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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 559 |
| Acc65I | GGTACC | 2 cut(s) | 167, 464 |
| AccB1I | GGYRCC | 2 cut(s) | 167, 464 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 68 |
| AccBSI | CCGCTC | 2 cut(s) | 193, 446 |
| AciI | CCGC | 5 cut(s) | 193, 236, 285, 444, 827 |
| AclWI | GGATC | 3 cut(s) | 686, 710, 767 |
| AcsI | RAATTY | 1 cut(s) | 955 |
| AcuI | CTGAAG | 1 cut(s) | 785 |
| AcyI | GRCGYC | 1 cut(s) | 628 |
| AfaI | GTAC | 2 cut(s) | 169, 466 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 68, 223, 512, 719 |
| AgsI | TTSAA | 6 cut(s) | 91, 527, 701, 788, 808, 908 |
| AhlI | ACTAGT | 1 cut(s) | 263 |
| AjnI | CCWGG | 2 cut(s) | 631, 718 |
| AluBI | AGCT | 3 cut(s) | 585, 665, 680 |
| AluI | AGCT | 3 cut(s) | 585, 665, 680 |
| Alw26I | GTCTC | 1 cut(s) | 301 |
| AlwI | GGATC | 3 cut(s) | 686, 710, 767 |
| Ama87I | CYCGRG | 3 cut(s) | 116, 450, 510 |
| AoxI | GGCC | 3 cut(s) | 70, 424, 493 |
| ApeKI | GCWGC | 1 cut(s) | 565 |
| ApoI | RAATTY | 1 cut(s) | 955 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 947, 979 |
| Asp718I | GGTACC | 2 cut(s) | 167, 464 |
| AspS9I | GGNCC | 6 cut(s) | 71, 328, 424, 494, 515, 571 |
| AsuHPI | GGTGA | 2 cut(s) | 89, 383 |
| AsuNHI | GCTAGC | 1 cut(s) | 128 |
| AvaI | CYCGRG | 3 cut(s) | 116, 450, 510 |
| AvaII | GGWCC | 3 cut(s) | 328, 515, 571 |
| AxyI | CCTNAGG | 1 cut(s) | 765 |
| BanI | GGYRCC | 2 cut(s) | 167, 464 |
| BanII | GRGCYC | 1 cut(s) | 403 |
| BbsI | GAAGAC | 2 cut(s) | 469, 894 |
| BbvI | GCAGC | 1 cut(s) | 577 |
| BccI | CCATC | 2 cut(s) | 582, 762 |
| BceAI | ACGGC | 1 cut(s) | 240 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 557, 591 |
| BciT130I | CCWGG | 2 cut(s) | 633, 720 |
| BcoDI | GTCTC | 1 cut(s) | 301 |
| BcuI | ACTAGT | 1 cut(s) | 263 |
| BfaI | CTAG | 6 cut(s) | 129, 264, 302, 624, 824, 1008 |
| BfuAI | ACCTGC | 1 cut(s) | 559 |
| BisI | GCNGC | 1 cut(s) | 566 |
| BlsI | GCNGC | 1 cut(s) | 567 |
| Bme1390I | CCNGG | 2 cut(s) | 633, 720 |
| Bme18I | GGWCC | 3 cut(s) | 328, 515, 571 |
| BmeT110I | CYCGRG | 3 cut(s) | 116, 450, 510 |
| BmgT120I | GGNCC | 6 cut(s) | 71, 328, 424, 494, 515, 571 |
| BmiI | GGNNCC | 5 cut(s) | 73, 169, 228, 466, 517 |
| BmrFI | CCNGG | 2 cut(s) | 633, 720 |
| BmrI | ACTGGG | 1 cut(s) | 453 |
