FvH4_4g10365

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000147
Physical Location & Seq
Reverse (-)
13939611 .. 13943109
3499 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10365.t1

Sequence Viewer

Length: 1854 bp
ATGGGCTATGGTTGCAGCTTCAATGTTAGTCCAAGTGGTACAACTGGGGGATTAAGCTTATGGTGGAAGGATGATCATGCAGTGAAGATTGAGGACTTTTCTAAATTTTTCATTGATACTACTATCACATCTATAGAATTGGGGCATGTGTTTCAGGTGACTTGGATGTATGGGCCTCCTTATCAGGAAGATAAAGCTGACTTCTGGAGCAGGTGGAATTTCAGCAAGCAAGGGAATTGTCCGTGGCTGATCATTGGTGACCTCAATGAAGTTATTTTTCAGCATGAGAGGGAAGGTGGAGCTCCATGGGATTATTGTAGACGCAGGTACTTGAACCTTTTTATGTCTACTAACTCCCTAATGGACATTGGTTTTAAAGACCCTAGGTTCACTTGGGCTAGGAAGGAGAATGGGATTATCATTTTACAGGAGTGTATTGATCGAAGTCTCATATGTCATGATTGGGTTTTGAACTGGCCAAATTCTTGCCCTACTCATCTTGCAAGAATTAGGTCGGATCATAATCCATTACTCTTTACTACGGATCCGGGATGGATCAAGAAAATTCCCACCTTCAAATTTGATGCTGCTTGGGTCAATGATGCAGAGACTATTCCTATTATAGAGGAAGCATGGGTGAAAAATCCAAATATGTCTAATGTGTCACTTTGGAATGAAAACTTGGGCAGATGTCGCTCCAAACTGTTAGGGTGGAGTCGCCGCAAATACCCTAGATGTGATAAAGAGTTAATCAAGGAATGTTTGTTTGACTTGGAGACTTTACAGTGTGCTAATCCTTTTGATAGTATGAAGGAGCAGGAAAGGTTATCTTCCAAACTTGGGGACTTGTGGATCAAAGAGGAACAATATTGGCATCAAAGGTCGAGCATACATTGGCTAACTGCTGGTGATTCCAACACCCGGTTTTTTCATCTCTCGACTCTCCACCCTATCTTTCAAGGATCTGGCCCTAGATGCTGGGGGGATGTGTTTATGGGGGTTAAATCTATGGAGGGTGGTTTGGGATTCAAGGATATGCACCATTATAATGTTGCACTACTGGCCAAACAGTGTTGGCGCATTCTTTCCCAACCCGAGTCTTTATGGGTTAAACAAATCGCCAATGGTTTGAAGGTGAATATATGGAAGGAGAATTGGCTTCATCCCCTTGATGCACGCCCTATTCAGACTTCTACTCAGATAAGTAACAATGATCCACAATTGGTATTTGAGATCATTGATTGGCCTAGCAAAACATGGAACCTAGACTCAATTCTCCATCTTTTACAACCTTCCGAAGCTAACAAAATTCTACTAATTCCCATTGGGAGTCATGATGGGGAGGATAGGATCATTTGGTCTTGGAACAAAAGGGGGGTTTACACTGTTAGTTCGGGATACACCTGGATTAACAGTAGGTATCGGGTGATCAACCCTCCTAAGTGCATCTCATCTCATTTGTTGGAGACAGCAATGTGGAGACAATTATGGAAGATAAGAGCTCCTCCTAAGGTGAAAATGTTCTTTTGGAAAGCCATAAGTGGTGCCATTGCAACTTTCAAGAATATGTTTATACGAAAGCTTGCAAGCACACCTCTGTGTCCTATATGTGGTGCCTATGAAGAATCTACTGCATTTGTTGGAGTATCTGGAAGAGTCGATGCAGCTTCGTTTATGACAGGAGACCAATTAGCCCTCCCGCTGTTATTCAATCCAGCCTTAATCTGGCCTTGGAATTTTGGAGTGCAAACCGGAAAGACCCACCACCACCTCTGGACTTCGAAGCGAGTACTCGAAAACGATGGCAGCCCCCGCTATTGGATGTTGTGGATGTATGTTATGATGCCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

618

Amino Acids

71.74

Weight (kDa)

8.49

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 488 - 548 1.2e-09 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1047
