Rh1DG338300

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000147
Physical Location & Seq
Reverse (-)
56363063 .. 56370934
7872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG338300.1

Sequence Viewer

Length: 1050 bp
ATGTCTTGGAATTGTCAGGGATTGGGGCCATCTTTGACAGGTGGTTCACTTCGTCACCTTCATCGACAACATCGGCCCTCTCTGCTTTTCTTGATGGAAACTCGGCAACAGGAAAGTGTTTTGAACTCTTGGCAAACTGAACTGAAGTATGACCATCTTTTTGTTGTTGATCCTGTTAATACGGGTGGTGGTCTAGCTTTGTTTTGGGATAAGTCGGTTCAAGTTGTAGTTCTTAGTAGTTCTGTTAGCTATGTACATACACTAGTTACTTTTGTTCAACAAGCAGTCTCTTGTAAGATAACTTGGATGTATGGAACTCCTCATGTTAATGAGAAAACTTCCTTTTGGCGTGCTCTGTATAATAGGTTTCCCGCTCACCATGCTCCCTGGTTATGTTTAGGTGACTTTAATGAGACTCTGTGGCATTATGAGAAATGGGGGGGCATTCCTCAGGCAGCATGGCGTATGTCCTTATTTCATGATTTTATTAACCAGGTTCAGCTGCAAGATCTTAACATCCAAGGTCCTGATTTTACTTGGTTTTGCTATCAGCATGGTAGGCTTCATATCAAAGAAAGACTTGATCGTTGTTTGGGTAACTCCGCCTGGTGCCACCTCTTCCCCAAATCTCAAGTGTTTCATTTACATAGAATTGGCTCTGATCATAGACCCATTCTATTAGACCTGCAGCCTACTGAATCTCGCTCACCCCGTCTTTTTCGCTTTGAACAGATGTGGATAACCAAATCTGATTGTGCAGATGTTATTCGGCGCAGTTGGGAATATTTTCCAGGGCCATCTCCTACCTGCAATTGGACTTCGAACCTTGATCGATGTCGTAAATCTCTCACTGTGTGGTCTAAGGAAACCTTCCCCAATACTAAGGTTCAACTTGATTCTCTGCATTTGGAACTTCAGACTCTTCAGCAGAGTACCTCTCCAGATTCTGCAGCCCAGATTTCCCGGTCCGAAGCAGCAAATGATCTCGATGTGGCGTATCTTCTGCAGCAGATACATGAAGTGTGGTTGATGAAACAAATACTGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

349

Amino Acids

40.67

Weight (kDa)

7.69

Isoelectric Point (pI)

