GCANNNNNTGC 4 cut(s) 106, 202, 932, 1286
BstBAI YACGTR 1 cut(s) 509
BstC8I GCNNGC 6 cut(s) 246, 370, 845, 965, 1087, 1317
BstDEI CTNAG 8 cut(s) 35, 249, 318, 519, 951, 1025, 1122, 1307
BstDSI CCRYGG 2 cut(s) 156, 264
BstF5I GGATG 6 cut(s) 111, 135, 220, 393, 793, 1123
BstFNI CGCG 1 cut(s) 218
BstHHI GCGC 2 cut(s) 220, 1291
BstKTI GATC 4 cut(s) 34, 634, 1217, 1306
BstMAI GTCTC 2 cut(s) 321, 1063
BstMBI GATC 4 cut(s) 31, 631, 1214, 1303
BstNI CCWGG 1 cut(s) 431
BstNSI RCATGY 3 cut(s) 205, 926, 1319
BstSCI CCNGG 2 cut(s) 144, 429
BstSFI CTRYAG 3 cut(s) 530, 660, 1320
BstUI CGCG 1 cut(s) 218
BstV2I GAAGAC 2 cut(s) 1026, 1332
BstX2I RGATCY 1 cut(s) 1303
BstYI RGATCY 1 cut(s) 1303
Bsu36I CCTNAGG 1 cut(s) 1025
BtgI CCRYGG 2 cut(s) 156, 264
BtgZI GCGATG 2 cut(s) 149, 176
BtsCI GGATG 6 cut(s) 111, 135, 220, 393, 793, 1123
BtsI GCAGTG 2 cut(s) 107, 1214
BtsIMutI CAGTG 3 cut(s) 107, 1214, 1238
BveI ACCTGC 1 cut(s) 384
Cac8I GCNNGC 6 cut(s) 246, 370, 845, 965, 1087, 1317
CfoI GCGC 2 cut(s) 220, 1291
Cfr10I RCCGGY 2 cut(s) 425, 1072
Cfr13I GGNCC 5 cut(s) 4, 52, 338, 357, 846
Csp6I GTAC 5 cut(s) 142, 187, 546, 901, 1276
CspAI ACCGGT 1 cut(s) 1072
CviAII CATG 6 cut(s) 157, 202, 407, 850, 923, 1316
CviQI GTAC 5 cut(s) 142, 187, 546, 901, 1276
DdeI CTNAG 8 cut(s) 35, 249, 318, 519, 951, 1025, 1122, 1307
DpnI GATC 4 cut(s) 33, 633, 1216, 1305
DpnII GATC 4 cut(s) 31, 631, 1214, 1303
DraIII CACNNNGTG 1 cut(s) 914
EaeI YGGCCR 2 cut(s) 153, 427
Eam1104I CTCTTC 1 cut(s) 910
EarI CTCTTC 1 cut(s) 910
Eco130I CCWWGG 2 cut(s) 156, 943
Eco147I AGGCCT 1 cut(s) 398
Eco24I GRGCYC 1 cut(s) 969
Eco32I GATATC 1 cut(s) 890
Eco47I GGWCC 1 cut(s) 357
Eco57I CTGAAG 1 cut(s) 423
Eco72I CACGTG 1 cut(s) 509
Eco81I CCTNAGG 1 cut(s) 1025
EcoO109I RGGNCCY 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 429
EcoRV GATATC 1 cut(s) 890
EcoT14I CCWWGG 2 cut(s) 156, 943
EcoT22I ATGCAT 2 cut(s) 111, 1317
EcoT38I GRGCYC 1 cut(s) 969
ErhI CCWWGG 2 cut(s) 156, 943
FaeI CATG 6 cut(s) 160, 205, 410, 853, 926, 1319
FatI CATG 6 cut(s) 156, 201, 406, 849, 922, 1315