AarI CACCTGC 1 cut(s) 201
Acc36I ACCTGC 2 cut(s) 201, 315
AccB1I GGYRCC 2 cut(s) 1544, 1613
AccI GTMKAC 2 cut(s) 319, 347
AciI CCGC 3 cut(s) 721, 1700, 1813
AclWI GGATC 8 cut(s) 525, 539, 552, 563, 860, 970, 1208, 1358
AcoI YGGCCR 2 cut(s) 476, 1062
AcsI RAATTY 7 cut(s) 104, 217, 481, 564, 578, 1308, 1735
AfaI GTAC 3 cut(s) 40, 329, 1791
AfiI CCNNNNNNNGG 5 cut(s) 840, 921, 1610, 1725, 1818
AgsI TTSAA 9 cut(s) 22, 334, 472, 577, 959, 1030, 1132, 1561, 1711
AjnI CCWGG 1 cut(s) 1403
AjuI GAANNNNNNNTTGG 2 cut(s) 665, 697
AleI CACNNNNGTG 1 cut(s) 1597
AluBI AGCT 8 cut(s) 18, 57, 197, 302, 1301, 1502, 1582, 1667
AluI AGCT 8 cut(s) 18, 57, 197, 302, 1301, 1502, 1582, 1667
Alw21I GWGCWC 2 cut(s) 304, 1504
Alw26I GTCTC 6 cut(s) 452, 602, 770, 1460, 1474, 1677
AlwI GGATC 8 cut(s) 525, 539, 552, 563, 860, 970, 1208, 1358
Ama87I CYCGRG 1 cut(s) 1094
AoxI GGCC 6 cut(s) 173, 476, 967, 1062, 1244, 1727
ApeKI GCWGC 4 cut(s) 15, 587, 1664, 1806
ApoI RAATTY 7 cut(s) 104, 217, 481, 564, 578, 1308, 1735
Asp700I GAANNNNTTC 1 cut(s) 1520
AspA2I CCTAGG 1 cut(s) 383
AspLEI GCGC 1 cut(s) 1080
AspS9I GGNCC 2 cut(s) 173, 968
AsuC2I CCSGG 2 cut(s) 549, 922
AsuHPI GGTGA 7 cut(s) 169, 269, 649, 920, 1147, 1438, 1525
AsuII TTCGAA 1 cut(s) 1781
AvaI CYCGRG 1 cut(s) 1094
AvrII CCTAGG 1 cut(s) 383
AxyI CCTNAGG 1 cut(s) 1509
BalI TGGCCA 2 cut(s) 478, 1064
BamHI GGATCC 1 cut(s) 544
BanI GGYRCC 2 cut(s) 1544, 1613
BanII GRGCYC 2 cut(s) 304, 1504
Bbv12I GWGCWC 2 cut(s) 304, 1504
BbvI GCAGC 4 cut(s) 27, 574, 1676, 1818
BccI CCATC 4 cut(s) 546, 1287, 1331, 1796
BciT130I CCWGG 1 cut(s) 1405
BciVI GTATCC 1 cut(s) 1391
BclI TGATCA 3 cut(s) 73, 249, 1428
BcnI CCSGG 2 cut(s) 549, 922
BcoDI GTCTC 6 cut(s) 452, 602, 770, 1460, 1474, 1677
BfaI CTAG 6 cut(s) 384, 399, 732, 972, 1248, 1265
BfmI CTRYAG 1 cut(s) 132
BfuAI ACCTGC 2 cut(s) 201, 315
BfuI GTATCC 1 cut(s) 1391
BisI GCNGC 5 cut(s) 16, 588, 721, 1665, 1807
BlnI CCTAGG 1 cut(s) 383
BlsI GCNGC 5 cut(s) 17, 589, 722, 1666, 1808
BmcAI AGTACT 1 cut(s) 1791
Bme1390I CCNGG 3 cut(s) 549, 922, 1405
BmeT110I CYCGRG 1 cut(s) 1094
BmgT120I GGNCC 2 cut(s) 173, 968
BmiI GGNNCC 4 cut(s) 546, 1262, 1546, 1615
BmrFI CCNGG 3 cut(s) 549, 922, 1405
BmrI ACTGGG 1 cut(s) 54
