Rmu_sc0010556.1_g000009

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010556.1
OG0000147
Physical Location & Seq
Reverse (-)
38929 .. 39861
933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010556.1_g000009.1.cds

Sequence Viewer

Length: 933 bp
atgaaaaataagaatctgaagaaggtaaggaaggactgcaagtttcctttcggcatcactgtgaagcctatcagaactgctggtgggttggcactgtggtgggatcattcggttactgttcaagttctctctaaatccaaaaacctgatagatactgttgtgcaatttaaatctgatggttctctggtcagattctcttggttctatggaccaccatcaatggaggccaaaccgtctttttggagaaattgtaggtatcttgctggatgcatcgatctcccttggctgtgtgcaggagattttaatgaatttctttggcctcatgagaaagagggtggtaatccctggaatccgggcaaaaggcgtttcttgagggagtttatggaggccaatgatttgcttgatattcaattcaaagggcagaagtttacgtggagtaataattggccgggtggaggtctcattaaaatccgattggatcgaggcatcgtcaatacgaaatggctagaaagatggccggagacaagtgtttttcattttccaaagctgggttctgaccactgcccattgatctttgacgctgatccacctttggatcgaggcccaaaaacttttaagtttgagccttcttgggttgacgacagagaatgcaaagaggtgatatcaagggcttgggacgttccttgcgacggtaccagtgcctctcaatgggttggtaagattgatcgttgcgccaaggacttatctacttggagtaagttgaaattttcaaattatagaaagactataaacaatcacattgaagaacttcaactgcttcaggattcctcttttgaggatgatagaaagagagttgatactcttattgctgaggtggcagagttatgggataaggaggagagttactgggcacaaagatccagagtgaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

310

Amino Acids

36.17

Weight (kDa)

8.8

Isoelectric Point (pI)