| BmsI | GCATC | 2 cut(s) | 73, 750 |
| BmtI | GCTAGC | 1 cut(s) | 132 |
| BmuI | ACTGGG | 1 cut(s) | 453 |
| BpiI | GAAGAC | 2 cut(s) | 469, 894 |
| BpuEI | CTTGAG | 1 cut(s) | 660 |
| BsaBI | GATNNNNATC | 1 cut(s) | 339 |
| BsaHI | GRCGYC | 1 cut(s) | 628 |
| BsaJI | CCNNGG | 2 cut(s) | 67, 631 |
| BsaWI | WCCGGW | 1 cut(s) | 694 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 214, 244 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 68, 223, 512, 719 |
| Bse1I | ACTGG | 4 cut(s) | 62, 459, 477, 566 |
| Bse21I | CCTNAGG | 1 cut(s) | 765 |
| Bse3DI | GCAATG | 1 cut(s) | 949 |
| Bse8I | GATNNNNATC | 1 cut(s) | 339 |
| BseBI | CCWGG | 2 cut(s) | 633, 720 |
| BseDI | CCNNGG | 2 cut(s) | 67, 631 |
| BseGI | GGATG | 2 cut(s) | 313, 655 |
| BseJI | GATNNNNATC | 1 cut(s) | 339 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 68, 223, 512, 719 |
| BseMI | GCAATG | 1 cut(s) | 949 |
| BseMII | CTCAG | 4 cut(s) | 756, 828, 951, 1013 |
| BseNI | ACTGG | 4 cut(s) | 62, 459, 477, 566 |
| BseRI | GAGGAG | 2 cut(s) | 219, 438 |
| BseXI | GCAGC | 1 cut(s) | 577 |
| BshFI | GGCC | 3 cut(s) | 72, 426, 495 |
| BshNI | GGYRCC | 2 cut(s) | 167, 464 |
| BsiHKCI | CYCGRG | 3 cut(s) | 116, 450, 510 |
| BsiSI | CCGG | 1 cut(s) | 695 |
| BslFI | GGGAC | 3 cut(s) | 134, 440, 695 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 68, 223, 512, 719 |
| BsmAI | GTCTC | 1 cut(s) | 301 |
| BsmFI | GGGAC | 3 cut(s) | 134, 440, 695 |
| BsmI | GAATGC | 2 cut(s) | 553, 820 |
| BsnI | GGCC | 3 cut(s) | 72, 426, 495 |
| BsoBI | CYCGRG | 3 cut(s) | 116, 450, 510 |
| Bsp1286I | GDGCHC | 1 cut(s) | 403 |
| Bsp143I | GATC | 3 cut(s) | 691, 715, 772 |
| Bsp19I | CCATGG | 1 cut(s) | 67 |
| BspACI | CCGC | 5 cut(s) | 193, 236, 285, 444, 827 |
| BspANI | GGCC | 3 cut(s) | 72, 426, 495 |
| BspCNI | CTCAG | 4 cut(s) | 757, 829, 952, 1012 |
| BspLI | GGNNCC | 5 cut(s) | 73, 169, 228, 466, 517 |
| BspMI | ACCTGC | 1 cut(s) | 559 |
| BspOI | GCTAGC | 1 cut(s) | 132 |
| BspPI | GGATC | 3 cut(s) | 686, 710, 767 |
| BspT107I | GGYRCC | 2 cut(s) | 167, 464 |
| BsrBI | CCGCTC | 2 cut(s) | 193, 446 |
| BsrDI | GCAATG | 1 cut(s) | 949 |
| BsrI | ACTGG | 4 cut(s) | 62, 459, 477, 566 |
| BssECI | CCNNGG | 2 cut(s) | 67, 631 |
| BssMI | GATC | 3 cut(s) | 691, 715, 772 |
| BssNI | GRCGYC | 1 cut(s) | 628 |
| BssT1I | CCWWGG | 1 cut(s) | 67 |