54.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 1 - 222 3.5e-14 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 693, 815
AccB1I GGYRCC 1 cut(s) 609
AccBSI CCGCTC 1 cut(s) 374
AciI CCGC 2 cut(s) 372, 603
AclWI GGATC 1 cut(s) 164
AcuI CTGAAG 3 cut(s) 164, 899, 908
AdeI CACNNNGTG 1 cut(s) 855
AfaI GTAC 2 cut(s) 255, 934
AfiI CCNNNNNNNGG 1 cut(s) 813
AgsI TTSAA 5 cut(s) 124, 221, 278, 728, 890
AhlI ACTAGT 1 cut(s) 262
AjnI CCWGG 4 cut(s) 386, 492, 605, 790
AluBI AGCT 3 cut(s) 197, 249, 502
AluI AGCT 3 cut(s) 197, 249, 502
Alw21I GWGCWC 1 cut(s) 355
Alw26I GTCTC 2 cut(s) 292, 407
AlwI GGATC 1 cut(s) 164
AlwNI CAGNNNCTG 1 cut(s) 947
AoxI GGCC 3 cut(s) 26, 74, 794
ApeKI GCWGC 6 cut(s) 455, 502, 688, 950, 974, 1006
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
Asp700I GAANNNNTTC 1 cut(s) 786
AspLEI GCGC 1 cut(s) 774
AspS9I GGNCC 5 cut(s) 26, 75, 524, 794, 966
AsuC2I CCSGG 1 cut(s) 964
AsuHPI GGTGA 4 cut(s) 47, 368, 413, 699
AsuII TTCGAA 1 cut(s) 821
AvaII GGWCC 2 cut(s) 524, 966
AxyI CCTNAGG 1 cut(s) 450
BanI GGYRCC 1 cut(s) 609
Bbv12I GWGCWC 1 cut(s) 355
BbvI GCAGC 6 cut(s) 467, 489, 700, 962, 986, 1018
BccI CCATC 4 cut(s) 37, 88, 162, 805
BciT130I CCWGG 4 cut(s) 388, 494, 607, 792
BclI TGATCA 1 cut(s) 661
BcnI CCSGG 1 cut(s) 964
BcoDI GTCTC 2 cut(s) 292, 407
BcuI ACTAGT 1 cut(s) 262
BfaI CTAG 3 cut(s) 194, 263, 1048
BfmI CTRYAG 3 cut(s) 686, 948, 1004
BfuAI ACCTGC 2 cut(s) 693, 815
BglII AGATCT 1 cut(s) 508
BisI GCNGC 6 cut(s) 456, 503, 689, 951, 975, 1007
BlsI GCNGC 6 cut(s) 457, 504, 690, 952, 976, 1008
Bme1390I CCNGG 5 cut(s) 388, 494, 607, 792, 964
Bme18I GGWCC 2 cut(s) 524, 966
BmgT120I GGNCC 5 cut(s) 26, 75, 524, 794, 966
BmiI GGNNCC 2 cut(s) 27, 611
BmrFI CCNGG 5 cut(s) 388, 494, 607, 792, 964
BplI GAGNNNNNCTC 2 cut(s) 922, 954
BpmI CTGGAG 1 cut(s) 924
Bpu14I TTCGAA 1 cut(s) 821
BpuEI CTTGAG 1 cut(s) 615
BpuMI CCSGG 1 cut(s) 964
Bsa29I ATCGAT 1 cut(s) 832
BsaJI CCNNGG 3 cut(s) 386, 520, 791
Bsc4I CCNNNNNNNGG 1 cut(s) 813
Bse21I CCTNAGG 1 cut(s) 450
BseBI CCWGG 4 cut(s) 388, 494, 607, 792
BseCI ATCGAT 1 cut(s) 832
BseDI CCNNGG 3 cut(s) 386, 520, 791
BseGI GGATG 2 cut(s) 312, 516
BseLI CCNNNNNNNGG 1 cut(s) 813
BseMII CTCAG 1 cut(s) 464
BseRI GAGGAG 1 cut(s) 309
BseXI GCAGC 6 cut(s) 467, 489, 700, 962, 986, 1018
BsgI GTGCAG 1 cut(s) 777
BshFI GGCC 3 cut(s) 28, 76, 796