BmsI GCATC 8 cut(s) 574, 592, 883, 965, 1162, 1455, 1651, 1833
BmuI ACTGGG 1 cut(s) 54
BpmI CTGGAG 1 cut(s) 226
Bpu14I TTCGAA 1 cut(s) 1781
BpuMI CCSGG 2 cut(s) 549, 922
BsaBI GATNNNNATC 1 cut(s) 522
BsaI GGTCTC 1 cut(s) 1677
BsaJI CCNNGG 4 cut(s) 242, 305, 383, 1730
BsaWI WCCGGW 1 cut(s) 1751
Bsc4I CCNNNNNNNGG 5 cut(s) 840, 921, 1610, 1725, 1818
Bse1I ACTGG 3 cut(s) 49, 479, 1065
Bse21I CCTNAGG 1 cut(s) 1509
Bse3DI GCAATG 2 cut(s) 1479, 1548
Bse8I GATNNNNATC 1 cut(s) 522
BseBI CCWGG 1 cut(s) 1405
BseDI CCNNGG 4 cut(s) 242, 305, 383, 1730
BseGI GGATG 7 cut(s) 76, 171, 557, 991, 1162, 1827, 1836
BseJI GATNNNNATC 1 cut(s) 522
BseLI CCNNNNNNNGG 5 cut(s) 840, 921, 1610, 1725, 1818
BseMI GCAATG 2 cut(s) 1479, 1548
BseMII CTCAG 1 cut(s) 1211
BseNI ACTGG 3 cut(s) 49, 479, 1065
BseRI GAGGAG 1 cut(s) 1494
BseXI GCAGC 4 cut(s) 27, 574, 1676, 1818
BseYI CCCAGC 1 cut(s) 978
BshFI GGCC 6 cut(s) 175, 478, 969, 1064, 1246, 1729
BshNI GGYRCC 2 cut(s) 1544, 1613
BsiHKAI GWGCWC 2 cut(s) 304, 1504
BsiHKCI CYCGRG 1 cut(s) 1094
BsiSI CCGG 3 cut(s) 548, 922, 1752
BslFI GGGAC 1 cut(s) 857
BslI CCNNNNNNNGG 5 cut(s) 840, 921, 1610, 1725, 1818
BsmAI GTCTC 6 cut(s) 452, 602, 770, 1460, 1474, 1677
BsmFI GGGAC 1 cut(s) 857
BsmI GAATGC 1 cut(s) 1080
BsnI GGCC 6 cut(s) 175, 478, 969, 1064, 1246, 1729
Bso31I GGTCTC 1 cut(s) 1677
BsoBI CYCGRG 1 cut(s) 1094
Bsp119I TTCGAA 1 cut(s) 1781
Bsp1286I GDGCHC 2 cut(s) 304, 1504
Bsp19I CCATGG 1 cut(s) 305
BspACI CCGC 3 cut(s) 721, 1700, 1813
BspANI GGCC 6 cut(s) 175, 478, 969, 1064, 1246, 1729
BspCNI CTCAG 1 cut(s) 1210
BspHI TCATGA 2 cut(s) 457, 1333
BspLI GGNNCC 4 cut(s) 546, 1262, 1546, 1615
BspMI ACCTGC 2 cut(s) 201, 315
BspPI GGATC 8 cut(s) 525, 539, 552, 563, 860, 970, 1208, 1358
BspT104I TTCGAA 1 cut(s) 1781
BspT107I GGYRCC 2 cut(s) 1544, 1613
BspTNI GGTCTC 1 cut(s) 1677
BsrDI GCAATG 2 cut(s) 1479, 1548
BsrI ACTGG 3 cut(s) 49, 479, 1065
BssECI CCNNGG 4 cut(s) 242, 305, 383, 1730
BssT1I CCWWGG 3 cut(s) 305, 383, 1730
Bst2UI CCWGG 1 cut(s) 1405
Bst4CI ACNGT 5 cut(s) 705, 786, 1071, 1387, 1415
Bst6I CTCTTC 1 cut(s) 1648
BstBI TTCGAA 1 cut(s) 1781
BstC8I GCNNGC 4 cut(s) 227, 1177, 1584, 1588
BstDEI CTNAG 3 cut(s) 1197, 1440, 1509
BstDSI CCRYGG 2 cut(s) 242, 305
BstEII GGTNACC 1 cut(s) 257
BstF5I GGATG 7 cut(s) 76, 171, 557, 991, 1162, 1827, 1836
