ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 4 - 226 | 6.8e-14 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 52, 227 |
| AccII | CGCG | 1 cut(s) | 600 |
| AciI | CCGC | 3 cut(s) | 38, 598, 722 |
| AclWI | GGATC | 2 cut(s) | 173, 528 |
| AcsI | RAATTY | 1 cut(s) | 295 |
| AfaI | GTAC | 2 cut(s) | 371, 554 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 67, 517, 665, 814 |
| AgsI | TTSAA | 1 cut(s) | 533 |
| AhlI | ACTAGT | 1 cut(s) | 272 |
| AjnI | CCWGG | 2 cut(s) | 548, 642 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 788, 820 |
| Alw21I | GWGCWC | 1 cut(s) | 132 |
| Alw26I | GTCTC | 3 cut(s) | 60, 101, 241 |
| AlwI | GGATC | 2 cut(s) | 173, 528 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 31 |
| AoxI | GGCC | 3 cut(s) | 39, 454, 536 |
| ApeKI | GCWGC | 1 cut(s) | 436 |
| ApoI | RAATTY | 1 cut(s) | 295 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 152, 184, 587, 619 |
| AseI | ATTAAT | 2 cut(s) | 267, 480 |
| AspLEI | GCGC | 1 cut(s) | 602 |
| AspS9I | GGNCC | 5 cut(s) | 40, 229, 536, 595, 750 |
| AsuHPI | GGTGA | 2 cut(s) | 644, 893 |
| AsuII | TTCGAA | 1 cut(s) | 738 |
| AvaII | GGWCC | 3 cut(s) | 229, 595, 750 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 362, 394 |
| BbsI | GAAGAC | 2 cut(s) | 346, 370 |
| Bbv12I | GWGCWC | 1 cut(s) | 132 |
| BbvCI | CCTCAGC | 1 cut(s) | 462 |
| BbvI | GCAGC | 1 cut(s) | 423 |
| BccI | CCATC | 1 cut(s) | 817 |
| BciT130I | CCWGG | 2 cut(s) | 550, 644 |
| BclI | TGATCA | 1 cut(s) | 673 |
| BcoDI | GTCTC | 3 cut(s) | 60, 101, 241 |
| BcuI | ACTAGT | 1 cut(s) | 272 |
| BfaI | CTAG | 2 cut(s) | 273, 765 |
| BisI | GCNGC | 2 cut(s) | 39, 437 |
| BlsI | GCNGC | 2 cut(s) | 40, 438 |
| Bme1390I | CCNGG | 2 cut(s) | 550, 644 |
| Bme18I | GGWCC | 3 cut(s) | 229, 595, 750 |
| BmgT120I | GGNCC | 5 cut(s) | 40, 229, 536, 595, 750 |
| BmiI | GGNNCC | 1 cut(s) | 329 |
| BmrFI | CCNGG | 2 cut(s) | 550, 644 |
| BmrI | ACTGGG | 1 cut(s) | 41 |
| BmsI | GCATC | 2 cut(s) | 132, 154 |
| BmuI | ACTGGG | 1 cut(s) | 41 |
| BpiI | GAAGAC | 2 cut(s) | 346, 370 |
| BpmI | CTGGAG | 1 cut(s) | 223 |
| Bpu10I | CCTNAGC | 1 cut(s) | 462 |
| Bpu14I | TTCGAA | 1 cut(s) | 738 |
| BpuEI | CTTGAG | 1 cut(s) | 116 |
| BsaJI | CCNNGG | 3 cut(s) | 398, 467, 642 |
| BsaWI | WCCGGW | 1 cut(s) | 732 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 788, 818 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 67, 517, 665, 814 |
| Bse1I | ACTGG | 5 cut(s) | 36, 52, 240, 794, 830 |
| BseBI | CCWGG | 2 cut(s) | 550, 644 |
| BseDI | CCNNGG | 3 cut(s) | 398, 467, 642 |
| BseGI | GGATG | 2 cut(s) | 147, 757 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 67, 517, 665, 814 |
| BseMII | CTCAG | 3 cut(s) | 476, 785, 827 |
| BseNI | ACTGG | 5 cut(s) | 36, 52, 240, 794, 830 |
| BseXI | GCAGC | 1 cut(s) | 423 |