FauI CCCGC 2 cut(s) 198, 595
FokI GGATG 6 cut(s) 118, 142, 207, 400, 800, 1130
FriOI GRGCYC 1 cut(s) 969
FspBI CTAG 2 cut(s) 624, 699
GlaI GCGC 2 cut(s) 219, 1290
GsaI CCCAGC 1 cut(s) 58
HapII CCGG 3 cut(s) 146, 426, 1073
HhaI GCGC 2 cut(s) 220, 1291
Hin1II CATG 6 cut(s) 160, 205, 410, 853, 926, 1319
Hin6I GCGC 2 cut(s) 218, 1289
HinP1I GCGC 2 cut(s) 218, 1289
HindIII AAGCTT 1 cut(s) 1083
HinfI GANTC 4 cut(s) 43, 1001, 1220, 1297
HpaII CCGG 3 cut(s) 146, 426, 1073
HphI GGTGA 2 cut(s) 617, 1061
Hpy166II GTNNAC 2 cut(s) 187, 920
Hpy188I TCNGA 8 cut(s) 36, 474, 582, 631, 958, 1006, 1219, 1308
Hpy188III TCNNGA 4 cut(s) 355, 737, 885, 1301
Hpy8I GTNNAC 2 cut(s) 187, 920
HpyAV CCTTC 3 cut(s) 413, 473, 1108
HpyCH4III ACNGT 3 cut(s) 900, 1153, 1171
HpyCH4IV ACGT 1 cut(s) 508
HpyF3I CTNAG 8 cut(s) 35, 249, 318, 519, 951, 1025, 1122, 1307
HpySE526I ACGT 1 cut(s) 508
Hsp92II CATG 6 cut(s) 160, 205, 410, 853, 926, 1319
HspAI GCGC 2 cut(s) 218, 1289
Kzo9I GATC 4 cut(s) 31, 631, 1214, 1303
LweI GCATC 8 cut(s) 96, 118, 126, 156, 229, 235, 730, 1108
MaeI CTAG 2 cut(s) 624, 699
MaeII ACGT 1 cut(s) 508
MaeIII GTNAC 3 cut(s) 605, 667, 1226
MalI GATC 4 cut(s) 33, 633, 1216, 1305
MbiI CCGCTC 1 cut(s) 289
MboI GATC 4 cut(s) 31, 631, 1214, 1303
MboII GAAGA 5 cut(s) 343, 429, 897, 1031, 1332
MflI RGATCY 1 cut(s) 1303
MhlI GDGCHC 2 cut(s) 41, 969
MluCI AATT 1 cut(s) 1043
MlyI GAGTC 2 cut(s) 37, 1214
MmeI TCCRAC 2 cut(s) 970, 1057
MnlI CCTC 9 cut(s) 343, 388, 514, 792, 986, 1009, 1034, 1238, 1250
Mph1103I ATGCAT 2 cut(s) 111, 1317
MseI TTAA 3 cut(s) 717, 1332, 1345
MslI CAYNNNNRTG 2 cut(s) 161, 927
MspA1I CMGCKG 3 cut(s) 27, 518, 1325
MspI CCGG 3 cut(s) 146, 426, 1073
MspR9I CCNGG 2 cut(s) 146, 431
Mva1269I GAATGC 2 cut(s) 1132, 1150
MvaI CCWGG 1 cut(s) 431
MvnI CGCG 1 cut(s) 218
NciI CCSGG 1 cut(s) 146
NcoI CCATGG 1 cut(s) 156
NdeII GATC 4 cut(s) 31, 631, 1214, 1303
NlaIII CATG 6 cut(s) 160, 205, 410, 853, 926, 1319
NlaIV GGNNCC 2 cut(s) 339, 934
NmuCI GTSAC 2 cut(s) 605, 667
NsiI ATGCAT 2 cut(s) 111, 1317
NspI RCATGY 3 cut(s) 205, 926, 1319