BshNI GGYRCC 1 cut(s) 609
BshVI ATCGAT 1 cut(s) 832
BsiHKAI GWGCWC 1 cut(s) 355
BsiSI CCGG 1 cut(s) 964
BslI CCNNNNNNNGG 1 cut(s) 813
BsmAI GTCTC 2 cut(s) 292, 407
BsmI GAATGC 1 cut(s) 444
BsnI GGCC 3 cut(s) 28, 76, 796
Bsp119I TTCGAA 1 cut(s) 821
Bsp1286I GDGCHC 1 cut(s) 355
Bsp1407I TGTACA 1 cut(s) 253
Bsp143I GATC 6 cut(s) 169, 508, 583, 661, 829, 982
BspACI CCGC 2 cut(s) 372, 603
BspANI GGCC 3 cut(s) 28, 76, 796
BspCNI CTCAG 1 cut(s) 463
BspDI ATCGAT 1 cut(s) 832
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 2 cut(s) 27, 611
BspMAI CTGCAG 3 cut(s) 690, 952, 1008
BspMI ACCTGC 2 cut(s) 693, 815
BspPI GGATC 1 cut(s) 164
BspT104I TTCGAA 1 cut(s) 821
BspT107I GGYRCC 1 cut(s) 609
BsrBI CCGCTC 1 cut(s) 374
BsrGI TGTACA 1 cut(s) 253
BssECI CCNNGG 3 cut(s) 386, 520, 791
BssMI GATC 6 cut(s) 169, 508, 583, 661, 829, 982
BssT1I CCWWGG 1 cut(s) 520
Bst2UI CCWGG 4 cut(s) 388, 494, 607, 792
Bst4CI ACNGT 1 cut(s) 853
Bst6I CTCTTC 2 cut(s) 623, 927
BstAUI TGTACA 1 cut(s) 253
BstBI TTCGAA 1 cut(s) 821
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 4 cut(s) 233, 450, 861, 882
BstF5I GGATG 2 cut(s) 312, 516
BstHHI GCGC 1 cut(s) 774
BstKTI GATC 6 cut(s) 172, 511, 586, 664, 832, 985
BstMAI GTCTC 2 cut(s) 292, 407
BstMBI GATC 6 cut(s) 169, 508, 583, 661, 829, 982
BstMWI GCNNNNNNNGC 3 cut(s) 82, 380, 559
BstNI CCWGG 4 cut(s) 388, 494, 607, 792
BstSCI CCNGG 5 cut(s) 386, 492, 605, 790, 962
BstSFI CTRYAG 3 cut(s) 686, 948, 1004
BstV1I GCAGC 6 cut(s) 467, 489, 700, 962, 986, 1018
BstX2I RGATCY 1 cut(s) 508
BstYI RGATCY 1 cut(s) 508
Bsu15I ATCGAT 1 cut(s) 832
Bsu36I CCTNAGG 1 cut(s) 450
BsuRI GGCC 3 cut(s) 28, 76, 796
BsuTUI ATCGAT 1 cut(s) 832
BtsCI GGATG 2 cut(s) 312, 516
BtsIMutI CAGTG 1 cut(s) 849
BveI ACCTGC 2 cut(s) 693, 815
Cac8I GCNNGC 1 cut(s) 351
CaiI CAGNNNCTG 1 cut(s) 947
CciI TCATGA 1 cut(s) 478
CfoI GCGC 1 cut(s) 774
Cfr13I GGNCC 5 cut(s) 26, 75, 524, 794, 966
ClaI ATCGAT 1 cut(s) 832
CpoI CGGWCCG 1 cut(s) 966
CsiI ACCWGGT 1 cut(s) 492
Csp6I GTAC 2 cut(s) 254, 933
CspI CGGWCCG 1 cut(s) 966
CviAII CATG 6 cut(s) 323, 380, 459, 479, 554, 1016
CviQI GTAC 2 cut(s) 254, 933
DdeI CTNAG 4 cut(s) 233, 450, 861, 882
DpnI GATC 6 cut(s) 171, 510, 585, 663, 831, 984
DpnII GATC 6 cut(s) 169, 508, 583, 661, 829, 982
DraIII CACNNNGTG 1 cut(s) 855
Eam1104I CTCTTC 2 cut(s) 623, 927
EarI CTCTTC 2 cut(s) 623, 927