30.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 692
AccB1I GGYRCC 1 cut(s) 692
AclWI GGATC 5 cut(s) 111, 486, 578, 603, 912
AcoI YGGCCR 2 cut(s) 446, 515
AcsI RAATTY 2 cut(s) 308, 764
AcuI CTGAAG 2 cut(s) 38, 803
AfaI GTAC 1 cut(s) 694
AfiI CCNNNNNNNGG 4 cut(s) 455, 548, 689, 708
AgsI TTSAA 7 cut(s) 122, 410, 415, 763, 771, 803, 812
AjnI CCWGG 1 cut(s) 344
AjuI GAANNNNNNNTTGG 2 cut(s) 535, 567
AleI CACNNNNGTG 1 cut(s) 97
AluBI AGCT 1 cut(s) 547
AluI AGCT 1 cut(s) 547
Alw26I GTCTC 2 cut(s) 464, 515
AlwI GGATC 5 cut(s) 111, 486, 578, 603, 912
AoxI GGCC 6 cut(s) 225, 317, 387, 446, 515, 601
ApoI RAATTY 2 cut(s) 308, 764
Asp700I GAANNNNTTC 1 cut(s) 807
Asp718I GGTACC 1 cut(s) 692
AspLEI GCGC 1 cut(s) 734
AspS9I GGNCC 2 cut(s) 209, 602
AsuC2I CCSGG 2 cut(s) 354, 450
AsuHPI GGTGA 1 cut(s) 670
AvaII GGWCC 1 cut(s) 209
BaeGI GKGCMC 1 cut(s) 913
BaeI ACNNNNGTAYC 2 cut(s) 144, 177
BanI GGYRCC 1 cut(s) 692
BbvCI CCTCAGC 1 cut(s) 870
BccI CCATC 3 cut(s) 170, 223, 507
BciT130I CCWGG 1 cut(s) 346
BcnI CCSGG 2 cut(s) 354, 450
BcoDI GTCTC 2 cut(s) 464, 515
BfaI CTAG 2 cut(s) 506, 931
Bme1390I CCNGG 3 cut(s) 346, 354, 450
Bme18I GGWCC 1 cut(s) 209
BmgT120I GGNCC 2 cut(s) 209, 602
BmiI GGNNCC 1 cut(s) 694
BmrFI CCNGG 3 cut(s) 346, 354, 450
BmrI ACTGGG 1 cut(s) 916
BmsI GCATC 4 cut(s) 63, 257, 279, 495
BmuI ACTGGG 1 cut(s) 916
Bpu10I CCTNAGC 1 cut(s) 870
BpuEI CTTGAG 1 cut(s) 391
BpuMI CCSGG 2 cut(s) 354, 450
Bsa29I ATCGAT 1 cut(s) 273
BsaAI YACGTR 1 cut(s) 432
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 3 cut(s) 281, 344, 735
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 4 cut(s) 455, 548, 689, 708
Bse1I ACTGG 2 cut(s) 696, 911
BseBI CCWGG 1 cut(s) 346
BseCI ATCGAT 1 cut(s) 273
BseDI CCNNGG 3 cut(s) 281, 344, 735
BseGI GGATG 2 cut(s) 272, 844
BseLI CCNNNNNNNGG 4 cut(s) 455, 548, 689, 708
BseMII CTCAG 1 cut(s) 861
BseNI ACTGG 2 cut(s) 696, 911
BseRI GAGGAG 1 cut(s) 911
BseSI GKGCMC 1 cut(s) 913
BseYI CCCAGC 1 cut(s) 547
BsgI GTGCAG 1 cut(s) 312
BshFI GGCC 6 cut(s) 227, 319, 389, 448, 517, 603
BshNI GGYRCC 1 cut(s) 692
BshVI ATCGAT 1 cut(s) 273
BsiSI CCGG 3 cut(s) 353, 449, 518
BslFI GGGAC 1 cut(s) 689
BslI CCNNNNNNNGG 4 cut(s) 455, 548, 689, 708
BsmAI GTCTC 2 cut(s) 464, 515
BsmFI GGGAC 1 cut(s) 689
BsmI GAATGC 1 cut(s) 653
BsnI GGCC 6 cut(s) 227, 319, 389, 448, 517, 603
Bso31I GGTCTC 1 cut(s) 464
Bsp1286I GDGCHC 1 cut(s) 913
Bsp143I GATC 8 cut(s) 103, 274, 478, 570, 583, 595, 724, 917
BspANI GGCC 6 cut(s) 227, 319, 389, 448, 517, 603
BspCNI CTCAG 1 cut(s) 862
BspDI ATCGAT 1 cut(s) 273
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 694
