pycom16g23820

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000147
Physical Location & Seq
Forward (+)
25078003 .. 25078809
807 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g23820.2

Sequence Viewer

Length: 726 bp
ATGTGTTGGAATGATAGTGCACTTAATCTGAATGTGATTGCTGCTTCTCCTAGACATATCCATGCTCTAGTTAAAGATGTGCATACAAACATTGAGTACTATGCTACTTTTGTCTATTTCTACCCTAAAAAATCTGTCCAAGATAGTATGTGGGAGGAGTTTTTATTCTTAAACCCCGAAGATAAACCCTGGATGTTGCCAGAAGACTTCAACAATATTACATTCATTCAAGAAAAATGGGGTGGGAACCAAAGTGTCAATGCTCGTATGACTAAATTTGTGGACTTCATGAACAATGTTGGGCTTATTTCGTTACAAGCTTTGGGTGTTCCTTTCACTTGGCCTAACAAACACAAGGATGACTTGCTTATTTTTGAGAGATTAGACAAAGTTGTTGCTAATTCCTATTGGTTTGAATTGCACCCAAGCTACATTCTTCACAACTATCCTATCCTGGGGTCTAACCACAGTCCTGTGTTTATTGACACTGTTGGTTCTCAAGTTAGTCGAAGGAGAAAGTGCTTCAAATTTGAAGCCATGTGGAATCTTCACCCTGAGTTTAAACAGTTTGTTAAGGGGGCTTGGAAATGCATTTTTGGGTCAATTAGGGAGAAAAAAGATAAAATTTTGAAGGAGCTGAATTGTGTCCAGAAGGAACTTATTTCTTTCAACTATAATGCTAACTCTTTAAACAATTTCAATGAAAAAGTTCACCTAAAGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos Exo_endo_phos_2

Protein Analysis

242

Amino Acids

28.36

Weight (kDa)