| Bsh1236I | CGCG | 1 cut(s) | 600 |
| BshFI | GGCC | 3 cut(s) | 41, 456, 538 |
| BsiHKAI | GWGCWC | 1 cut(s) | 132 |
| BsiSI | CCGG | 2 cut(s) | 539, 733 |
| BslFI | GGGAC | 2 cut(s) | 42, 233 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 67, 517, 665, 814 |
| BsmAI | GTCTC | 3 cut(s) | 60, 101, 241 |
| BsmFI | GGGAC | 2 cut(s) | 42, 233 |
| BsnI | GGCC | 3 cut(s) | 41, 456, 538 |
| Bsp119I | TTCGAA | 1 cut(s) | 738 |
| Bsp1286I | GDGCHC | 1 cut(s) | 132 |
| Bsp1407I | TGTACA | 1 cut(s) | 369 |
| Bsp143I | GATC | 5 cut(s) | 178, 520, 673, 684, 887 |
| BspACI | CCGC | 3 cut(s) | 38, 598, 722 |
| BspANI | GGCC | 3 cut(s) | 41, 456, 538 |
| BspCNI | CTCAG | 3 cut(s) | 475, 784, 826 |
| BspFNI | CGCG | 1 cut(s) | 600 |
| BspHI | TCATGA | 1 cut(s) | 901 |
| BspLI | GGNNCC | 1 cut(s) | 329 |
| BspPI | GGATC | 2 cut(s) | 173, 528 |
| BspT104I | TTCGAA | 1 cut(s) | 738 |
| BsrGI | TGTACA | 1 cut(s) | 369 |
| BsrI | ACTGG | 5 cut(s) | 36, 52, 240, 794, 830 |
| BssECI | CCNNGG | 3 cut(s) | 398, 467, 642 |
| BssMI | GATC | 5 cut(s) | 178, 520, 673, 684, 887 |
| BssT1I | CCWWGG | 1 cut(s) | 398 |
| Bst2UI | CCWGG | 2 cut(s) | 550, 644 |
| Bst4CI | ACNGT | 2 cut(s) | 256, 376 |
| Bst6I | CTCTTC | 1 cut(s) | 805 |
| BstAUI | TGTACA | 1 cut(s) | 369 |
| BstBI | TTCGAA | 1 cut(s) | 738 |
| BstDEI | CTNAG | 3 cut(s) | 462, 771, 813 |
| BstF5I | GGATG | 2 cut(s) | 147, 757 |
| BstFNI | CGCG | 1 cut(s) | 600 |
| BstHHI | GCGC | 1 cut(s) | 602 |
| BstKTI | GATC | 5 cut(s) | 181, 523, 676, 687, 890 |
| BstMAI | GTCTC | 3 cut(s) | 60, 101, 241 |
| BstMBI | GATC | 5 cut(s) | 178, 520, 673, 684, 887 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 606, 623 |
| BstNI | CCWGG | 2 cut(s) | 550, 644 |
| BstSCI | CCNGG | 2 cut(s) | 548, 642 |
| BstUI | CGCG | 1 cut(s) | 600 |
| BstV1I | GCAGC | 1 cut(s) | 423 |
| BstV2I | GAAGAC | 2 cut(s) | 346, 370 |
| BstX2I | RGATCY | 1 cut(s) | 520 |
| BstYI | RGATCY | 1 cut(s) | 520 |
| BsuRI | GGCC | 3 cut(s) | 41, 456, 538 |
| BtgZI | GCGATG | 1 cut(s) | 662 |
| BtsCI | GGATG | 2 cut(s) | 147, 757 |
| BtsIMutI | CAGTG | 2 cut(s) | 132, 372 |
| CaiI | CAGNNNCTG | 1 cut(s) | 31 |
| CciI | TCATGA | 1 cut(s) | 901 |
| CfoI | GCGC | 1 cut(s) | 602 |
| Cfr13I | GGNCC | 5 cut(s) | 40, 229, 536, 595, 750 |
| CseI | GACGC | 1 cut(s) | 701 |
| CsiI | ACCWGGT | 1 cut(s) | 548 |
| Csp6I | GTAC | 2 cut(s) | 370, 553 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 178, 213 |
| CviAII | CATG | 9 cut(s) | 335, 389, 430, 440, 506, 566, 688, 878, 902 |
| CviQI | GTAC | 2 cut(s) | 370, 553 |
| DdeI | CTNAG | 3 cut(s) | 462, 771, 813 |
| DpnI | GATC | 5 cut(s) | 180, 522, 675, 686, 889 |
| DpnII | GATC | 5 cut(s) | 178, 520, 673, 684, 887 |
| DraI | TTTAAA | 1 cut(s) | 490 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 52, 227 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 52, 227 |