| Bst2UI | CCWGG | 2 cut(s) | 633, 720 |
| Bst4CI | ACNGT | 2 cut(s) | 125, 247 |
| Bst6I | CTCTTC | 1 cut(s) | 940 |
| BstACI | GRCGYC | 1 cut(s) | 628 |
| BstC8I | GCNNGC | 1 cut(s) | 130 |
| BstDEI | CTNAG | 5 cut(s) | 347, 765, 837, 960, 999 |
| BstDSI | CCRYGG | 1 cut(s) | 67 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 510, 717 |
| BstF5I | GGATG | 2 cut(s) | 313, 655 |
| BstKTI | GATC | 3 cut(s) | 694, 718, 775 |
| BstMAI | GTCTC | 1 cut(s) | 301 |
| BstMBI | GATC | 3 cut(s) | 691, 715, 772 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 824 |
| BstNI | CCWGG | 2 cut(s) | 633, 720 |
| BstSCI | CCNGG | 2 cut(s) | 631, 718 |
| BstV1I | GCAGC | 1 cut(s) | 577 |
| BstV2I | GAAGAC | 2 cut(s) | 469, 894 |
| Bsu36I | CCTNAGG | 1 cut(s) | 765 |
| BsuRI | GGCC | 3 cut(s) | 72, 426, 495 |
| BtgI | CCRYGG | 1 cut(s) | 67 |
| BtsCI | GGATG | 2 cut(s) | 313, 655 |
| BtsI | GCAGTG | 1 cut(s) | 276 |
| BtsIMutI | CAGTG | 4 cut(s) | 130, 243, 276, 466 |
| BveI | ACCTGC | 1 cut(s) | 559 |
| Cac8I | GCNNGC | 1 cut(s) | 130 |
| Cfr13I | GGNCC | 6 cut(s) | 71, 328, 424, 494, 515, 571 |
| CseI | GACGC | 2 cut(s) | 559, 636 |
| Csp6I | GTAC | 2 cut(s) | 168, 465 |
| CviAII | CATG | 1 cut(s) | 68 |
| CviQI | GTAC | 2 cut(s) | 168, 465 |
| DdeI | CTNAG | 5 cut(s) | 347, 765, 837, 960, 999 |
| DpnI | GATC | 3 cut(s) | 693, 717, 774 |
| DpnII | GATC | 3 cut(s) | 691, 715, 772 |
| Eam1104I | CTCTTC | 1 cut(s) | 940 |
| EarI | CTCTTC | 1 cut(s) | 940 |
| Eco130I | CCWWGG | 1 cut(s) | 67 |
| Eco24I | GRGCYC | 1 cut(s) | 403 |
| Eco47I | GGWCC | 3 cut(s) | 328, 515, 571 |
| Eco57I | CTGAAG | 1 cut(s) | 785 |
| Eco81I | CCTNAGG | 1 cut(s) | 765 |
| Eco88I | CYCGRG | 3 cut(s) | 116, 450, 510 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 510, 717 |
| EcoO109I | RGGNCCY | 3 cut(s) | 328, 494, 515 |
| EcoRII | CCWGG | 2 cut(s) | 631, 718 |
| EcoT14I | CCWWGG | 1 cut(s) | 67 |
| EcoT38I | GRGCYC | 1 cut(s) | 403 |
| ErhI | CCWWGG | 1 cut(s) | 67 |
| FaeI | CATG | 1 cut(s) | 71 |
| FaiI | YATR | 5 cut(s) | 16, 69, 486, 597, 669 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 780, 812 |
| FaqI | GGGAC | 3 cut(s) | 134, 440, 695 |
| FatI | CATG | 1 cut(s) | 67 |
| FauI | CCCGC | 2 cut(s) | 243, 292 |
| Fnu4HI | GCNGC | 1 cut(s) | 566 |
| FokI | GGATG | 2 cut(s) | 320, 662 |
| FriOI | GRGCYC | 1 cut(s) | 403 |