8.55

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 275, 527, 624
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 1 cut(s) 455
AgsI TTSAA 8 cut(s) 211, 230, 416, 526, 533, 631, 670, 700
AjnI CCWGG 2 cut(s) 188, 453
AluBI AGCT 3 cut(s) 320, 429, 637
AluI AGCT 3 cut(s) 320, 429, 637
Alw21I GWGCWC 1 cut(s) 22
Alw44I GTGCAC 1 cut(s) 18
AoxI GGCC 1 cut(s) 341
ApaLI GTGCAC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 3 cut(s) 275, 527, 624
Asp700I GAANNNNTTC 1 cut(s) 708
AsuHPI GGTGA 2 cut(s) 542, 704
BaeGI GKGCMC 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 1 cut(s) 28
BciT130I CCWGG 2 cut(s) 190, 455
BfaI CTAG 2 cut(s) 51, 68
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BmcAI AGTACT 1 cut(s) 98
Bme1390I CCNGG 2 cut(s) 190, 455
BmiI GGNNCC 1 cut(s) 248
BmrFI CCNGG 2 cut(s) 190, 455
BpiI GAAGAC 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 483
BsaJI CCNNGG 2 cut(s) 188, 454
Bsc4I CCNNNNNNNGG 1 cut(s) 455
BseBI CCWGG 2 cut(s) 190, 455
BseDI CCNNGG 2 cut(s) 188, 454
BseGI GGATG 2 cut(s) 198, 364
BseLI CCNNNNNNNGG 1 cut(s) 455
BseMII CTCAG 1 cut(s) 546
BseRI GAGGAG 1 cut(s) 170
BseSI GKGCMC 1 cut(s) 22
BseXI GCAGC 1 cut(s) 28
BshFI GGCC 1 cut(s) 343
BsiHKAI GWGCWC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 455
BsnI GGCC 1 cut(s) 343
Bsp1286I GDGCHC 1 cut(s) 22
BspANI GGCC 1 cut(s) 343
BspCNI CTCAG 1 cut(s) 547
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 188, 454
Bst2UI CCWGG 2 cut(s) 190, 455
Bst4CI ACNGT 3 cut(s) 470, 490, 567
BstDEI CTNAG 1 cut(s) 555
BstF5I GGATG 2 cut(s) 198, 364
BstNI CCWGG 2 cut(s) 190, 455
BstSCI CCNGG 2 cut(s) 188, 453
BstSLI GKGCMC 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 28
BstV2I GAAGAC 1 cut(s) 210
BsuRI GGCC 1 cut(s) 343
BtsCI GGATG 2 cut(s) 198, 364
BtsIMutI CAGTG 1 cut(s) 486
CciI TCATGA 1 cut(s) 288
Csp6I GTAC 1 cut(s) 97
CviAII CATG 3 cut(s) 62, 289, 538
CviJI RGCY 8 cut(s) 304, 320, 343, 429, 536, 581, 637, 722
CviKI_1 RGCY 8 cut(s) 304, 320, 343, 429, 536, 581, 637, 722
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 1 cut(s) 555
DraI TTTAAA 2 cut(s) 562, 690
EcoRII CCWGG 2 cut(s) 188, 453
EcoT22I ATGCAT 1 cut(s) 593
FaeI CATG 3 cut(s) 65, 292, 541
FaiI YATR 9 cut(s) 57, 63, 84, 102, 149, 269, 290, 539, 675
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FatI CATG 3 cut(s) 61, 288, 537
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 2 cut(s) 205, 371
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 2 cut(s) 51, 68
GluI GCNGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 343
Hin1II CATG 3 cut(s) 65, 292, 541
HindIII AAGCTT 1 cut(s) 318
HinfI GANTC 1 cut(s) 544
HphI GGTGA 2 cut(s) 542, 704
Hpy166II GTNNAC 3 cut(s) 20, 283, 712
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 3 cut(s) 230, 289, 649
Hpy8I GTNNAC 3 cut(s) 20, 283, 712
HpyAV CCTTC 3 cut(s) 504, 625, 646
HpyCH4III ACNGT 3 cut(s) 470, 490, 567
HpyCH4V TGCA 4 cut(s) 20, 82, 421, 591
HpyF3I CTNAG 1 cut(s) 555
Hsp92II CATG 3 cut(s) 65, 292, 541
LmnI GCTCC 1 cut(s) 634
LpnPI CCDG 8 cut(s) 175, 202, 213, 440, 467, 486, 567, 662
Lsp1109I GCAGC 1 cut(s) 28
MaeI CTAG 2 cut(s) 51, 68
MaeIII GTNAC 1 cut(s) 312
MboII GAAGA 4 cut(s) 191, 215, 428, 539
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 8 cut(s) 275, 400, 416, 527, 603, 624, 640, 694
MnlI CCTC 1 cut(s) 148
Mph1103I ATGCAT 1 cut(s) 593
MroXI GAANNNNTTC 1 cut(s) 708
MseI TTAA 7 cut(s) 24, 72, 170, 561, 573, 689, 724
MslI CAYNNNNRTG 2 cut(s) 60, 357
MspR9I CCNGG 2 cut(s) 190, 455
MssI GTTTAAAC 1 cut(s) 562
MvaI CCWGG 2 cut(s) 190, 455
NlaIII CATG 3 cut(s) 65, 292, 541
NlaIV GGNNCC 1 cut(s) 248
NsiI ATGCAT 1 cut(s) 593
PagI TCATGA 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 708
PfeI GAWTC 1 cut(s) 544
PkrI GCNGC 1 cut(s) 43
PmeI GTTTAAAC 1 cut(s) 562
Psp6I CCWGG 2 cut(s) 188, 453
PspGI CCWGG 2 cut(s) 188, 453
PspN4I GGNNCC 1 cut(s) 248
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
RseI CAYNNNNRTG 2 cut(s) 60, 357
SaqAI TTAA 7 cut(s) 24, 72, 170, 561, 573, 689, 724
SatI GCNGC 1 cut(s) 42
ScaI AGTACT 1 cut(s) 98
ScrFI CCNGG 2 cut(s) 190, 455
SduI GDGCHC 1 cut(s) 22
SetI ASST 4 cut(s) 322, 431, 639, 717
SmiMI CAYNNNNRTG 2 cut(s) 60, 357
SmlI CTYRAG 1 cut(s) 498
SmoI CTYRAG 1 cut(s) 498
Sse9I AATT 8 cut(s) 275, 400, 416, 527, 603, 624, 640, 694
SspI AATATT 1 cut(s) 217
SspMI CTAG 2 cut(s) 51, 68
StyD4I CCNGG 2 cut(s) 188, 453
TaaI ACNGT 3 cut(s) 470, 490, 567
TaqI TCGA 1 cut(s) 508
TasI AATT 8 cut(s) 275, 400, 416, 527, 603, 624, 640, 694
TatI WGTACW 1 cut(s) 96
TfiI GAWTC 1 cut(s) 544
Tru1I TTAA 7 cut(s) 24, 72, 170, 561, 573, 689, 724
Tru9I TTAA 7 cut(s) 24, 72, 170, 561, 573, 689, 724
TscAI CASTG 1 cut(s) 493
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 4 cut(s) 214, 277, 305, 717
TspRI CASTG 1 cut(s) 493
VneI GTGCAC 1 cut(s) 18
XapI RAATTY 3 cut(s) 275, 527, 624
XmnI GAANNNNTTC 1 cut(s) 708
XspI CTAG 2 cut(s) 51, 68
ZrmI AGTACT 1 cut(s) 98
Zsp2I ATGCAT 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.