EciI GGCGGA 1 cut(s) 592
Eco130I CCWWGG 1 cut(s) 520
Eco47I GGWCC 2 cut(s) 524, 966
Eco57I CTGAAG 3 cut(s) 164, 899, 908
Eco81I CCTNAGG 1 cut(s) 450
EcoO109I RGGNCCY 1 cut(s) 524
EcoRII CCWGG 4 cut(s) 386, 492, 605, 790
EcoT14I CCWWGG 1 cut(s) 520
ErhI CCWWGG 1 cut(s) 520
FaeI CATG 6 cut(s) 326, 383, 462, 482, 557, 1019
FalI AAGNNNNNCTT 4 cut(s) 564, 596, 854, 886
FatI CATG 6 cut(s) 322, 379, 458, 478, 553, 1015
FauI CCCGC 1 cut(s) 379
FbaI TGATCA 1 cut(s) 661
Fnu4HI GCNGC 6 cut(s) 456, 503, 689, 951, 975, 1007
FokI GGATG 2 cut(s) 319, 503
Fsp4HI GCNGC 6 cut(s) 456, 503, 689, 951, 975, 1007
FspBI CTAG 3 cut(s) 194, 263, 1048
GlaI GCGC 1 cut(s) 773
GluI GCNGC 6 cut(s) 456, 503, 689, 951, 975, 1007
GsuI CTGGAG 1 cut(s) 924
HaeIII GGCC 3 cut(s) 28, 76, 796
HapII CCGG 1 cut(s) 964
HhaI GCGC 1 cut(s) 774
Hin1II CATG 6 cut(s) 326, 383, 462, 482, 557, 1019
Hin6I GCGC 1 cut(s) 772
HinP1I GCGC 1 cut(s) 772
HinfI GANTC 5 cut(s) 415, 698, 896, 919, 944
HpaII CCGG 1 cut(s) 964
HphI GGTGA 4 cut(s) 47, 368, 413, 699
Hpy166II GTNNAC 1 cut(s) 47
Hpy188I TCNGA 4 cut(s) 661, 751, 918, 970
Hpy188III TCNNGA 5 cut(s) 91, 479, 527, 941, 986
Hpy8I GTNNAC 1 cut(s) 47
HpyAV CCTTC 2 cut(s) 68, 880
HpyCH4III ACNGT 1 cut(s) 853
HpyCH4V TGCA 7 cut(s) 505, 688, 758, 810, 904, 950, 1006
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 380, 559
HpyF3I CTNAG 4 cut(s) 233, 450, 861, 882
Hsp92II CATG 6 cut(s) 326, 383, 462, 482, 557, 1019
HspAI GCGC 1 cut(s) 772
Ksp22I TGATCA 1 cut(s) 661
Kzo9I GATC 6 cut(s) 169, 508, 583, 661, 829, 982
LmnI GCTCC 1 cut(s) 388
Lsp1109I GCAGC 6 cut(s) 467, 489, 700, 962, 986, 1018
MabI ACCWGGT 1 cut(s) 492
MaeI CTAG 3 cut(s) 194, 263, 1048
MaeIII GTNAC 4 cut(s) 53, 265, 401, 596
MalI GATC 6 cut(s) 171, 510, 585, 663, 831, 984
MbiI CCGCTC 1 cut(s) 374
MboI GATC 6 cut(s) 169, 508, 583, 661, 829, 982
MboII GAAGA 3 cut(s) 610, 914, 992
MfeI CAATTG 1 cut(s) 811
MflI RGATCY 1 cut(s) 508
MhlI GDGCHC 1 cut(s) 355
MluCI AATT 3 cut(s) 10, 651, 811
MlyI GAGTC 2 cut(s) 409, 913
MnlI CCTC 5 cut(s) 88, 330, 459, 626, 946
MroXI GAANNNNTTC 1 cut(s) 786
MseI TTAA 5 cut(s) 177, 327, 408, 489, 513
MslI CAYNNNNRTG 1 cut(s) 327
MspA1I CMGCKG 1 cut(s) 502
MspI CCGG 1 cut(s) 964
MspR9I CCNGG 5 cut(s) 388, 494, 607, 792, 964
MunI CAATTG 1 cut(s) 811
Mva1269I GAATGC 1 cut(s) 444
MvaI CCWGG 4 cut(s) 388, 494, 607, 792