| Eam1104I | CTCTTC | 1 cut(s) | 805 |
| EarI | CTCTTC | 1 cut(s) | 805 |
| EciI | GGCGGA | 1 cut(s) | 711 |
| Eco130I | CCWWGG | 1 cut(s) | 398 |
| Eco47I | GGWCC | 3 cut(s) | 229, 595, 750 |
| EcoRII | CCWGG | 2 cut(s) | 548, 642 |
| EcoT14I | CCWWGG | 1 cut(s) | 398 |
| EcoT22I | ATGCAT | 1 cut(s) | 147 |
| ErhI | CCWWGG | 1 cut(s) | 398 |
| FaeI | CATG | 9 cut(s) | 338, 392, 433, 443, 509, 569, 691, 881, 905 |
| FaqI | GGGAC | 2 cut(s) | 42, 233 |
| FatI | CATG | 9 cut(s) | 334, 388, 429, 439, 505, 565, 687, 877, 901 |
| FbaI | TGATCA | 1 cut(s) | 673 |
| Fnu4HI | GCNGC | 2 cut(s) | 39, 437 |
| FokI | GGATG | 2 cut(s) | 154, 744 |
| Fsp4HI | GCNGC | 2 cut(s) | 39, 437 |
| FspBI | CTAG | 2 cut(s) | 273, 765 |
| GlaI | GCGC | 1 cut(s) | 601 |
| GluI | GCNGC | 2 cut(s) | 39, 437 |
| GsuI | CTGGAG | 1 cut(s) | 223 |
| HaeIII | GGCC | 3 cut(s) | 41, 456, 538 |
| HapII | CCGG | 2 cut(s) | 539, 733 |
| HgaI | GACGC | 1 cut(s) | 701 |
| HhaI | GCGC | 1 cut(s) | 602 |
| Hin1II | CATG | 9 cut(s) | 338, 392, 433, 443, 509, 569, 691, 881, 905 |
| Hin6I | GCGC | 1 cut(s) | 600 |
| HinP1I | GCGC | 1 cut(s) | 600 |
| HinfI | GANTC | 4 cut(s) | 109, 122, 718, 832 |
| HpaII | CCGG | 2 cut(s) | 539, 733 |
| HphI | GGTGA | 2 cut(s) | 644, 893 |
| Hpy166II | GTNNAC | 2 cut(s) | 372, 750 |
| Hpy188I | TCNGA | 5 cut(s) | 62, 292, 673, 717, 774 |
| Hpy188III | TCNNGA | 2 cut(s) | 499, 902 |
| Hpy8I | GTNNAC | 2 cut(s) | 372, 750 |
| Hpy99I | CGWCG | 1 cut(s) | 66 |
| HpyAV | CCTTC | 1 cut(s) | 665 |
| HpyCH4III | ACNGT | 2 cut(s) | 256, 376 |
| HpyCH4IV | ACGT | 2 cut(s) | 64, 76 |
| HpyCH4V | TGCA | 5 cut(s) | 145, 439, 626, 851, 871 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 606, 623 |
| HpyF3I | CTNAG | 3 cut(s) | 462, 771, 813 |
| HpySE526I | ACGT | 2 cut(s) | 64, 76 |
| Hsp92II | CATG | 9 cut(s) | 338, 392, 433, 443, 509, 569, 691, 881, 905 |
| HspAI | GCGC | 1 cut(s) | 600 |
| Ksp22I | TGATCA | 1 cut(s) | 673 |
| Kzo9I | GATC | 5 cut(s) | 178, 520, 673, 684, 887 |
| Lsp1109I | GCAGC | 1 cut(s) | 423 |
| LweI | GCATC | 2 cut(s) | 132, 154 |
| MabI | ACCWGGT | 1 cut(s) | 548 |
| MaeI | CTAG | 2 cut(s) | 273, 765 |
| MaeII | ACGT | 2 cut(s) | 64, 76 |
| MalI | GATC | 5 cut(s) | 180, 522, 675, 686, 889 |
| MboI | GATC | 5 cut(s) | 178, 520, 673, 684, 887 |
| MboII | GAAGA | 5 cut(s) | 346, 370, 515, 721, 792 |
| MflI | RGATCY | 1 cut(s) | 520 |
| MhlI | GDGCHC | 1 cut(s) | 132 |
| MluCI | AATT | 3 cut(s) | 19, 259, 295 |
| MlyI | GAGTC | 2 cut(s) | 103, 712 |
| MmeI | TCCRAC | 4 cut(s) | 85, 573, 586, 785 |
| MnlI | CCTC | 9 cut(s) | 97, 396, 467, 468, 471, 477, 582, 814, 847 |
| Mph1103I | ATGCAT | 1 cut(s) | 147 |
| MseI | TTAA | 7 cut(s) | 72, 258, 267, 339, 420, 480, 489 |
