Rh2BG277700

ribonuclease H protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
30286241 .. 30292406
6166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG277700.1

Sequence Viewer

Length: 909 bp
ATGAGGCTATTATCGTGGAATTGTCAGGGACTGGGGGCGGCCCTGACTGGAAAGTCTCTCCGACGTTTGGTTAAACGTCATAGCCCCTCTATGCTTTTTCTTATGGAGACTCGTCAGCAAGAATCAGTGCTCAAGTTTTGGATGCATCAACTTTGTTTTGACCATTACTTTGTCGTTGATCCTACTGACAATGGGGGTGGTGGTCTTGCTCTCTTTTGGGACAACTCGGTCCAAGTCTCCAGTATTATCGGCACGGTTAATTATATTAATACTAGTCTGTATTTTATTTCTGAAAATTTCCATTGTAATGTGTCTTGGTTGTATGGGAACCCCCATGTTAATCAAAAATCGGTCTTCTGGCGTTCTTTGTACACTGTCTTCTCCCCTCATGTTTTACCTTGGTTGTGCTTGGGGGATTTTAACGAAATCATGTGGCTGCATGAAAAATGGGGTGGCCTCCCTCAGCCTCGGTGGAGGATTAATCTGTTTAAAAACTTCCTGAACCATGCCCACCTAACGGATCTTCTTTTTCAAGGGCCGGATTACACCTGGTACTGCTTCCAACATGGCAAGGTGGTTATCAAGGAGAGGTTGGACCGCGCCTTTGGCAACAATGCTTGGATTGCAAATCAGCCGACTTCCCAGGTTTTTCACCTTCCTTTACTTGGTTCTGATCATCGCCCGATCATGCTGGACACTAAACCCACAGAGCGTCTGACTCCGCCTATCTTCCGGTTCGAACACTTGTGGACCACACATCCAACTAGCACTCAGATTGTCCAAGCCAACTGGCAGAACTCTTCCTCCCCATCTCAGGCTACAAACTGGCTGAATCCAAGCATAGATAATGCAGAGGAACATTGGCTTCTGCAAAAGCATGGTGAAAGATCACATTACTATCATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

302

Amino Acids

35.37

Weight (kDa)

