Rh2DG200100

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000147
Physical Location & Seq
Forward (+)
18429262 .. 18432475
3214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG200100.1

Sequence Viewer

Length: 684 bp
ATGGAACGGAGCGGGAATAAAGTAGAAGACGTCAATCCTACAAACAATGGGGGCGGTGGACTTGCTCTATTTTGGGACAGATCTGTCCAAGTCTTTAGTATTATCGGCACAGTTAATTATATAAATACTAGTGTGTTTTTTATTTCTGAAAATTTCCTTTGTAATGTGTCTTGGTTGTATGGGAACCCCCCTGTTAATCAAAAGGCAGTCTTCTGGTGTTCTTTGTACACGGTCTTCTCCCCTCATTTTCTCCCCTGGTTGTGTTTGGGGGATTTCAACGAAATTCTGTGGTTGCATGAAAAATGGGGAGGCCTCCCTCAACCACGATGGAGGATTAACCTGTTCAAAGATTTTCTAAACCATGCTCATCTATTGGATCTCCTCTTTCAAGGGCCAAATTATACTTGGTTCTGCTTTCAACATGGAAAGGTGGTCATTAAGGAACGGTTGGACCGCACCCTTGGCAACAATGATTGGATTGCAAATCAGCCTAAGACCCAGGTCTTTCATCTTCCTTTGCTTGGATCGGACCCTCGACCAATTATGCTAGACACTAATCCCATGGAGTTTATGGCTTCCCCTATATTCCAATTTGAACATTTGTGGACCACACATCCGGCTAGCATGCAGATAGCCTACTCCAACTGGCAGACCTCTTCTTCTCCTTCACAGGCTACAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

26.22

Weight (kDa)

6.21

Isoelectric Point (pI)