| Fsp4HI | GCNGC | 1 cut(s) | 566 |
| FspBI | CTAG | 6 cut(s) | 129, 264, 302, 624, 824, 1008 |
| GluI | GCNGC | 1 cut(s) | 566 |
| HaeIII | GGCC | 3 cut(s) | 72, 426, 495 |
| HapII | CCGG | 1 cut(s) | 695 |
| HgaI | GACGC | 2 cut(s) | 559, 636 |
| Hin1I | GRCGYC | 1 cut(s) | 628 |
| Hin1II | CATG | 1 cut(s) | 71 |
| HinfI | GANTC | 6 cut(s) | 453, 536, 878, 925, 962, 974 |
| HpaII | CCGG | 1 cut(s) | 695 |
| HphI | GGTGA | 2 cut(s) | 89, 383 |
| Hpy188I | TCNGA | 5 cut(s) | 661, 759, 877, 883, 961 |
| Hpy188III | TCNNGA | 5 cut(s) | 320, 527, 701, 749, 788 |
| Hpy99I | CGWCG | 2 cut(s) | 255, 582 |
| HpyAV | CCTTC | 9 cut(s) | 44, 85, 111, 158, 227, 529, 787, 806, 902 |
| HpyCH4III | ACNGT | 2 cut(s) | 125, 247 |
| HpyCH4V | TGCA | 2 cut(s) | 408, 686 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 824 |
| HpyF3I | CTNAG | 5 cut(s) | 347, 765, 837, 960, 999 |
| Hsp92I | GRCGYC | 1 cut(s) | 628 |
| Hsp92II | CATG | 1 cut(s) | 71 |
| KpnI | GGTACC | 2 cut(s) | 171, 468 |
| Kzo9I | GATC | 3 cut(s) | 691, 715, 772 |
| LmnI | GCTCC | 7 cut(s) | 232, 286, 451, 739, 745, 823, 988 |
| Lsp1109I | GCAGC | 1 cut(s) | 577 |
| LweI | GCATC | 2 cut(s) | 73, 750 |
| MaeI | CTAG | 6 cut(s) | 129, 264, 302, 624, 824, 1008 |
| MaeIII | GTNAC | 2 cut(s) | 379, 722 |
| MalI | GATC | 3 cut(s) | 693, 717, 774 |
| MbiI | CCGCTC | 2 cut(s) | 193, 446 |
| MboI | GATC | 3 cut(s) | 691, 715, 772 |
| MboII | GAAGA | 6 cut(s) | 386, 469, 545, 791, 899, 927 |
| MhlI | GDGCHC | 1 cut(s) | 403 |
| MluCI | AATT | 4 cut(s) | 541, 744, 870, 955 |
| MlyI | GAGTC | 4 cut(s) | 462, 872, 971, 983 |
| MmeI | TCCRAC | 2 cut(s) | 582, 900 |
| MseI | TTAA | 5 cut(s) | 42, 186, 864, 948, 1012 |
| MspI | CCGG | 1 cut(s) | 695 |
| MspR9I | CCNGG | 2 cut(s) | 633, 720 |
| Mva1269I | GAATGC | 2 cut(s) | 553, 820 |
| MvaI | CCWGG | 2 cut(s) | 633, 720 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 824 |
| NcoI | CCATGG | 1 cut(s) | 67 |
| NdeII | GATC | 3 cut(s) | 691, 715, 772 |
| NheI | GCTAGC | 1 cut(s) | 128 |
| NlaIII | CATG | 1 cut(s) | 71 |
| NlaIV | GGNNCC | 5 cut(s) | 73, 169, 228, 466, 517 |
| NmuCI | GTSAC | 2 cut(s) | 379, 722 |
| PaeR7I | CTCGAG | 2 cut(s) | 450, 510 |
| PctI | GAATGC | 2 cut(s) | 553, 820 |
| PfeI | GAWTC | 2 cut(s) | 536, 925 |
| PflFI | GACNNNGTC | 1 cut(s) | 707 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 68 |