7.8

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 4 - 226 6.8e-14 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 52, 227
AccII CGCG 1 cut(s) 600
AciI CCGC 3 cut(s) 38, 598, 722
AclWI GGATC 2 cut(s) 173, 528
AcsI RAATTY 1 cut(s) 295
AfaI GTAC 2 cut(s) 371, 554
AfiI CCNNNNNNNGG 4 cut(s) 67, 517, 665, 814
AgsI TTSAA 1 cut(s) 533
AhlI ACTAGT 1 cut(s) 272
AjnI CCWGG 2 cut(s) 548, 642
AloI GAACNNNNNNTCC 2 cut(s) 788, 820
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 3 cut(s) 60, 101, 241
AlwI GGATC 2 cut(s) 173, 528
AlwNI CAGNNNCTG 1 cut(s) 31
AoxI GGCC 3 cut(s) 39, 454, 536
ApeKI GCWGC 1 cut(s) 436
ApoI RAATTY 1 cut(s) 295
ArsI GACNNNNNNTTYG 4 cut(s) 152, 184, 587, 619
AseI ATTAAT 2 cut(s) 267, 480
AspLEI GCGC 1 cut(s) 602
AspS9I GGNCC 5 cut(s) 40, 229, 536, 595, 750
AsuHPI GGTGA 2 cut(s) 644, 893
AsuII TTCGAA 1 cut(s) 738
AvaII GGWCC 3 cut(s) 229, 595, 750
BarI GAAGNNNNNNTAC 2 cut(s) 362, 394
BbsI GAAGAC 2 cut(s) 346, 370
Bbv12I GWGCWC 1 cut(s) 132
BbvCI CCTCAGC 1 cut(s) 462
BbvI GCAGC 1 cut(s) 423
BccI CCATC 1 cut(s) 817
BciT130I CCWGG 2 cut(s) 550, 644
BclI TGATCA 1 cut(s) 673
BcoDI GTCTC 3 cut(s) 60, 101, 241
BcuI ACTAGT 1 cut(s) 272
BfaI CTAG 2 cut(s) 273, 765
BisI GCNGC 2 cut(s) 39, 437
BlsI GCNGC 2 cut(s) 40, 438
Bme1390I CCNGG 2 cut(s) 550, 644
Bme18I GGWCC 3 cut(s) 229, 595, 750
BmgT120I GGNCC 5 cut(s) 40, 229, 536, 595, 750
BmiI GGNNCC 1 cut(s) 329
BmrFI CCNGG 2 cut(s) 550, 644
BmrI ACTGGG 1 cut(s) 41
BmsI GCATC 2 cut(s) 132, 154
BmuI ACTGGG 1 cut(s) 41
BpiI GAAGAC 2 cut(s) 346, 370
BpmI CTGGAG 1 cut(s) 223
Bpu10I CCTNAGC 1 cut(s) 462
Bpu14I TTCGAA 1 cut(s) 738
BpuEI CTTGAG 1 cut(s) 116
BsaJI CCNNGG 3 cut(s) 398, 467, 642
BsaWI WCCGGW 1 cut(s) 732
BsaXI ACNNNNNCTCC 2 cut(s) 788, 818
Bsc4I CCNNNNNNNGG 4 cut(s) 67, 517, 665, 814
Bse1I ACTGG 5 cut(s) 36, 52, 240, 794, 830
BseBI CCWGG 2 cut(s) 550, 644
BseDI CCNNGG 3 cut(s) 398, 467, 642
BseGI GGATG 2 cut(s) 147, 757
BseLI CCNNNNNNNGG 4 cut(s) 67, 517, 665, 814
BseMII CTCAG 3 cut(s) 476, 785, 827
BseNI ACTGG 5 cut(s) 36, 52, 240, 794, 830
BseXI GCAGC 1 cut(s) 423
Bsh1236I CGCG 1 cut(s) 600
BshFI GGCC 3 cut(s) 41, 456, 538
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 2 cut(s) 539, 733
BslFI GGGAC 2 cut(s) 42, 233
BslI CCNNNNNNNGG 4 cut(s) 67, 517, 665, 814
BsmAI GTCTC 3 cut(s) 60, 101, 241
BsmFI GGGAC 2 cut(s) 42, 233
BsnI GGCC 3 cut(s) 41, 456, 538
Bsp119I TTCGAA 1 cut(s) 738
Bsp1286I GDGCHC 1 cut(s) 132
Bsp1407I TGTACA 1 cut(s) 369
Bsp143I GATC 5 cut(s) 178, 520, 673, 684, 887
BspACI CCGC 3 cut(s) 38, 598, 722
BspANI GGCC 3 cut(s) 41, 456, 538
BspCNI CTCAG 3 cut(s) 475, 784, 826
BspFNI CGCG 1 cut(s) 600
BspHI TCATGA 1 cut(s) 901
BspLI GGNNCC 1 cut(s) 329
BspPI GGATC 2 cut(s) 173, 528
BspT104I TTCGAA 1 cut(s) 738
BsrGI TGTACA 1 cut(s) 369
BsrI ACTGG 5 cut(s) 36, 52, 240, 794, 830