BspPI GGATC 5 cut(s) 111, 486, 578, 603, 912
BspT107I GGYRCC 1 cut(s) 692
BspTNI GGTCTC 1 cut(s) 464
BsrI ACTGG 2 cut(s) 696, 911
BssECI CCNNGG 3 cut(s) 281, 344, 735
BssMI GATC 8 cut(s) 103, 274, 478, 570, 583, 595, 724, 917
BssT1I CCWWGG 2 cut(s) 281, 735
Bst2UI CCWGG 1 cut(s) 346
Bst4CI ACNGT 6 cut(s) 61, 96, 118, 157, 234, 692
BstBAI YACGTR 1 cut(s) 432
BstDEI CTNAG 1 cut(s) 870
BstF5I GGATG 2 cut(s) 272, 844
BstHHI GCGC 1 cut(s) 734
BstKTI GATC 8 cut(s) 106, 277, 481, 573, 586, 598, 727, 920
BstMAI GTCTC 2 cut(s) 464, 515
BstMBI GATC 8 cut(s) 103, 274, 478, 570, 583, 595, 724, 917
BstMWI GCNNNNNNNGC 1 cut(s) 875
BstNI CCWGG 1 cut(s) 346
BstSCI CCNGG 3 cut(s) 344, 352, 448
BstSLI GKGCMC 1 cut(s) 913
BstX2I RGATCY 1 cut(s) 917
BstYI RGATCY 1 cut(s) 917
Bsu15I ATCGAT 1 cut(s) 273
BsuRI GGCC 6 cut(s) 227, 319, 389, 448, 517, 603
BsuTUI ATCGAT 1 cut(s) 273
BtsCI GGATG 2 cut(s) 272, 844
BtsI GCAGTG 1 cut(s) 559
BtsIMutI CAGTG 4 cut(s) 57, 92, 559, 703
CciI TCATGA 1 cut(s) 322
CfoI GCGC 1 cut(s) 734
Cfr13I GGNCC 2 cut(s) 209, 602
ClaI ATCGAT 1 cut(s) 273
CseI GACGC 1 cut(s) 587
Csp6I GTAC 1 cut(s) 693
CviAII CATG 1 cut(s) 323
CviQI GTAC 1 cut(s) 693
DdeI CTNAG 1 cut(s) 870
DpnI GATC 8 cut(s) 105, 276, 480, 572, 585, 597, 726, 919
DpnII GATC 8 cut(s) 103, 274, 478, 570, 583, 595, 724, 917
DraI TTTAAA 1 cut(s) 169
EaeI YGGCCR 2 cut(s) 446, 515
Eco130I CCWWGG 2 cut(s) 281, 735
Eco31I GGTCTC 1 cut(s) 464
Eco32I GATATC 1 cut(s) 663
Eco47I GGWCC 1 cut(s) 209
Eco57I CTGAAG 2 cut(s) 38, 803
EcoRII CCWGG 1 cut(s) 344
EcoRV GATATC 1 cut(s) 663
EcoT14I CCWWGG 2 cut(s) 281, 735
EcoT22I ATGCAT 1 cut(s) 272
ErhI CCWWGG 2 cut(s) 281, 735
FaeI CATG 1 cut(s) 326
FaiI YATR 6 cut(s) 207, 324, 383, 777, 788, 886
FaqI GGGAC 1 cut(s) 689
FatI CATG 1 cut(s) 322
FokI GGATG 2 cut(s) 279, 851
FspBI CTAG 2 cut(s) 506, 931
GlaI GCGC 1 cut(s) 733
GsaI CCCAGC 1 cut(s) 551
HaeIII GGCC 6 cut(s) 227, 319, 389, 448, 517, 603
HapII CCGG 3 cut(s) 353, 449, 518
HgaI GACGC 1 cut(s) 587
HhaI GCGC 1 cut(s) 734
Hin1II CATG 1 cut(s) 326
Hin6I GCGC 1 cut(s) 732
HinP1I GCGC 1 cut(s) 732
HincII GTYRAC 1 cut(s) 637
HindII GTYRAC 1 cut(s) 637
HinfI GANTC 4 cut(s) 13, 192, 349, 824
HpaII CCGG 3 cut(s) 353, 449, 518
HphI GGTGA 1 cut(s) 670
Hpy166II GTNNAC 3 cut(s) 429, 637, 928
Hpy188I TCNGA 6 cut(s) 18, 74, 175, 191, 473, 556
Hpy188III TCNNGA 4 cut(s) 323, 370, 821, 921
Hpy8I GTNNAC 3 cut(s) 429, 637, 928
Hpy99I CGWCG 1 cut(s) 692
HpyAV CCTTC 3 cut(s) 16, 25, 636
HpyCH4III ACNGT 6 cut(s) 61, 96, 118, 157, 234, 692
HpyCH4IV ACGT 2 cut(s) 431, 678
HpyCH4V TGCA 5 cut(s) 39, 163, 270, 293, 651
HpyF10VI GCNNNNNNNGC 1 cut(s) 875