| PkrI | GCNGC | 1 cut(s) | 567 |
| PleI | GAGTC | 4 cut(s) | 461, 872, 970, 982 |
| PpsI | GAGTC | 4 cut(s) | 461, 872, 970, 982 |
| PpuMI | RGGWCCY | 2 cut(s) | 328, 515 |
| Psp5II | RGGWCCY | 2 cut(s) | 328, 515 |
| Psp6I | CCWGG | 2 cut(s) | 631, 718 |
| PspGI | CCWGG | 2 cut(s) | 631, 718 |
| PspN4I | GGNNCC | 5 cut(s) | 73, 169, 228, 466, 517 |
| PspPI | GGNCC | 6 cut(s) | 71, 328, 424, 494, 515, 571 |
| PspPPI | RGGWCCY | 2 cut(s) | 328, 515 |
| PspXI | VCTCGAGB | 2 cut(s) | 450, 510 |
| PsyI | GACNNNGTC | 1 cut(s) | 707 |
| RsaI | GTAC | 2 cut(s) | 169, 466 |
| RsaNI | GTAC | 2 cut(s) | 168, 465 |
| SaqAI | TTAA | 5 cut(s) | 42, 186, 864, 948, 1012 |
| SatI | GCNGC | 1 cut(s) | 566 |
| Sau3AI | GATC | 3 cut(s) | 691, 715, 772 |
| Sau96I | GGNCC | 6 cut(s) | 71, 328, 424, 494, 515, 571 |
| SchI | GAGTC | 4 cut(s) | 462, 872, 971, 983 |
| ScrFI | CCNGG | 2 cut(s) | 633, 720 |
| SduI | GDGCHC | 1 cut(s) | 403 |
| SfaNI | GCATC | 2 cut(s) | 73, 750 |
| Sfr274I | CTCGAG | 2 cut(s) | 450, 510 |
| SinI | GGWCC | 3 cut(s) | 328, 515, 571 |
| SlaI | CTCGAG | 2 cut(s) | 450, 510 |
| SmlI | CTYRAG | 3 cut(s) | 450, 510, 675 |
| SmoI | CTYRAG | 3 cut(s) | 450, 510, 675 |
| SpeI | ACTAGT | 1 cut(s) | 263 |
| Sse9I | AATT | 4 cut(s) | 541, 744, 870, 955 |
| SsiI | CCGC | 5 cut(s) | 193, 236, 285, 444, 827 |
| SspMI | CTAG | 6 cut(s) | 129, 264, 302, 624, 824, 1008 |
| StyD4I | CCNGG | 2 cut(s) | 631, 718 |
| StyI | CCWWGG | 1 cut(s) | 67 |
| TaaI | ACNGT | 2 cut(s) | 125, 247 |
| TaqI | TCGA | 3 cut(s) | 451, 490, 511 |
| TasI | AATT | 4 cut(s) | 541, 744, 870, 955 |
| TfiI | GAWTC | 2 cut(s) | 536, 925 |
| Tru1I | TTAA | 5 cut(s) | 42, 186, 864, 948, 1012 |
| Tru9I | TTAA | 5 cut(s) | 42, 186, 864, 948, 1012 |
| TscAI | CASTG | 4 cut(s) | 130, 250, 283, 466 |
| TseFI | GTSAC | 2 cut(s) | 379, 722 |
| TseI | GCWGC | 1 cut(s) | 565 |
| Tsp45I | GTSAC | 2 cut(s) | 379, 722 |
| TspDTI | ATGAA | 2 cut(s) | 546, 900 |
| TspRI | CASTG | 4 cut(s) | 130, 250, 283, 466 |
| Tth111I | GACNNNGTC | 1 cut(s) | 707 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 68 |
| VpaK11BI | GGWCC | 3 cut(s) | 328, 515, 571 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 510, 717 |
| XapI | RAATTY | 1 cut(s) | 955 |
| XhoI | CTCGAG | 2 cut(s) | 450, 510 |
| XspI | CTAG | 6 cut(s) | 129, 264, 302, 624, 824, 1008 |