Rh2DG388000

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000147
Physical Location & Seq
Forward (+)
56175882 .. 56176361
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG388000.1

Sequence Viewer

Length: 480 bp
ATGATCATCGCCCTATTATGCTGGGCTTACTTCCATCTGAAGCCCGATCTCCTCAAGTTTGAACAAATGTGGAGTACTAAATCTGATTGTCAGGATGTAATTCGGCGAAGTTGGGATTATTTTCCGGGCCCCTCTCCTGCTTCTTGTTGGGAGAAGAATCTTGGCAAATGTCGTACTTCTCTTACTGCCTGGTCTAAGAGAACGTTTCCCAACACTAGAGCTCAGATTAATGTTTTGCAGTCAGAATTGCAGTCTCTCCAACAAAGCACTCTTCCAGATTCTATGGTTCATATCTCTCGAGTTACAAATCAGATCGCAGACTTGTGGAAGCTAGAGGAGATGTATTGGCAACAACGATCTCGTATTAATTGGCTCTCTTTGGGAGACGATAACACTGCTTTCTTCCACCAGACTACTCTTCAGCGCCCACAATATAACAAGATTCTACGATTGAAAAATTCTTATGGTAATTATCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

159

Amino Acids

18.87

Weight (kDa)

9.27

Isoelectric Point (pI)