HpyF3I CTNAG 1 cut(s) 870
HpySE526I ACGT 2 cut(s) 431, 678
Hsp92II CATG 1 cut(s) 326
HspAI GCGC 1 cut(s) 732
KpnI GGTACC 1 cut(s) 696
Kzo9I GATC 8 cut(s) 103, 274, 478, 570, 583, 595, 724, 917
LweI GCATC 4 cut(s) 63, 257, 279, 495
MaeI CTAG 2 cut(s) 506, 931
MaeII ACGT 2 cut(s) 431, 678
MaeIII GTNAC 2 cut(s) 112, 902
MalI GATC 8 cut(s) 105, 276, 480, 572, 585, 597, 726, 919
MboI GATC 8 cut(s) 103, 274, 478, 570, 583, 595, 724, 917
MboII GAAGA 2 cut(s) 31, 815
MflI RGATCY 1 cut(s) 917
MhlI GDGCHC 1 cut(s) 913
MluCI AATT 7 cut(s) 164, 247, 308, 410, 442, 764, 772
Mph1103I ATGCAT 1 cut(s) 272
MroXI GAANNNNTTC 1 cut(s) 807
MseI TTAA 4 cut(s) 168, 303, 465, 615
MslI CAYNNNNRTG 2 cut(s) 59, 97
MspI CCGG 3 cut(s) 353, 449, 518
MspR9I CCNGG 3 cut(s) 346, 354, 450
Mva1269I GAATGC 1 cut(s) 653
MvaI CCWGG 1 cut(s) 346
MwoI GCNNNNNNNGC 1 cut(s) 875
NciI CCSGG 2 cut(s) 354, 450
NdeII GATC 8 cut(s) 103, 274, 478, 570, 583, 595, 724, 917
NlaIII CATG 1 cut(s) 326
NlaIV GGNNCC 1 cut(s) 694
NsiI ATGCAT 1 cut(s) 272
OliI CACNNNNGTG 1 cut(s) 97
PagI TCATGA 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 684
PctI GAATGC 1 cut(s) 653
PdmI GAANNNNTTC 1 cut(s) 807
PfeI GAWTC 4 cut(s) 13, 192, 349, 824
Ppu21I YACGTR 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 344
PspFI CCCAGC 1 cut(s) 547
PspGI CCWGG 1 cut(s) 344
PspN4I GGNNCC 1 cut(s) 694
PspPI GGNCC 2 cut(s) 209, 602
PsuI RGATCY 1 cut(s) 917
RsaI GTAC 1 cut(s) 694
RsaNI GTAC 1 cut(s) 693
RseI CAYNNNNRTG 2 cut(s) 59, 97
SaqAI TTAA 4 cut(s) 168, 303, 465, 615
Sau3AI GATC 8 cut(s) 103, 274, 478, 570, 583, 595, 724, 917
Sau96I GGNCC 2 cut(s) 209, 602
ScrFI CCNGG 3 cut(s) 346, 354, 450
SduI GDGCHC 1 cut(s) 913
SfaNI GCATC 4 cut(s) 63, 257, 279, 495
SinI GGWCC 1 cut(s) 209
SmiI ATTTAAAT 1 cut(s) 169
SmiMI CAYNNNNRTG 2 cut(s) 59, 97
SmlI CTYRAG 1 cut(s) 370
SmoI CTYRAG 1 cut(s) 370
Sse9I AATT 7 cut(s) 164, 247, 308, 410, 442, 764, 772
SspMI CTAG 2 cut(s) 506, 931
StyD4I CCNGG 3 cut(s) 344, 352, 448
StyI CCWWGG 2 cut(s) 281, 735
SwaI ATTTAAAT 1 cut(s) 169
TaaI ACNGT 6 cut(s) 61, 96, 118, 157, 234, 692
TaiI ACGT 2 cut(s) 434, 681
TaqI TCGA 3 cut(s) 273, 481, 598
TasI AATT 7 cut(s) 164, 247, 308, 410, 442, 764, 772
TfiI GAWTC 4 cut(s) 13, 192, 349, 824
Tru1I TTAA 4 cut(s) 168, 303, 465, 615
Tru9I TTAA 4 cut(s) 168, 303, 465, 615
TscAI CASTG 4 cut(s) 64, 99, 566, 703
TspDTI ATGAA 3 cut(s) 17, 321, 524
TspRI CASTG 4 cut(s) 64, 99, 566, 703
VpaK11BI GGWCC 1 cut(s) 209
XapI RAATTY 2 cut(s) 308, 764
XmnI GAANNNNTTC 1 cut(s) 807
XspI CTAG 2 cut(s) 506, 931
Zsp2I ATGCAT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.