MwoI GCNNNNNNNGC 3 cut(s) 82, 380, 559
NciI CCSGG 1 cut(s) 964
NdeII GATC 6 cut(s) 169, 508, 583, 661, 829, 982
NlaIII CATG 6 cut(s) 326, 383, 462, 482, 557, 1019
NlaIV GGNNCC 2 cut(s) 27, 611
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 2 cut(s) 53, 401
NspV TTCGAA 1 cut(s) 821
PagI TCATGA 1 cut(s) 478
PcsI WCGNNNNNNNCGW 1 cut(s) 709
PctI GAATGC 1 cut(s) 444
PdmI GAANNNNTTC 1 cut(s) 786
PfeI GAWTC 3 cut(s) 698, 896, 944
PkrI GCNGC 6 cut(s) 457, 504, 690, 952, 976, 1008
PleI GAGTC 2 cut(s) 409, 913
PpsI GAGTC 2 cut(s) 409, 913
PpuMI RGGWCCY 1 cut(s) 524
Psp5II RGGWCCY 1 cut(s) 524
Psp6I CCWGG 4 cut(s) 386, 492, 605, 790
PspGI CCWGG 4 cut(s) 386, 492, 605, 790
PspN4I GGNNCC 2 cut(s) 27, 611
PspPI GGNCC 5 cut(s) 26, 75, 524, 794, 966
PspPPI RGGWCCY 1 cut(s) 524
PstI CTGCAG 3 cut(s) 690, 952, 1008
PstNI CAGNNNCTG 1 cut(s) 947
PsuI RGATCY 1 cut(s) 508
PvuII CAGCTG 1 cut(s) 502
RsaI GTAC 2 cut(s) 255, 934
RsaNI GTAC 2 cut(s) 254, 933
RseI CAYNNNNRTG 1 cut(s) 327
Rsr2I CGGWCCG 1 cut(s) 966
RsrII CGGWCCG 1 cut(s) 966
SaqAI TTAA 5 cut(s) 177, 327, 408, 489, 513
SatI GCNGC 6 cut(s) 456, 503, 689, 951, 975, 1007
Sau3AI GATC 6 cut(s) 169, 508, 583, 661, 829, 982
Sau96I GGNCC 5 cut(s) 26, 75, 524, 794, 966
SchI GAGTC 2 cut(s) 409, 913
ScrFI CCNGG 5 cut(s) 388, 494, 607, 792, 964
SduI GDGCHC 1 cut(s) 355
SexAI ACCWGGT 1 cut(s) 492
SfcI CTRYAG 3 cut(s) 686, 948, 1004
SfuI TTCGAA 1 cut(s) 821
SinI GGWCC 2 cut(s) 524, 966
SmiMI CAYNNNNRTG 1 cut(s) 327
SmlI CTYRAG 1 cut(s) 630
SmoI CTYRAG 1 cut(s) 630
SpeI ACTAGT 1 cut(s) 262
Sse9I AATT 3 cut(s) 10, 651, 811
SsiI CCGC 2 cut(s) 372, 603
SspI AATATT 1 cut(s) 785
SspMI CTAG 3 cut(s) 194, 263, 1048
StyD4I CCNGG 5 cut(s) 386, 492, 605, 790, 962
StyI CCWWGG 1 cut(s) 520
TaaI ACNGT 1 cut(s) 853
TaqI TCGA 4 cut(s) 64, 821, 832, 987
TasI AATT 3 cut(s) 10, 651, 811
TatI WGTACW 1 cut(s) 253
TfiI GAWTC 3 cut(s) 698, 896, 944
Tru1I TTAA 5 cut(s) 177, 327, 408, 489, 513
Tru9I TTAA 5 cut(s) 177, 327, 408, 489, 513
TscAI CASTG 1 cut(s) 856
TseFI GTSAC 2 cut(s) 53, 401
TseI GCWGC 6 cut(s) 455, 502, 688, 950, 974, 1006
Tsp45I GTSAC 2 cut(s) 53, 401
TspDTI ATGAA 6 cut(s) 50, 467, 554, 629, 1032, 1046
TspRI CASTG 1 cut(s) 856
VpaK11BI GGWCC 2 cut(s) 524, 966
XmnI GAANNNNTTC 1 cut(s) 786
XspI CTAG 3 cut(s) 194, 263, 1048
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.