64.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 203
AcsI RAATTY 1 cut(s) 457
AcuI CTGAAG 2 cut(s) 59, 404
AfaI GTAC 2 cut(s) 76, 175
AgsI TTSAA 2 cut(s) 62, 454
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 2 cut(s) 221, 331
AluI AGCT 2 cut(s) 221, 331
Alw21I GWGCWC 1 cut(s) 223
Alw26I GTCTC 2 cut(s) 258, 378
Ama87I CYCGRG 1 cut(s) 297
AoxI GGCC 1 cut(s) 127
ApaI GGGCCC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 457
AseI ATTAAT 2 cut(s) 228, 366
AspLEI GCGC 1 cut(s) 426
AspS9I GGNCC 2 cut(s) 127, 128
AsuC2I CCSGG 1 cut(s) 126
AvaI CYCGRG 1 cut(s) 297
BaeGI GKGCMC 1 cut(s) 131
BanII GRGCYC 2 cut(s) 131, 223
Bbv12I GWGCWC 1 cut(s) 223
BccI CCATC 1 cut(s) 42
BcgI CGANNNNNNTGC 2 cut(s) 377, 411
BciT130I CCWGG 1 cut(s) 190
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 126
BcoDI GTCTC 2 cut(s) 258, 378
BfaI CTAG 2 cut(s) 216, 332
BfoI RGCGCY 1 cut(s) 427
BmcAI AGTACT 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 126, 190
BmeT110I CYCGRG 1 cut(s) 297
BmgT120I GGNCC 2 cut(s) 127, 128
BmiI GGNNCC 2 cut(s) 129, 130
BmrFI CCNGG 2 cut(s) 126, 190
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 126
BseBI CCWGG 1 cut(s) 190
BseGI GGATG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 236
BseRI GAGGAG 2 cut(s) 41, 350
BseSI GKGCMC 1 cut(s) 131
BseYI CCCAGC 1 cut(s) 21
BshFI GGCC 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 223
BsiHKCI CYCGRG 1 cut(s) 297
BsiSI CCGG 1 cut(s) 125
BsmAI GTCTC 2 cut(s) 258, 378
BsmBI CGTCTC 1 cut(s) 378
BsnI GGCC 1 cut(s) 129
BsoBI CYCGRG 1 cut(s) 297
Bsp120I GGGCCC 1 cut(s) 127
Bsp1286I GDGCHC 2 cut(s) 131, 223
Bsp143I GATC 4 cut(s) 3, 46, 312, 356
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 235
BspLI GGNNCC 2 cut(s) 129, 130
BssMI GATC 4 cut(s) 3, 46, 312, 356
Bst2UI CCWGG 1 cut(s) 190
Bst6I CTCTTC 2 cut(s) 276, 423
BstDEI CTNAG 2 cut(s) 195, 222
BstF5I GGATG 1 cut(s) 100
BstH2I RGCGCY 1 cut(s) 427
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 4 cut(s) 6, 49, 315, 359
BstMAI GTCTC 2 cut(s) 258, 378
BstMBI GATC 4 cut(s) 3, 46, 312, 356
BstNI CCWGG 1 cut(s) 190
BstSCI CCNGG 2 cut(s) 124, 188
BstSLI GKGCMC 1 cut(s) 131
BsuRI GGCC 1 cut(s) 129
BtsCI GGATG 1 cut(s) 100
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 1 cut(s) 393
CfoI GCGC 1 cut(s) 426
Cfr13I GGNCC 2 cut(s) 127, 128
Csp6I GTAC 2 cut(s) 75, 174
CviJI RGCY 6 cut(s) 26, 43, 129, 221, 331, 373
CviKI_1 RGCY 6 cut(s) 26, 43, 129, 221, 331, 373
CviQI GTAC 2 cut(s) 75, 174
DdeI CTNAG 2 cut(s) 195, 222
DpnI GATC 4 cut(s) 5, 48, 314, 358
DpnII GATC 4 cut(s) 3, 46, 312, 356
Eam1104I CTCTTC 2 cut(s) 276, 423
EarI CTCTTC 2 cut(s) 276, 423
Ecl136II GAGCTC 1 cut(s) 221
Eco24I GRGCYC 2 cut(s) 131, 223
Eco53kI GAGCTC 1 cut(s) 221
Eco57I CTGAAG 2 cut(s) 59, 404
Eco88I CYCGRG 1 cut(s) 297
EcoICRI GAGCTC 1 cut(s) 221
EcoO109I RGGNCCY 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 188
EcoT38I GRGCYC 2 cut(s) 131, 223
Esp3I CGTCTC 1 cut(s) 378
FaiI YATR 5 cut(s) 19, 284, 291, 435, 465
FbaI TGATCA 1 cut(s) 3
FokI GGATG 1 cut(s) 107
FriOI GRGCYC 2 cut(s) 131, 223
FspBI CTAG 2 cut(s) 216, 332
GlaI GCGC 1 cut(s) 425
GsaI CCCAGC 1 cut(s) 25
HaeII RGCGCY 1 cut(s) 427
HaeIII GGCC 1 cut(s) 129
HapII CCGG 1 cut(s) 125
HhaI GCGC 1 cut(s) 426
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HinfI GANTC 3 cut(s) 157, 278, 442
HpaII CCGG 1 cut(s) 125
Hpy188I TCNGA 5 cut(s) 39, 85, 225, 244, 312
Hpy188III TCNNGA 3 cut(s) 92, 275, 297
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 2 cut(s) 238, 250
HpyF3I CTNAG 2 cut(s) 195, 222
HpySE526I ACGT 1 cut(s) 203
HspAI GCGC 1 cut(s) 424
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 46, 312, 356
LpnPI CCDG 8 cut(s) 7, 77, 138, 150, 175, 202, 288, 422
MaeI CTAG 2 cut(s) 216, 332
MaeII ACGT 1 cut(s) 203
MaeIII GTNAC 1 cut(s) 301
MalI GATC 4 cut(s) 5, 48, 314, 358
MboI GATC 4 cut(s) 3, 46, 312, 356
MboII GAAGA 4 cut(s) 166, 263, 394, 410
MhlI GDGCHC 2 cut(s) 131, 223
MluCI AATT 5 cut(s) 99, 245, 367, 457, 469
MmeI TCCRAC 1 cut(s) 283
MnlI CCTC 3 cut(s) 62, 142, 328
MseI TTAA 2 cut(s) 228, 366
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 2 cut(s) 126, 190
MvaI CCWGG 1 cut(s) 190
NciI CCSGG 1 cut(s) 126
NdeII GATC 4 cut(s) 3, 46, 312, 356
NlaIV GGNNCC 2 cut(s) 129, 130
PaeR7I CTCGAG 1 cut(s) 297
PfeI GAWTC 3 cut(s) 157, 278, 442
PshBI ATTAAT 2 cut(s) 228, 366
Psp124BI GAGCTC 1 cut(s) 223
Psp1406I AACGTT 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 188
PspFI CCCAGC 1 cut(s) 21
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 2 cut(s) 129, 130
PspOMI GGGCCC 1 cut(s) 127
PspPI GGNCC 2 cut(s) 127, 128
RsaI GTAC 2 cut(s) 76, 175
RsaNI GTAC 2 cut(s) 75, 174
SacI GAGCTC 1 cut(s) 223
SaqAI TTAA 2 cut(s) 228, 366
Sau3AI GATC 4 cut(s) 3, 46, 312, 356
Sau96I GGNCC 2 cut(s) 127, 128
ScaI AGTACT 1 cut(s) 76
ScrFI CCNGG 2 cut(s) 126, 190
SduI GDGCHC 2 cut(s) 131, 223
SetI ASST 3 cut(s) 206, 223, 333
Sfr274I CTCGAG 1 cut(s) 297
SlaI CTCGAG 1 cut(s) 297
SmlI CTYRAG 2 cut(s) 53, 297
SmoI CTYRAG 2 cut(s) 53, 297
Sse9I AATT 5 cut(s) 99, 245, 367, 457, 469
SspMI CTAG 2 cut(s) 216, 332
SstI GAGCTC 1 cut(s) 223
StyD4I CCNGG 2 cut(s) 124, 188
TaiI ACGT 1 cut(s) 206
TaqI TCGA 1 cut(s) 298
TasI AATT 5 cut(s) 99, 245, 367, 457, 469
TatI WGTACW 1 cut(s) 74
TfiI GAWTC 3 cut(s) 157, 278, 442
Tru1I TTAA 2 cut(s) 228, 366
Tru9I TTAA 2 cut(s) 228, 366
TscAI CASTG 1 cut(s) 400
TspDTI ATGAA 1 cut(s) 278
TspRI CASTG 1 cut(s) 400
VspI ATTAAT 2 cut(s) 228, 366
XapI RAATTY 1 cut(s) 457
XhoI CTCGAG 1 cut(s) 297
XspI CTAG 2 cut(s) 216, 332
ZrmI AGTACT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.