BssECI CCNNGG 3 cut(s) 398, 467, 642
BssMI GATC 5 cut(s) 178, 520, 673, 684, 887
BssT1I CCWWGG 1 cut(s) 398
Bst2UI CCWGG 2 cut(s) 550, 644
Bst4CI ACNGT 2 cut(s) 256, 376
Bst6I CTCTTC 1 cut(s) 805
BstAUI TGTACA 1 cut(s) 369
BstBI TTCGAA 1 cut(s) 738
BstDEI CTNAG 3 cut(s) 462, 771, 813
BstF5I GGATG 2 cut(s) 147, 757
BstFNI CGCG 1 cut(s) 600
BstHHI GCGC 1 cut(s) 602
BstKTI GATC 5 cut(s) 181, 523, 676, 687, 890
BstMAI GTCTC 3 cut(s) 60, 101, 241
BstMBI GATC 5 cut(s) 178, 520, 673, 684, 887
BstMWI GCNNNNNNNGC 2 cut(s) 606, 623
BstNI CCWGG 2 cut(s) 550, 644
BstSCI CCNGG 2 cut(s) 548, 642
BstUI CGCG 1 cut(s) 600
BstV1I GCAGC 1 cut(s) 423
BstV2I GAAGAC 2 cut(s) 346, 370
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
BsuRI GGCC 3 cut(s) 41, 456, 538
BtgZI GCGATG 1 cut(s) 662
BtsCI GGATG 2 cut(s) 147, 757
BtsIMutI CAGTG 2 cut(s) 132, 372
CaiI CAGNNNCTG 1 cut(s) 31
CciI TCATGA 1 cut(s) 901
CfoI GCGC 1 cut(s) 602
Cfr13I GGNCC 5 cut(s) 40, 229, 536, 595, 750
CseI GACGC 1 cut(s) 701
CsiI ACCWGGT 1 cut(s) 548
Csp6I GTAC 2 cut(s) 370, 553
CspCI CAANNNNNGTGG 2 cut(s) 178, 213
CviAII CATG 9 cut(s) 335, 389, 430, 440, 506, 566, 688, 878, 902
CviQI GTAC 2 cut(s) 370, 553
DdeI CTNAG 3 cut(s) 462, 771, 813
DpnI GATC 5 cut(s) 180, 522, 675, 686, 889
DpnII GATC 5 cut(s) 178, 520, 673, 684, 887
DraI TTTAAA 1 cut(s) 490
DrdI GACNNNNNNGTC 2 cut(s) 52, 227
DseDI GACNNNNNNGTC 2 cut(s) 52, 227
Eam1104I CTCTTC 1 cut(s) 805
EarI CTCTTC 1 cut(s) 805
EciI GGCGGA 1 cut(s) 711
Eco130I CCWWGG 1 cut(s) 398
Eco47I GGWCC 3 cut(s) 229, 595, 750
EcoRII CCWGG 2 cut(s) 548, 642
EcoT14I CCWWGG 1 cut(s) 398
EcoT22I ATGCAT 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 398
FaeI CATG 9 cut(s) 338, 392, 433, 443, 509, 569, 691, 881, 905
FaqI GGGAC 2 cut(s) 42, 233
FatI CATG 9 cut(s) 334, 388, 429, 439, 505, 565, 687, 877, 901
FbaI TGATCA 1 cut(s) 673
Fnu4HI GCNGC 2 cut(s) 39, 437
FokI GGATG 2 cut(s) 154, 744
Fsp4HI GCNGC 2 cut(s) 39, 437
FspBI CTAG 2 cut(s) 273, 765
GlaI GCGC 1 cut(s) 601
GluI GCNGC 2 cut(s) 39, 437
GsuI CTGGAG 1 cut(s) 223
HaeIII GGCC 3 cut(s) 41, 456, 538
HapII CCGG 2 cut(s) 539, 733
HgaI GACGC 1 cut(s) 701
HhaI GCGC 1 cut(s) 602
Hin1II CATG 9 cut(s) 338, 392, 433, 443, 509, 569, 691, 881, 905
Hin6I GCGC 1 cut(s) 600
HinP1I GCGC 1 cut(s) 600
HinfI GANTC 4 cut(s) 109, 122, 718, 832
HpaII CCGG 2 cut(s) 539, 733
HphI GGTGA 2 cut(s) 644, 893
Hpy166II GTNNAC 2 cut(s) 372, 750
Hpy188I TCNGA 5 cut(s) 62, 292, 673, 717, 774
Hpy188III TCNNGA 2 cut(s) 499, 902
Hpy8I GTNNAC 2 cut(s) 372, 750
Hpy99I CGWCG 1 cut(s) 66
HpyAV CCTTC 1 cut(s) 665
HpyCH4III ACNGT 2 cut(s) 256, 376
HpyCH4IV ACGT 2 cut(s) 64, 76
HpyCH4V TGCA 5 cut(s) 145, 439, 626, 851, 871
HpyF10VI GCNNNNNNNGC 2 cut(s) 606, 623
HpyF3I CTNAG 3 cut(s) 462, 771, 813
HpySE526I ACGT 2 cut(s) 64, 76
Hsp92II CATG 9 cut(s) 338, 392, 433, 443, 509, 569, 691, 881, 905
