Rorug02G0318200

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000147
Physical Location & Seq
Reverse (-)
38802024 .. 38803764
1741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0318200.1

Sequence Viewer

Length: 342 bp
ATGGTGAGCAATGTTCAATCAAAATTTAAGATCCAAGGATACAGTGCTGTTGTCAACTCTGATAAGGATCGCCTAAGAATCTTTAGACCTTGCATTCGTAGAAAATGTCGACAAAAGGGAGGCATTAGAGCACCTGGATCTCATACTTCTATAGTTCAATGCTTTGATGTGATCATTGATCAAGGGGGAAACAAGCAACAGAGGGACCAACTATATGAGATCATCAAGAATGGCTGGTCTCTTGGGAAAGCATCTCCTTGCATCAGTGCATTTGCTCCTGGACAAGCTGCAGCTTATAAGATGTTTGAGACAATTAACAGAAAGCCGGAGATAGATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

113

Amino Acids

12.65

Weight (kDa)

9.86

Isoelectric Point (pI)

35.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 297
AccI GTMKAC 1 cut(s) 109
AclWI GGATC 3 cut(s) 25, 75, 145
AcsI RAATTY 1 cut(s) 23
AgsI TTSAA 2 cut(s) 17, 158
AjnI CCWGG 2 cut(s) 133, 277
AluBI AGCT 2 cut(s) 287, 293
AluI AGCT 2 cut(s) 287, 293
Alw21I GWGCWC 1 cut(s) 133
Alw26I GTCTC 2 cut(s) 243, 302
AlwI GGATC 3 cut(s) 25, 75, 145
ApeKI GCWGC 2 cut(s) 287, 290
ApoI RAATTY 1 cut(s) 23
ArsI GACNNNNNNTTYG 2 cut(s) 78, 110
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 2 cut(s) 274, 302
BciT130I CCWGG 2 cut(s) 135, 279
BciVI GTATCC 1 cut(s) 32
BclI TGATCA 2 cut(s) 171, 178
BcoDI GTCTC 2 cut(s) 243, 302
BfmI CTRYAG 2 cut(s) 150, 288
BfuI GTATCC 1 cut(s) 32
BisI GCNGC 2 cut(s) 288, 291
BlsI GCNGC 2 cut(s) 289, 292
Bme1390I CCNGG 2 cut(s) 135, 279
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 2 cut(s) 135, 279
BmsI GCATC 3 cut(s) 260, 270, 325
BsaBI GATNNNNATC 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 16
Bse8I GATNNNNATC 1 cut(s) 66
BseBI CCWGG 2 cut(s) 135, 279
BseDI CCNNGG 1 cut(s) 34
BseJI GATNNNNATC 1 cut(s) 66
BseMI GCAATG 1 cut(s) 16
BseXI GCAGC 2 cut(s) 274, 302
BsiHKAI GWGCWC 1 cut(s) 133
BsiSI CCGG 1 cut(s) 326
BslFI GGGAC 1 cut(s) 218
BsmAI GTCTC 2 cut(s) 243, 302
BsmFI GGGAC 1 cut(s) 218
BsmI GAATGC 1 cut(s) 93
Bso31I GGTCTC 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 6 cut(s) 30, 67, 137, 171, 178, 219
BspLI GGNNCC 1 cut(s) 206
BspMAI CTGCAG 1 cut(s) 292
BspPI GGATC 3 cut(s) 25, 75, 145
BspTNI GGTCTC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 6 cut(s) 30, 67, 137, 171, 178, 219
BssT1I CCWWGG 1 cut(s) 34
Bst2UI CCWGG 2 cut(s) 135, 279
Bst4CI ACNGT 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 74
BstKTI GATC 6 cut(s) 33, 70, 140, 174, 181, 222
BstMAI GTCTC 2 cut(s) 243, 302
BstMBI GATC 6 cut(s) 30, 67, 137, 171, 178, 219
BstNI CCWGG 2 cut(s) 135, 279
BstSCI CCNGG 2 cut(s) 133, 277
BstSFI CTRYAG 2 cut(s) 150, 288
BstV1I GCAGC 2 cut(s) 274, 302
BstX2I RGATCY 2 cut(s) 30, 137
BstYI RGATCY 2 cut(s) 30, 137
BsuI GTATCC 1 cut(s) 32
BtsIMutI CAGTG 2 cut(s) 49, 271
Cfr13I GGNCC 1 cut(s) 205
CviJI RGCY 4 cut(s) 234, 287, 293, 325