PaeI GCATGC 1 cut(s) 1319
PceI AGGCCT 1 cut(s) 398
PctI GAATGC 2 cut(s) 1132, 1150
PfeI GAWTC 2 cut(s) 1001, 1297
PflMI CCANNNNNTGG 1 cut(s) 388
PinAI ACCGGT 1 cut(s) 1072
PleI GAGTC 2 cut(s) 37, 1214
PmaCI CACGTG 1 cut(s) 509
PmlI CACGTG 1 cut(s) 509
PpsI GAGTC 2 cut(s) 37, 1214
Ppu21I YACGTR 1 cut(s) 509
Psp6I CCWGG 1 cut(s) 429
PspCI CACGTG 1 cut(s) 509
PspFI CCCAGC 1 cut(s) 54
PspGI CCWGG 1 cut(s) 429
PspN4I GGNNCC 2 cut(s) 339, 934
PspPI GGNCC 5 cut(s) 4, 52, 338, 357, 846
PstI CTGCAG 2 cut(s) 534, 1324
PsuI RGATCY 1 cut(s) 1303
PvuII CAGCTG 2 cut(s) 518, 1325
RsaI GTAC 5 cut(s) 143, 188, 547, 902, 1277
RsaNI GTAC 5 cut(s) 142, 187, 546, 901, 1276
RseI CAYNNNNRTG 2 cut(s) 161, 927
SaqAI TTAA 3 cut(s) 717, 1332, 1345
Sau3AI GATC 4 cut(s) 31, 631, 1214, 1303
Sau96I GGNCC 5 cut(s) 4, 52, 338, 357, 846
ScaI AGTACT 1 cut(s) 902
SchI GAGTC 2 cut(s) 37, 1214
ScrFI CCNGG 2 cut(s) 146, 431
SduI GDGCHC 2 cut(s) 41, 969
SfaNI GCATC 8 cut(s) 96, 118, 126, 156, 229, 235, 730, 1108
SfcI CTRYAG 3 cut(s) 530, 660, 1320
SinI GGWCC 1 cut(s) 357
SmiMI CAYNNNNRTG 2 cut(s) 161, 927
SmlI CTYRAG 2 cut(s) 290, 1222
SmoI CTYRAG 2 cut(s) 290, 1222
SpeI ACTAGT 1 cut(s) 623
SphI GCATGC 1 cut(s) 1319
Sse9I AATT 1 cut(s) 1043
SseBI AGGCCT 1 cut(s) 398
SspMI CTAG 2 cut(s) 624, 699
StuI AGGCCT 1 cut(s) 398
StyD4I CCNGG 2 cut(s) 144, 429
StyI CCWWGG 2 cut(s) 156, 943
TaaI ACNGT 3 cut(s) 900, 1153, 1171
TaiI ACGT 1 cut(s) 511
TaqI TCGA 1 cut(s) 839
TasI AATT 1 cut(s) 1043
TatI WGTACW 1 cut(s) 900
TfiI GAWTC 2 cut(s) 1001, 1297
Tru1I TTAA 3 cut(s) 717, 1332, 1345
Tru9I TTAA 3 cut(s) 717, 1332, 1345
TscAI CASTG 3 cut(s) 107, 1214, 1238
TseFI GTSAC 2 cut(s) 605, 667
Tsp45I GTSAC 2 cut(s) 605, 667
TspDTI ATGAA 4 cut(s) 395, 804, 836, 1148
TspRI CASTG 3 cut(s) 107, 1214, 1238
Van91I CCANNNNNTGG 1 cut(s) 388
VpaK11BI GGWCC 1 cut(s) 357
XceI RCATGY 3 cut(s) 205, 926, 1319
XcmI CCANNNNNNNNNTGG 1 cut(s) 1238
XspI CTAG 2 cut(s) 624, 699
ZrmI AGTACT 1 cut(s) 902
Zsp2I ATGCAT 2 cut(s) 111, 1317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.