Rh7DG294700

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000147
Physical Location & Seq
Reverse (-)
33482275 .. 33487724
5450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG294700.1

Sequence Viewer

Length: 843 bp
ATGGAGACTCGACAGCAAGAGCCGGTGCTCAATTTTTGGAAAAAACAACTACTGTTTGATCACTTGTTTGTGGTCAACCCATCTCGAAGTGGTGGTGGTGGTCTTGCTCTCTTTTGGAACAACTCAGTTCATGTCTCTACTATAACAGGCTCGGTTAACTATATAAATACTACTGTGTGTTTTACTTCTGATGCTTTCCATTGTAATGTTTCTTGGATGTATGGGAACCCCCATGTTAATCAAAAAGTAGCCTTTTGGCATTCTCTTTACTCATCCTTCTCTGCCCATGCCCTTCCTTGGTTGTGCTTGGGGGATTTCAATGAAATTTTGTGGCTGCATGAAAAGTGGGGGGGTCTTCCGCAACCCCGTTGGAGGATCAACTTGTTTCAAGATTTCCTCAACCACTCACAACTATCGGATCTTCTTTTTCATGGTCCGGATTATACCTGGTTCTGCTTTCATCATGGCAAGATTGTAATCAAAGAACGGTTAGACAGAGCTCTGGCAAATAATGAATGGATCACAAGCCAACCCCGATCTCAGGTTTTTCATTTACCTCTTCTTGGATCGGATCACCGACCAATCATGCTCGATACAAATCCATATGAGTTGAAGCCTCCCCCTATTTTCCGCTTCGAGCACCTGTGGACCACTCATCCTGCAAGTTTTGACTTGGTTCGCTCTTGTTGGCAAGCCACCTCATCGATTGCAATGCCCGCTGCTCAGCTTGAATCTTTATCGCAAAAATTCGAAGCAATACAGAATGAACATAATTGGGGGCTGAAATTAGGGAATTTGGAAAGCTCCATACCTGGTTTGGAATCAGAGAAGACGAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

280

Amino Acids

32.31

Weight (kDa)