BstHHI GCGC 1 cut(s) 1080
BstMAI GTCTC 6 cut(s) 452, 602, 770, 1460, 1474, 1677
BstMWI GCNNNNNNNGC 5 cut(s) 12, 693, 975, 1061, 1812
BstNI CCWGG 1 cut(s) 1405
BstNSI RCATGY 1 cut(s) 149
BstPI GGTNACC 1 cut(s) 257
BstSCI CCNGG 3 cut(s) 547, 920, 1403
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 4 cut(s) 27, 574, 1676, 1818
BstX2I RGATCY 2 cut(s) 544, 962
BstYI RGATCY 2 cut(s) 544, 962
Bsu36I CCTNAGG 1 cut(s) 1509
BsuI GTATCC 1 cut(s) 1391
BsuRI GGCC 6 cut(s) 175, 478, 969, 1064, 1246, 1729
BtgI CCRYGG 2 cut(s) 242, 305
BtsCI GGATG 7 cut(s) 76, 171, 557, 991, 1162, 1827, 1836
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 4 cut(s) 87, 791, 1076, 1383
BveI ACCTGC 2 cut(s) 201, 315
Cac8I GCNNGC 4 cut(s) 227, 1177, 1584, 1588
CciI TCATGA 2 cut(s) 457, 1333
CfoI GCGC 1 cut(s) 1080
Cfr13I GGNCC 2 cut(s) 173, 968
CseI GACGC 1 cut(s) 330
Csp6I GTAC 3 cut(s) 39, 328, 1790
CviAII CATG 8 cut(s) 77, 146, 284, 306, 458, 633, 1257, 1334
CviQI GTAC 3 cut(s) 39, 328, 1790
DdeI CTNAG 3 cut(s) 1197, 1440, 1509
DraI TTTAAA 1 cut(s) 376
EaeI YGGCCR 2 cut(s) 476, 1062
Eam1104I CTCTTC 1 cut(s) 1648
EarI CTCTTC 1 cut(s) 1648
Ecl136II GAGCTC 2 cut(s) 302, 1502
Eco130I CCWWGG 3 cut(s) 305, 383, 1730
Eco24I GRGCYC 2 cut(s) 304, 1504
Eco31I GGTCTC 1 cut(s) 1677
Eco53kI GAGCTC 2 cut(s) 302, 1502
Eco81I CCTNAGG 1 cut(s) 1509
Eco88I CYCGRG 1 cut(s) 1094
Eco91I GGTNACC 1 cut(s) 257
EcoICRI GAGCTC 2 cut(s) 302, 1502
EcoO65I GGTNACC 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 1403
EcoT14I CCWWGG 3 cut(s) 305, 383, 1730
EcoT38I GRGCYC 2 cut(s) 304, 1504
ErhI CCWWGG 3 cut(s) 305, 383, 1730
FaeI CATG 8 cut(s) 80, 149, 287, 309, 461, 636, 1260, 1337
FalI AAGNNNNNCTT 2 cut(s) 814, 846
FaqI GGGAC 1 cut(s) 857
FatI CATG 8 cut(s) 76, 145, 283, 305, 457, 632, 1256, 1333
FauI CCCGC 2 cut(s) 1707, 1820
FauNDI CATATG 1 cut(s) 452
FbaI TGATCA 3 cut(s) 73, 249, 1428
FblI GTMKAC 2 cut(s) 319, 347
Fnu4HI GCNGC 5 cut(s) 16, 588, 721, 1665, 1807
FokI GGATG 7 cut(s) 83, 178, 564, 998, 1149, 1834, 1843
FriOI GRGCYC 2 cut(s) 304, 1504
Fsp4HI GCNGC 5 cut(s) 16, 588, 721, 1665, 1807
FspBI CTAG 6 cut(s) 384, 399, 732, 972, 1248, 1265
GlaI GCGC 1 cut(s) 1079
GluI GCNGC 5 cut(s) 16, 588, 721, 1665, 1807
GsaI CCCAGC 1 cut(s) 982