HspAI GCGC 1 cut(s) 600
Ksp22I TGATCA 1 cut(s) 673
Kzo9I GATC 5 cut(s) 178, 520, 673, 684, 887
Lsp1109I GCAGC 1 cut(s) 423
LweI GCATC 2 cut(s) 132, 154
MabI ACCWGGT 1 cut(s) 548
MaeI CTAG 2 cut(s) 273, 765
MaeII ACGT 2 cut(s) 64, 76
MalI GATC 5 cut(s) 180, 522, 675, 686, 889
MboI GATC 5 cut(s) 178, 520, 673, 684, 887
MboII GAAGA 5 cut(s) 346, 370, 515, 721, 792
MflI RGATCY 1 cut(s) 520
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 3 cut(s) 19, 259, 295
MlyI GAGTC 2 cut(s) 103, 712
MmeI TCCRAC 4 cut(s) 85, 573, 586, 785
MnlI CCTC 9 cut(s) 97, 396, 467, 468, 471, 477, 582, 814, 847
Mph1103I ATGCAT 1 cut(s) 147
MseI TTAA 7 cut(s) 72, 258, 267, 339, 420, 480, 489
MslI CAYNNNNRTG 1 cut(s) 306
MspI CCGG 2 cut(s) 539, 733
MspR9I CCNGG 2 cut(s) 550, 644
MvaI CCWGG 2 cut(s) 550, 644
MvnI CGCG 1 cut(s) 600
MwoI GCNNNNNNNGC 2 cut(s) 606, 623
NdeII GATC 5 cut(s) 178, 520, 673, 684, 887
NlaIII CATG 9 cut(s) 338, 392, 433, 443, 509, 569, 691, 881, 905
NlaIV GGNNCC 1 cut(s) 329
NsiI ATGCAT 1 cut(s) 147
NspV TTCGAA 1 cut(s) 738
PagI TCATGA 1 cut(s) 901
PfeI GAWTC 2 cut(s) 122, 832
PkrI GCNGC 2 cut(s) 40, 438
PleI GAGTC 2 cut(s) 103, 712
PpsI GAGTC 2 cut(s) 103, 712
PshBI ATTAAT 2 cut(s) 267, 480
Psp6I CCWGG 2 cut(s) 548, 642
PspGI CCWGG 2 cut(s) 548, 642
PspN4I GGNNCC 1 cut(s) 329
PspPI GGNCC 5 cut(s) 40, 229, 536, 595, 750
PstNI CAGNNNCTG 1 cut(s) 31
PsuI RGATCY 1 cut(s) 520
RsaI GTAC 2 cut(s) 371, 554
RsaNI GTAC 2 cut(s) 370, 553
RseI CAYNNNNRTG 1 cut(s) 306
SaqAI TTAA 7 cut(s) 72, 258, 267, 339, 420, 480, 489
SatI GCNGC 2 cut(s) 39, 437
Sau3AI GATC 5 cut(s) 178, 520, 673, 684, 887
Sau96I GGNCC 5 cut(s) 40, 229, 536, 595, 750
SchI GAGTC 2 cut(s) 103, 712
ScrFI CCNGG 2 cut(s) 550, 644
SduI GDGCHC 1 cut(s) 132
SetI ASST 9 cut(s) 67, 79, 400, 516, 551, 576, 593, 648, 657
SexAI ACCWGGT 1 cut(s) 548
SfaNI GCATC 2 cut(s) 132, 154
SfuI TTCGAA 1 cut(s) 738
SinI GGWCC 3 cut(s) 229, 595, 750
SmiMI CAYNNNNRTG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SpeI ACTAGT 1 cut(s) 272
Sse9I AATT 3 cut(s) 19, 259, 295
SsiI CCGC 3 cut(s) 38, 598, 722
SspMI CTAG 2 cut(s) 273, 765
StyD4I CCNGG 2 cut(s) 548, 642
StyI CCWWGG 1 cut(s) 398
TaaI ACNGT 2 cut(s) 256, 376
TaiI ACGT 2 cut(s) 67, 79
TaqI TCGA 1 cut(s) 738
TaqII GACCGA 2 cut(s) 217, 340
TasI AATT 3 cut(s) 19, 259, 295
TatI WGTACW 1 cut(s) 369
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 2 cut(s) 122, 832
Tru1I TTAA 7 cut(s) 72, 258, 267, 339, 420, 480, 489
Tru9I TTAA 7 cut(s) 72, 258, 267, 339, 420, 480, 489
TscAI CASTG 2 cut(s) 132, 379
TseI GCWGC 1 cut(s) 436
TspDTI ATGAA 1 cut(s) 456
TspGWI ACGGA 1 cut(s) 533
TspRI CASTG 2 cut(s) 132, 379
VpaK11BI GGWCC 3 cut(s) 229, 595, 750
VspI ATTAAT 2 cut(s) 267, 480
XapI RAATTY 1 cut(s) 295
XspI CTAG 2 cut(s) 273, 765
Zsp2I ATGCAT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.