6.59

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 24 - 192 2e-09 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 436
AciI CCGC 3 cut(s) 359, 631, 717
AclWI GGATC 5 cut(s) 383, 426, 527, 574, 579
AcsI RAATTY 3 cut(s) 324, 746, 793
AfiI CCNNNNNNNGG 4 cut(s) 297, 372, 541, 563
AgsI TTSAA 4 cut(s) 319, 389, 613, 731
AjnI CCWGG 2 cut(s) 446, 811
AluBI AGCT 3 cut(s) 500, 727, 804
AluI AGCT 3 cut(s) 500, 727, 804
Alw21I GWGCWC 3 cut(s) 30, 502, 642
Alw26I GTCTC 1 cut(s) 139
AlwI GGATC 5 cut(s) 383, 426, 527, 574, 579
Aor13HI TCCGGA 1 cut(s) 436
ApeKI GCWGC 2 cut(s) 334, 719
ApoI RAATTY 3 cut(s) 324, 746, 793
AspS9I GGNCC 2 cut(s) 434, 648
AsuHPI GGTGA 1 cut(s) 566
AsuII TTCGAA 1 cut(s) 750
AvaII GGWCC 2 cut(s) 434, 648
BanII GRGCYC 1 cut(s) 502
BbsI GAAGAC 2 cut(s) 347, 836
Bbv12I GWGCWC 3 cut(s) 30, 502, 642
BbvI GCAGC 2 cut(s) 321, 706
BccI CCATC 1 cut(s) 88
BcgI CGANNNNNNTGC 2 cut(s) 694, 728
BciT130I CCWGG 2 cut(s) 448, 813
BclI TGATCA 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 139
BisI GCNGC 2 cut(s) 335, 720
BlpI GCTNAGC 1 cut(s) 723
BlsI GCNGC 2 cut(s) 336, 721
Bme1390I CCNGG 2 cut(s) 448, 813
Bme18I GGWCC 2 cut(s) 434, 648
BmgT120I GGNCC 2 cut(s) 434, 648
BmiI GGNNCC 1 cut(s) 227
BmrFI CCNGG 2 cut(s) 448, 813
BmsI GCATC 1 cut(s) 181
BpiI GAAGAC 2 cut(s) 347, 836
Bpu1102I GCTNAGC 1 cut(s) 723
Bpu14I TTCGAA 1 cut(s) 750
Bsa29I ATCGAT 1 cut(s) 704
BsaBI GATNNNNATC 2 cut(s) 476, 597
BsaJI CCNNGG 1 cut(s) 296
BsaWI WCCGGW 1 cut(s) 436
Bsc4I CCNNNNNNNGG 4 cut(s) 297, 372, 541, 563
Bse118I RCCGGY 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 717
Bse8I GATNNNNATC 2 cut(s) 476, 597
BseAI TCCGGA 1 cut(s) 436
BseBI CCWGG 2 cut(s) 448, 813
BseCI ATCGAT 1 cut(s) 704
BseDI CCNNGG 1 cut(s) 296
BseGI GGATG 3 cut(s) 222, 272, 655
BseJI GATNNNNATC 2 cut(s) 476, 597
BseLI CCNNNNNNNGG 4 cut(s) 297, 372, 541, 563
BseMI GCAATG 1 cut(s) 717
BseMII CTCAG 3 cut(s) 138, 554, 737
BseXI GCAGC 2 cut(s) 321, 706
BshVI ATCGAT 1 cut(s) 704
BsiHKAI GWGCWC 3 cut(s) 30, 502, 642
BsiSI CCGG 2 cut(s) 23, 437
BslI CCNNNNNNNGG 4 cut(s) 297, 372, 541, 563
BsmAI GTCTC 1 cut(s) 139
BsmI GAATGC 1 cut(s) 259
Bsp119I TTCGAA 1 cut(s) 750
Bsp1286I GDGCHC 3 cut(s) 30, 502, 642
Bsp13I TCCGGA 1 cut(s) 436
Bsp143I GATC 7 cut(s) 58, 375, 418, 519, 536, 566, 571
Bsp1720I GCTNAGC 1 cut(s) 723
BspACI CCGC 3 cut(s) 359, 631, 717
BspCNI CTCAG 3 cut(s) 137, 553, 736
BspDI ATCGAT 1 cut(s) 704
BspEI TCCGGA 1 cut(s) 436
BspLI GGNNCC 1 cut(s) 227
BspPI GGATC 5 cut(s) 383, 426, 527, 574, 579
BspT104I TTCGAA 1 cut(s) 750
BsrDI GCAATG 1 cut(s) 717
BsrFI RCCGGY 1 cut(s) 22
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 296
BssMI GATC 7 cut(s) 58, 375, 418, 519, 536, 566, 571
BssT1I CCWWGG 1 cut(s) 296
Bst2UI CCWGG 2 cut(s) 448, 813
Bst4CI ACNGT 3 cut(s) 54, 175, 489
Bst6I CTCTTC 1 cut(s) 564
BstBI TTCGAA 1 cut(s) 750
BstC8I GCNNGC 2 cut(s) 693, 717
BstDEI CTNAG 3 cut(s) 124, 540, 723
BstF5I GGATG 3 cut(s) 222, 272, 655
BstKTI GATC 7 cut(s) 61, 378, 421, 522, 539, 569, 574
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 7 cut(s) 58, 375, 418, 519, 536, 566, 571
BstMWI GCNNNNNNNGC 1 cut(s) 716
BstNI CCWGG 2 cut(s) 448, 813
BstSCI CCNGG 2 cut(s) 446, 811
BstV1I GCAGC 2 cut(s) 321, 706
BstV2I GAAGAC 2 cut(s) 347, 836
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
Bsu15I ATCGAT 1 cut(s) 704
BsuTUI ATCGAT 1 cut(s) 704
BtsCI GGATG 3 cut(s) 222, 272, 655
Cac8I GCNNGC 2 cut(s) 693, 717
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 2 cut(s) 434, 648
ClaI ATCGAT 1 cut(s) 704
CsiI ACCWGGT 2 cut(s) 446, 811
CviAII CATG 7 cut(s) 131, 233, 287, 338, 431, 464, 586
DdeI CTNAG 3 cut(s) 124, 540, 723
DpnI GATC 7 cut(s) 60, 377, 420, 521, 538, 568, 573