GsuI CTGGAG 1 cut(s) 226
HaeIII GGCC 6 cut(s) 175, 478, 969, 1064, 1246, 1729
HapII CCGG 3 cut(s) 548, 922, 1752
HgaI GACGC 1 cut(s) 330
HhaI GCGC 1 cut(s) 1080
Hin1II CATG 8 cut(s) 80, 149, 287, 309, 461, 636, 1260, 1337
Hin6I GCGC 1 cut(s) 1078
HinP1I GCGC 1 cut(s) 1078
HindIII AAGCTT 2 cut(s) 55, 1580
HinfI GANTC 9 cut(s) 715, 911, 940, 1026, 1097, 1268, 1330, 1625, 1656
HpaII CCGG 3 cut(s) 548, 922, 1752
HphI GGTGA 7 cut(s) 169, 269, 649, 920, 1147, 1438, 1525
Hpy166II GTNNAC 4 cut(s) 320, 348, 390, 1381
Hpy188I TCNGA 4 cut(s) 517, 1188, 1200, 1297
Hpy8I GTNNAC 4 cut(s) 320, 348, 390, 1381
HpyAV CCTTC 8 cut(s) 61, 287, 397, 583, 805, 1126, 1141, 1302
HpyCH4III ACNGT 5 cut(s) 705, 786, 1071, 1387, 1415
HpyF10VI GCNNNNNNNGC 5 cut(s) 12, 693, 975, 1061, 1812
HpyF3I CTNAG 3 cut(s) 1197, 1440, 1509
Hsp92II CATG 8 cut(s) 80, 149, 287, 309, 461, 636, 1260, 1337
HspAI GCGC 1 cut(s) 1078
Ksp22I TGATCA 3 cut(s) 73, 249, 1428
LmnI GCTCC 6 cut(s) 207, 299, 307, 701, 814, 1507
Lsp1109I GCAGC 4 cut(s) 27, 574, 1676, 1818
LweI GCATC 8 cut(s) 574, 592, 883, 965, 1162, 1455, 1651, 1833
MaeI CTAG 6 cut(s) 384, 399, 732, 972, 1248, 1265
MaeIII GTNAC 4 cut(s) 157, 257, 663, 1205
MboII GAAGA 6 cut(s) 97, 200, 822, 1504, 1634, 1665
MfeI CAATTG 1 cut(s) 1220
MflI RGATCY 2 cut(s) 544, 962
MhlI GDGCHC 2 cut(s) 304, 1504
MlsI TGGCCA 2 cut(s) 478, 1064
MluNI TGGCCA 2 cut(s) 478, 1064
MlyI GAGTC 6 cut(s) 724, 934, 1106, 1262, 1339, 1665
MmeI TCCRAC 4 cut(s) 495, 939, 1443, 1621
Mox20I TGGCCA 2 cut(s) 478, 1064
MroXI GAANNNNTTC 1 cut(s) 1520
MscI TGGCCA 2 cut(s) 478, 1064
MseI TTAA 7 cut(s) 53, 375, 749, 1002, 1110, 1410, 1721
MslI CAYNNNNRTG 2 cut(s) 1047, 1597
Msp20I TGGCCA 2 cut(s) 478, 1064
MspA1I CMGCKG 1 cut(s) 1702
MspI CCGG 3 cut(s) 548, 922, 1752
MspR9I CCNGG 3 cut(s) 549, 922, 1405
MunI CAATTG 1 cut(s) 1220
Mva1269I GAATGC 1 cut(s) 1080
MvaI CCWGG 1 cut(s) 1405
MwoI GCNNNNNNNGC 5 cut(s) 12, 693, 975, 1061, 1812
NciI CCSGG 2 cut(s) 549, 922
NcoI CCATGG 1 cut(s) 305
NdeI CATATG 1 cut(s) 452
NlaIII CATG 8 cut(s) 80, 149, 287, 309, 461, 636, 1260, 1337
NlaIV GGNNCC 4 cut(s) 546, 1262, 1546, 1615
NmuCI GTSAC 3 cut(s) 157, 257, 663
NspI RCATGY 1 cut(s) 149
NspV TTCGAA 1 cut(s) 1781
OliI CACNNNNGTG 1 cut(s) 1597
PagI TCATGA 2 cut(s) 457, 1333
