Rh6DG219400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000147
Physical Location & Seq
Reverse (-)
39016227 .. 39018301
2075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG219400.1

Sequence Viewer

Length: 573 bp
ATGGATCCTTATCCCTCTCTTCAGGCCAACATGGATGAAGGGGATATCATACTGGCTAGACCGTCGGAGGGATACATAATCAATAATCGTCTCATGCTATTGGGAGAAGGAAGCAAGGCAGAAGAAACCCCAACACCAATGCTTCAGCTAAACAACTATGCTGCTCTCGTTCAAATGGAACATGCCCAATTCCAGGTGACATCAAACCTTCAACCAATCATCAGGGAAGAGAATCCGGACATCACGGCTAACCTGGACTTTATCCCGGTGGATAATCCCGTAATGGATACTGAGTTTGCTCCATGGGGCTATACCAACCTCACCATCCCCGTAACCAACCCCTTCATGCCAGGCCCAACTACCTACTTTTATAATACCCAAACCAATGATTATGAATTGGAGCTTGTAAACTCGGCCCATCAGCCCAACCTCCTCAATATCCCTACCATCACCTACCCAGATGAGGTTGAGGAATTATTAGCAGATATTGAGAAACTTCATCAGGCCAACCCTCCGGATGCCAATCAACAGATAAACATCCTCACTGACCAGGTGACAAAACTCTGGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.47

Weight (kDa)