DpnII GATC 7 cut(s) 58, 375, 418, 519, 536, 566, 571
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
Ecl136II GAGCTC 1 cut(s) 500
Eco130I CCWWGG 1 cut(s) 296
Eco24I GRGCYC 1 cut(s) 502
Eco47I GGWCC 2 cut(s) 434, 648
Eco53kI GAGCTC 1 cut(s) 500
EcoICRI GAGCTC 1 cut(s) 500
EcoRII CCWGG 2 cut(s) 446, 811
EcoT14I CCWWGG 1 cut(s) 296
EcoT38I GRGCYC 1 cut(s) 502
ErhI CCWWGG 1 cut(s) 296
FaeI CATG 7 cut(s) 134, 236, 290, 341, 434, 467, 589
FatI CATG 7 cut(s) 130, 232, 286, 337, 430, 463, 585
FauI CCCGC 1 cut(s) 724
FauNDI CATATG 1 cut(s) 604
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 2 cut(s) 335, 720
FokI GGATG 3 cut(s) 229, 259, 642
FriOI GRGCYC 1 cut(s) 502
Fsp4HI GCNGC 2 cut(s) 335, 720
GluI GCNGC 2 cut(s) 335, 720
HapII CCGG 2 cut(s) 23, 437
Hin1II CATG 7 cut(s) 134, 236, 290, 341, 434, 467, 589
HincII GTYRAC 2 cut(s) 76, 157
HindII GTYRAC 2 cut(s) 76, 157
HinfI GANTC 3 cut(s) 7, 731, 821
HpaI GTTAAC 1 cut(s) 157
HpaII CCGG 2 cut(s) 23, 437
HphI GGTGA 1 cut(s) 566
Hpy166II GTNNAC 3 cut(s) 76, 157, 648
Hpy188I TCNGA 4 cut(s) 190, 418, 571, 826
Hpy188III TCNNGA 3 cut(s) 84, 389, 437
Hpy8I GTNNAC 3 cut(s) 76, 157, 648
HpyAV CCTTC 3 cut(s) 286, 302, 829
HpyCH4III ACNGT 3 cut(s) 54, 175, 489
HpyCH4V TGCA 3 cut(s) 337, 662, 710
HpyF10VI GCNNNNNNNGC 1 cut(s) 716
HpyF3I CTNAG 3 cut(s) 124, 540, 723
Hsp92II CATG 7 cut(s) 134, 236, 290, 341, 434, 467, 589
Kpn2I TCCGGA 1 cut(s) 436
Ksp22I TGATCA 1 cut(s) 58
KspAI GTTAAC 1 cut(s) 157
Kzo9I GATC 7 cut(s) 58, 375, 418, 519, 536, 566, 571
LmnI GCTCC 1 cut(s) 809
Lsp1109I GCAGC 2 cut(s) 321, 706
LweI GCATC 1 cut(s) 181
MabI ACCWGGT 2 cut(s) 446, 811
MalI GATC 7 cut(s) 60, 377, 420, 521, 538, 568, 573
MboI GATC 7 cut(s) 58, 375, 418, 519, 536, 566, 571
MboII GAAGA 4 cut(s) 347, 413, 551, 841
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 3 cut(s) 30, 502, 642
MluCI AATT 6 cut(s) 31, 324, 746, 772, 785, 793
MmeI TCCRAC 1 cut(s) 350
MnlI CCTC 5 cut(s) 366, 407, 567, 627, 709
MroI TCCGGA 1 cut(s) 436
MseI TTAA 2 cut(s) 156, 237
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 719
MspI CCGG 2 cut(s) 23, 437
MspR9I CCNGG 2 cut(s) 448, 813
Mva1269I GAATGC 1 cut(s) 259
MvaI CCWGG 2 cut(s) 448, 813
MwoI GCNNNNNNNGC 1 cut(s) 716
NdeI CATATG 1 cut(s) 604
NdeII GATC 7 cut(s) 58, 375, 418, 519, 536, 566, 571
NlaIII CATG 7 cut(s) 134, 236, 290, 341, 434, 467, 589
NlaIV GGNNCC 1 cut(s) 227
NspV TTCGAA 1 cut(s) 750
PctI GAATGC 1 cut(s) 259
PfeI GAWTC 2 cut(s) 731, 821
PkrI GCNGC 2 cut(s) 336, 721
Psp124BI GAGCTC 1 cut(s) 502
Psp6I CCWGG 2 cut(s) 446, 811
PspGI CCWGG 2 cut(s) 446, 811
PspN4I GGNNCC 1 cut(s) 227
PspPI GGNCC 2 cut(s) 434, 648
PsuI RGATCY 1 cut(s) 418
RseI CAYNNNNRTG 1 cut(s) 204
SacI GAGCTC 1 cut(s) 502
SaqAI TTAA 2 cut(s) 156, 237
SatI GCNGC 2 cut(s) 335, 720
Sau3AI GATC 7 cut(s) 58, 375, 418, 519, 536, 566, 571
Sau96I GGNCC 2 cut(s) 434, 648
ScrFI CCNGG 2 cut(s) 448, 813
SduI GDGCHC 3 cut(s) 30, 502, 642
SetI ASST 9 cut(s) 449, 502, 546, 559, 645, 701, 729, 806, 814
SexAI ACCWGGT 2 cut(s) 446, 811
SfaNI GCATC 1 cut(s) 181
SfuI TTCGAA 1 cut(s) 750
SinI GGWCC 2 cut(s) 434, 648
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 6 cut(s) 31, 324, 746, 772, 785, 793
SsiI CCGC 3 cut(s) 359, 631, 717
SstI GAGCTC 1 cut(s) 502
StyD4I CCNGG 2 cut(s) 446, 811
StyI CCWWGG 1 cut(s) 296
TaaI ACNGT 3 cut(s) 54, 175, 489
TaqI TCGA 6 cut(s) 10, 85, 591, 636, 704, 750
TasI AATT 6 cut(s) 31, 324, 746, 772, 785, 793
TfiI GAWTC 2 cut(s) 731, 821
Tru1I TTAA 2 cut(s) 156, 237
Tru9I TTAA 2 cut(s) 156, 237
TseI GCWGC 2 cut(s) 334, 719
TspDTI ATGAA 8 cut(s) 119, 336, 354, 419, 449, 528, 539, 780
VpaK11BI GGWCC 2 cut(s) 434, 648
XapI RAATTY 3 cut(s) 324, 746, 793
XcmI CCANNNNNNNNNTGG 1 cut(s) 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.