PaqCI CACCTGC 1 cut(s) 201
PctI GAATGC 1 cut(s) 1080
PdmI GAANNNNTTC 1 cut(s) 1520
PfeI GAWTC 3 cut(s) 911, 1026, 1625
PfoI TCCNGGA 1 cut(s) 547
PkrI GCNGC 5 cut(s) 17, 589, 722, 1666, 1808
PleI GAGTC 6 cut(s) 723, 934, 1105, 1262, 1338, 1664
PpsI GAGTC 6 cut(s) 723, 934, 1105, 1262, 1338, 1664
PsiI TTATAA 1 cut(s) 1047
Psp124BI GAGCTC 2 cut(s) 304, 1504
Psp6I CCWGG 1 cut(s) 1403
PspEI GGTNACC 1 cut(s) 257
PspFI CCCAGC 1 cut(s) 978
PspGI CCWGG 1 cut(s) 1403
PspN4I GGNNCC 4 cut(s) 546, 1262, 1546, 1615
PspPI GGNCC 2 cut(s) 173, 968
PsuI RGATCY 2 cut(s) 544, 962
RsaI GTAC 3 cut(s) 40, 329, 1791
RsaNI GTAC 3 cut(s) 39, 328, 1790
RseI CAYNNNNRTG 2 cut(s) 1047, 1597
SacI GAGCTC 2 cut(s) 304, 1504
SaqAI TTAA 7 cut(s) 53, 375, 749, 1002, 1110, 1410, 1721
SatI GCNGC 5 cut(s) 16, 588, 721, 1665, 1807
Sau96I GGNCC 2 cut(s) 173, 968
ScaI AGTACT 1 cut(s) 1791
SchI GAGTC 6 cut(s) 724, 934, 1106, 1262, 1339, 1665
ScrFI CCNGG 3 cut(s) 549, 922, 1405
SduI GDGCHC 2 cut(s) 304, 1504
SfaNI GCATC 8 cut(s) 574, 592, 883, 965, 1162, 1455, 1651, 1833
SfcI CTRYAG 1 cut(s) 132
SfuI TTCGAA 1 cut(s) 1781
SmiMI CAYNNNNRTG 2 cut(s) 1047, 1597
SsiI CCGC 3 cut(s) 721, 1700, 1813
SspI AATATT 1 cut(s) 869
SspMI CTAG 6 cut(s) 384, 399, 732, 972, 1248, 1265
SstI GAGCTC 2 cut(s) 304, 1504
StyD4I CCNGG 3 cut(s) 547, 920, 1403
StyI CCWWGG 3 cut(s) 305, 383, 1730
TaaI ACNGT 5 cut(s) 705, 786, 1071, 1387, 1415
TaqI TCGA 6 cut(s) 442, 884, 938, 1659, 1781, 1794
TatI WGTACW 1 cut(s) 1789
TauI GCSGC 1 cut(s) 723
TfiI GAWTC 3 cut(s) 911, 1026, 1625
Tru1I TTAA 7 cut(s) 53, 375, 749, 1002, 1110, 1410, 1721
Tru9I TTAA 7 cut(s) 53, 375, 749, 1002, 1110, 1410, 1721
TscAI CASTG 4 cut(s) 87, 791, 1076, 1390
TseFI GTSAC 3 cut(s) 157, 257, 663
TseI GCWGC 4 cut(s) 15, 587, 1664, 1806
Tsp45I GTSAC 3 cut(s) 157, 257, 663
TspDTI ATGAA 7 cut(s) 100, 282, 690, 824, 920, 1151, 1635
TspGWI ACGGA 2 cut(s) 231, 557
TspRI CASTG 4 cut(s) 87, 791, 1076, 1390
XapI RAATTY 7 cut(s) 104, 217, 481, 564, 578, 1308, 1735
XceI RCATGY 1 cut(s) 149
XcmI CCANNNNNNNNNTGG 1 cut(s) 1722
XmaJI CCTAGG 1 cut(s) 383
XmiI GTMKAC 2 cut(s) 319, 347
XmnI GAANNNNTTC 1 cut(s) 1520
XspI CTAG 6 cut(s) 384, 399, 732, 972, 1248, 1265
ZrmI AGTACT 1 cut(s) 1791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.