CviKI_1 RGCY 4 cut(s) 234, 287, 293, 325
DdeI CTNAG 1 cut(s) 74
DpnI GATC 6 cut(s) 32, 69, 139, 173, 180, 221
DpnII GATC 6 cut(s) 30, 67, 137, 171, 178, 219
Eco130I CCWWGG 1 cut(s) 34
Eco31I GGTCTC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 205
EcoRII CCWGG 2 cut(s) 133, 277
EcoT14I CCWWGG 1 cut(s) 34
EcoT22I ATGCAT 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 34
FaiI YATR 6 cut(s) 144, 152, 214, 216, 297, 340
FaqI GGGAC 1 cut(s) 218
FbaI TGATCA 2 cut(s) 171, 178
FblI GTMKAC 1 cut(s) 109
Fnu4HI GCNGC 2 cut(s) 288, 291
Fsp4HI GCNGC 2 cut(s) 288, 291
GluI GCNGC 2 cut(s) 288, 291
HapII CCGG 1 cut(s) 326
HincII GTYRAC 2 cut(s) 55, 110
HindII GTYRAC 2 cut(s) 55, 110
HinfI GANTC 1 cut(s) 78
HpaII CCGG 1 cut(s) 326
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 55, 110
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 1 cut(s) 226
Hpy8I GTNNAC 2 cut(s) 55, 110
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4V TGCA 5 cut(s) 93, 261, 269, 290, 338
HpyF3I CTNAG 1 cut(s) 74
Ksp22I TGATCA 2 cut(s) 171, 178
Kzo9I GATC 6 cut(s) 30, 67, 137, 171, 178, 219
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 5 cut(s) 120, 147, 220, 264, 291
Lsp1109I GCAGC 2 cut(s) 274, 302
LweI GCATC 3 cut(s) 260, 270, 325
MalI GATC 6 cut(s) 32, 69, 139, 173, 180, 221
MboI GATC 6 cut(s) 30, 67, 137, 171, 178, 219
MflI RGATCY 2 cut(s) 30, 137
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 2 cut(s) 23, 312
MnlI CCTC 2 cut(s) 113, 195
Mph1103I ATGCAT 1 cut(s) 340
MseI TTAA 2 cut(s) 27, 315
MspI CCGG 1 cut(s) 326
MspR9I CCNGG 2 cut(s) 135, 279
Mva1269I GAATGC 1 cut(s) 93
MvaI CCWGG 2 cut(s) 135, 279
NdeII GATC 6 cut(s) 30, 67, 137, 171, 178, 219
NlaIV GGNNCC 1 cut(s) 206
NsiI ATGCAT 1 cut(s) 340
PctI GAATGC 1 cut(s) 93
PfeI GAWTC 1 cut(s) 78
PfoI TCCNGGA 1 cut(s) 277
PkrI GCNGC 2 cut(s) 289, 292
PsiI TTATAA 1 cut(s) 297
Psp6I CCWGG 2 cut(s) 133, 277
PspGI CCWGG 2 cut(s) 133, 277
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 205
PstI CTGCAG 1 cut(s) 292
PsuI RGATCY 2 cut(s) 30, 137
SalI GTCGAC 1 cut(s) 108
SaqAI TTAA 2 cut(s) 27, 315
SatI GCNGC 2 cut(s) 288, 291
Sau3AI GATC 6 cut(s) 30, 67, 137, 171, 178, 219
Sau96I GGNCC 1 cut(s) 205
ScrFI CCNGG 2 cut(s) 135, 279
SduI GDGCHC 1 cut(s) 133
SetI ASST 4 cut(s) 91, 136, 289, 295
SfaNI GCATC 3 cut(s) 260, 270, 325
SfcI CTRYAG 2 cut(s) 150, 288
SinI GGWCC 1 cut(s) 205
Sse9I AATT 2 cut(s) 23, 312
StyD4I CCNGG 2 cut(s) 133, 277
StyI CCWWGG 1 cut(s) 34
TaaI ACNGT 1 cut(s) 44
TaqI TCGA 1 cut(s) 109
TasI AATT 2 cut(s) 23, 312
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 2 cut(s) 27, 315
Tru9I TTAA 2 cut(s) 27, 315
TscAI CASTG 2 cut(s) 49, 271
TseI GCWGC 2 cut(s) 287, 290
TspRI CASTG 2 cut(s) 49, 271
VpaK11BI GGWCC 1 cut(s) 205
XapI RAATTY 1 cut(s) 23
XmiI GTMKAC 1 cut(s) 109
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.