4.05

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
AccIII TCCGGA 2 cut(s) 235, 514
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 2 cut(s) 5, 128
AfiI CCNNNNNNNGG 3 cut(s) 68, 193, 463
AgsI TTSAA 2 cut(s) 173, 212
AjnI CCWGG 4 cut(s) 192, 252, 349, 549
AluBI AGCT 2 cut(s) 148, 403
AluI AGCT 2 cut(s) 148, 403
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 12
Aor13HI TCCGGA 2 cut(s) 235, 514
AoxI GGCC 4 cut(s) 24, 352, 414, 504
ApeKI GCWGC 1 cut(s) 161
AspS9I GGNCC 2 cut(s) 353, 415
AsuC2I CCSGG 1 cut(s) 266
AsuHPI GGTGA 4 cut(s) 208, 313, 442, 565
BamHI GGATCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 148
BccI CCATC 3 cut(s) 332, 426, 455
BceAI ACGGC 1 cut(s) 261
BciT130I CCWGG 4 cut(s) 194, 254, 351, 551
BciVI GTATCC 2 cut(s) 65, 280
BcnI CCSGG 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 1 cut(s) 57
BfuI GTATCC 2 cut(s) 65, 280
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme1390I CCNGG 5 cut(s) 194, 254, 266, 351, 551
BmgT120I GGNCC 2 cut(s) 353, 415
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 5 cut(s) 194, 254, 266, 351, 551
BmsI GCATC 1 cut(s) 508
BpuMI CCSGG 1 cut(s) 266
BsaBI GATNNNNATC 3 cut(s) 9, 522, 536
BsaJI CCNNGG 1 cut(s) 302
BsaWI WCCGGW 2 cut(s) 235, 514
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 193, 463
Bse1I ACTGG 1 cut(s) 57
Bse8I GATNNNNATC 3 cut(s) 9, 522, 536
BseAI TCCGGA 2 cut(s) 235, 514
BseBI CCWGG 4 cut(s) 194, 254, 351, 551
BseDI CCNNGG 1 cut(s) 302
BseGI GGATG 4 cut(s) 40, 324, 523, 537
BseJI GATNNNNATC 3 cut(s) 9, 522, 536
BseLI CCNNNNNNNGG 3 cut(s) 68, 193, 463
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 422
BseXI GCAGC 1 cut(s) 148
BshFI GGCC 4 cut(s) 26, 354, 416, 506
BsiSI CCGG 3 cut(s) 236, 266, 515
BslI CCNNNNNNNGG 3 cut(s) 68, 193, 463
BsmAI GTCTC 1 cut(s) 95
BsmBI CGTCTC 1 cut(s) 95
BsnI GGCC 4 cut(s) 26, 354, 416, 506
Bsp13I TCCGGA 2 cut(s) 235, 514
Bsp143I GATC 1 cut(s) 4
Bsp19I CCATGG 1 cut(s) 302
BspANI GGCC 4 cut(s) 26, 354, 416, 506
BspCNI CTCAG 1 cut(s) 283
BspEI TCCGGA 2 cut(s) 235, 514
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 1 cut(s) 4
BssT1I CCWWGG 1 cut(s) 302
Bst2UI CCWGG 4 cut(s) 194, 254, 351, 551
Bst4CI ACNGT 1 cut(s) 63
Bst6I CTCTTC 2 cut(s) 24, 222
BstDEI CTNAG 1 cut(s) 291
BstDSI CCRYGG 1 cut(s) 302
BstF5I GGATG 4 cut(s) 40, 324, 523, 537
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 1 cut(s) 4
BstNI CCWGG 4 cut(s) 194, 254, 351, 551
BstNSI RCATGY 1 cut(s) 185
BstSCI CCNGG 5 cut(s) 192, 252, 264, 349, 549
BstV1I GCAGC 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuI GTATCC 2 cut(s) 65, 280
BsuRI GGCC 4 cut(s) 26, 354, 416, 506
BtgI CCRYGG 1 cut(s) 302
BtsCI GGATG 4 cut(s) 40, 324, 523, 537
BtsIMutI CAGTG 1 cut(s) 543
Cfr13I GGNCC 2 cut(s) 353, 415
CsiI ACCWGGT 1 cut(s) 549
CviAII CATG 5 cut(s) 31, 94, 182, 303, 346
DdeI CTNAG 1 cut(s) 291
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Eam1104I CTCTTC 2 cut(s) 24, 222
EarI CTCTTC 2 cut(s) 24, 222
Eco130I CCWWGG 1 cut(s) 302
Eco32I GATATC 1 cut(s) 46
Eco57I CTGAAG 2 cut(s) 5, 128
EcoRII CCWGG 4 cut(s) 192, 252, 349, 549
EcoRV GATATC 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 302
ErhI CCWWGG 1 cut(s) 302
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 5 cut(s) 34, 97, 185, 306, 349
FatI CATG 5 cut(s) 30, 93, 181, 302, 345
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 4 cut(s) 47, 311, 524, 530
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 1 cut(s) 57
GluI GCNGC 1 cut(s) 162
HaeIII GGCC 4 cut(s) 26, 354, 416, 506
HapII CCGG 3 cut(s) 236, 266, 515
Hin1II CATG 5 cut(s) 34, 97, 185, 306, 349
HinfI GANTC 1 cut(s) 232
HpaII CCGG 3 cut(s) 236, 266, 515
HphI GGTGA 4 cut(s) 208, 313, 442, 565
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 3 cut(s) 236, 515, 565
Hpy8I GTNNAC 1 cut(s) 409
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 4 cut(s) 32, 101, 218, 352
HpyCH4III ACNGT 1 cut(s) 63
HpyF3I CTNAG 1 cut(s) 291
Hsp92II CATG 5 cut(s) 34, 97, 185, 306, 349
Kpn2I TCCGGA 2 cut(s) 235, 514
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 2 cut(s) 304, 400
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 1 cut(s) 508
MabI ACCWGGT 1 cut(s) 549
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 3 cut(s) 196, 331, 553
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 3 cut(s) 11, 134, 239
MflI RGATCY 1 cut(s) 4
MluCI AATT 3 cut(s) 188, 395, 473
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 9 cut(s) 25, 61, 329, 440, 443, 457, 463, 522, 551
MroI TCCGGA 2 cut(s) 235, 514
MseI TTAA 1 cut(s) 571
MspI CCGG 3 cut(s) 236, 266, 515
MspR9I CCNGG 5 cut(s) 194, 254, 266, 351, 551
MvaI CCWGG 4 cut(s) 194, 254, 351, 551
NciI CCSGG 1 cut(s) 266
NcoI CCATGG 1 cut(s) 302
NdeII GATC 1 cut(s) 4
NlaIII CATG 5 cut(s) 34, 97, 185, 306, 349
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 392
NmuCI GTSAC 2 cut(s) 196, 553
NspI RCATGY 1 cut(s) 185
PfeI GAWTC 1 cut(s) 232
PkrI GCNGC 1 cut(s) 163
PsiI TTATAA 1 cut(s) 372
Psp6I CCWGG 4 cut(s) 192, 252, 349, 549
PspGI CCWGG 4 cut(s) 192, 252, 349, 549
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 353, 415
PsuI RGATCY 1 cut(s) 4
SaqAI TTAA 1 cut(s) 571
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 2 cut(s) 353, 415
ScrFI CCNGG 5 cut(s) 194, 254, 266, 351, 551
SexAI ACCWGGT 1 cut(s) 549
SfaNI GCATC 1 cut(s) 508
Sse9I AATT 3 cut(s) 188, 395, 473
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 5 cut(s) 192, 252, 264, 349, 549
StyI CCWWGG 1 cut(s) 302
TaaI ACNGT 1 cut(s) 63
TasI AATT 3 cut(s) 188, 395, 473
TfiI GAWTC 1 cut(s) 232
Tru1I TTAA 1 cut(s) 571
Tru9I TTAA 1 cut(s) 571
TscAI CASTG 1 cut(s) 550
TseFI GTSAC 2 cut(s) 196, 553
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 2 cut(s) 196, 553
TspDTI ATGAA 4 cut(s) 51, 334, 408, 488
TspRI CASTG 1 cut(s) 550
XceI RCATGY 1 cut(s) 185
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.