| MslI | CAYNNNNRTG | 1 cut(s) | 306 |
| MspI | CCGG | 2 cut(s) | 539, 733 |
| MspR9I | CCNGG | 2 cut(s) | 550, 644 |
| MvaI | CCWGG | 2 cut(s) | 550, 644 |
| MvnI | CGCG | 1 cut(s) | 600 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 606, 623 |
| NdeII | GATC | 5 cut(s) | 178, 520, 673, 684, 887 |
| NlaIII | CATG | 9 cut(s) | 338, 392, 433, 443, 509, 569, 691, 881, 905 |
| NlaIV | GGNNCC | 1 cut(s) | 329 |
| NsiI | ATGCAT | 1 cut(s) | 147 |
| NspV | TTCGAA | 1 cut(s) | 738 |
| PagI | TCATGA | 1 cut(s) | 901 |
| PfeI | GAWTC | 2 cut(s) | 122, 832 |
| PkrI | GCNGC | 2 cut(s) | 40, 438 |
| PleI | GAGTC | 2 cut(s) | 103, 712 |
| PpsI | GAGTC | 2 cut(s) | 103, 712 |
| PshBI | ATTAAT | 2 cut(s) | 267, 480 |
| Psp6I | CCWGG | 2 cut(s) | 548, 642 |
| PspGI | CCWGG | 2 cut(s) | 548, 642 |
| PspN4I | GGNNCC | 1 cut(s) | 329 |
| PspPI | GGNCC | 5 cut(s) | 40, 229, 536, 595, 750 |
| PstNI | CAGNNNCTG | 1 cut(s) | 31 |
| PsuI | RGATCY | 1 cut(s) | 520 |
| RsaI | GTAC | 2 cut(s) | 371, 554 |
| RsaNI | GTAC | 2 cut(s) | 370, 553 |
| RseI | CAYNNNNRTG | 1 cut(s) | 306 |
| SaqAI | TTAA | 7 cut(s) | 72, 258, 267, 339, 420, 480, 489 |
| SatI | GCNGC | 2 cut(s) | 39, 437 |
| Sau3AI | GATC | 5 cut(s) | 178, 520, 673, 684, 887 |
| Sau96I | GGNCC | 5 cut(s) | 40, 229, 536, 595, 750 |
| SchI | GAGTC | 2 cut(s) | 103, 712 |
| ScrFI | CCNGG | 2 cut(s) | 550, 644 |
| SduI | GDGCHC | 1 cut(s) | 132 |
| SetI | ASST | 9 cut(s) | 67, 79, 400, 516, 551, 576, 593, 648, 657 |
| SexAI | ACCWGGT | 1 cut(s) | 548 |
| SfaNI | GCATC | 2 cut(s) | 132, 154 |
| SfuI | TTCGAA | 1 cut(s) | 738 |
| SinI | GGWCC | 3 cut(s) | 229, 595, 750 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 306 |
| SmlI | CTYRAG | 1 cut(s) | 131 |
| SmoI | CTYRAG | 1 cut(s) | 131 |
| SpeI | ACTAGT | 1 cut(s) | 272 |
| Sse9I | AATT | 3 cut(s) | 19, 259, 295 |
| SsiI | CCGC | 3 cut(s) | 38, 598, 722 |
| SspMI | CTAG | 2 cut(s) | 273, 765 |
| StyD4I | CCNGG | 2 cut(s) | 548, 642 |
| StyI | CCWWGG | 1 cut(s) | 398 |
| TaaI | ACNGT | 2 cut(s) | 256, 376 |
| TaiI | ACGT | 2 cut(s) | 67, 79 |
| TaqI | TCGA | 1 cut(s) | 738 |
| TaqII | GACCGA | 2 cut(s) | 217, 340 |
| TasI | AATT | 3 cut(s) | 19, 259, 295 |
| TatI | WGTACW | 1 cut(s) | 369 |
| TauI | GCSGC | 1 cut(s) | 41 |
| TfiI | GAWTC | 2 cut(s) | 122, 832 |
| Tru1I | TTAA | 7 cut(s) | 72, 258, 267, 339, 420, 480, 489 |
| Tru9I | TTAA | 7 cut(s) | 72, 258, 267, 339, 420, 480, 489 |
| TscAI | CASTG | 2 cut(s) | 132, 379 |
| TseI | GCWGC | 1 cut(s) | 436 |
| TspDTI | ATGAA | 1 cut(s) | 456 |
| TspGWI | ACGGA | 1 cut(s) | 533 |
| TspRI | CASTG | 2 cut(s) | 132, 379 |
| VpaK11BI | GGWCC | 3 cut(s) | 229, 595, 750 |
| VspI | ATTAAT | 2 cut(s) | 267, 480 |
| XapI | RAATTY | 1 cut(s) | 295 |
| XspI | CTAG | 2 cut(s) | 273, 765 |
| Zsp2I | ATGCAT | 1 cut(s) | 147 |