27.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
AatII GACGTC 1 cut(s) 33
AccBSI CCGCTC 1 cut(s) 12
AciI CCGC 3 cut(s) 12, 54, 454
AclWI GGATC 2 cut(s) 384, 532
AcsI RAATTY 2 cut(s) 151, 282
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 521
AgsI TTSAA 5 cut(s) 277, 346, 389, 419, 596
AhlI ACTAGT 1 cut(s) 128
AjnI CCWGG 2 cut(s) 254, 498
AlwI GGATC 2 cut(s) 384, 532
AoxI GGCC 2 cut(s) 310, 392
ApoI RAATTY 2 cut(s) 151, 282
AspS9I GGNCC 4 cut(s) 392, 451, 529, 606
AsuNHI GCTAGC 1 cut(s) 620
AvaII GGWCC 3 cut(s) 451, 529, 606
BarI GAAGNNNNNNTAC 2 cut(s) 218, 250
BbsI GAAGAC 3 cut(s) 33, 202, 226
BccI CCATC 1 cut(s) 321
BciT130I CCWGG 2 cut(s) 256, 500
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 3 cut(s) 129, 548, 621
BglII AGATCT 1 cut(s) 80
Bme1390I CCNGG 2 cut(s) 256, 500
Bme18I GGWCC 3 cut(s) 451, 529, 606
BmgT120I GGNCC 4 cut(s) 392, 451, 529, 606
BmiI GGNNCC 2 cut(s) 185, 531
BmrFI CCNGG 2 cut(s) 256, 500
BmtI GCTAGC 1 cut(s) 624
BoxI GACNNNNGTC 1 cut(s) 500
BpiI GAAGAC 3 cut(s) 33, 202, 226
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 4 cut(s) 254, 460, 498, 561
Bsc4I CCNNNNNNNGG 1 cut(s) 521
Bse1I ACTGG 1 cut(s) 650
BseBI CCWGG 2 cut(s) 256, 500
BseDI CCNNGG 4 cut(s) 254, 460, 498, 561
BseGI GGATG 1 cut(s) 613
BseLI CCNNNNNNNGG 1 cut(s) 521
BseNI ACTGG 1 cut(s) 650
BseRI GAGGAG 1 cut(s) 371
BshFI GGCC 2 cut(s) 312, 394
BsiSI CCGG 1 cut(s) 617
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 521
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 2 cut(s) 312, 394
Bsp1407I TGTACA 1 cut(s) 225
Bsp143I GATC 3 cut(s) 80, 376, 524
Bsp19I CCATGG 1 cut(s) 561
BspACI CCGC 3 cut(s) 12, 54, 454
BspANI GGCC 2 cut(s) 312, 394
BspLI GGNNCC 2 cut(s) 185, 531
BspOI GCTAGC 1 cut(s) 624
BspPI GGATC 2 cut(s) 384, 532
BsrBI CCGCTC 1 cut(s) 12
BsrGI TGTACA 1 cut(s) 225
BsrI ACTGG 1 cut(s) 650
BssECI CCNNGG 4 cut(s) 254, 460, 498, 561
BssMI GATC 3 cut(s) 80, 376, 524
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 2 cut(s) 460, 561
Bst2UI CCWGG 2 cut(s) 256, 500
Bst4CI ACNGT 3 cut(s) 112, 232, 447
Bst6I CTCTTC 1 cut(s) 661
BstACI GRCGYC 1 cut(s) 30
BstAUI TGTACA 1 cut(s) 225
BstC8I GCNNGC 2 cut(s) 622, 626
BstDEI CTNAG 1 cut(s) 492
BstDSI CCRYGG 1 cut(s) 561
BstF5I GGATG 1 cut(s) 613
BstKTI GATC 3 cut(s) 83, 379, 527
BstMBI GATC 3 cut(s) 80, 376, 524
BstMWI GCNNNNNNNGC 1 cut(s) 462
BstNI CCWGG 2 cut(s) 256, 500
BstNSI RCATGY 1 cut(s) 628
BstPAI GACNNNNGTC 1 cut(s) 500
BstSCI CCNGG 2 cut(s) 254, 498
BstV2I GAAGAC 3 cut(s) 33, 202, 226
BstX2I RGATCY 2 cut(s) 80, 376
BstYI RGATCY 2 cut(s) 80, 376
BsuRI GGCC 2 cut(s) 312, 394
BtgI CCRYGG 1 cut(s) 561
BtsCI GGATG 1 cut(s) 613
Cac8I GCNNGC 2 cut(s) 622, 626
Cfr13I GGNCC 4 cut(s) 392, 451, 529, 606
Csp6I GTAC 1 cut(s) 226
CviAII CATG 5 cut(s) 296, 362, 422, 562, 625
CviJI RGCY 7 cut(s) 312, 394, 490, 575, 620, 635, 674
CviKI_1 RGCY 7 cut(s) 312, 394, 490, 575, 620, 635, 674
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 492
DpnI GATC 3 cut(s) 82, 378, 526
DpnII GATC 3 cut(s) 80, 376, 524
DrdI GACNNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 83
Eam1104I CTCTTC 1 cut(s) 661
EarI CTCTTC 1 cut(s) 661
Eco130I CCWWGG 2 cut(s) 460, 561
Eco147I AGGCCT 1 cut(s) 312
Eco47I GGWCC 3 cut(s) 451, 529, 606
EcoRII CCWGG 2 cut(s) 254, 498
EcoT14I CCWWGG 2 cut(s) 460, 561
ErhI CCWWGG 2 cut(s) 460, 561
FaeI CATG 5 cut(s) 299, 365, 425, 565, 628
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FaqI GGGAC 1 cut(s) 89
FatI CATG 5 cut(s) 295, 361, 421, 561, 624
FauI CCCGC 1 cut(s) 5
FokI GGATG 1 cut(s) 600
FspBI CTAG 3 cut(s) 129, 548, 621
HaeIII GGCC 2 cut(s) 312, 394
HapII CCGG 1 cut(s) 617
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 5 cut(s) 299, 365, 425, 565, 628
HpaII CCGG 1 cut(s) 617
Hpy166II GTNNAC 3 cut(s) 59, 228, 606
Hpy188I TCNGA 2 cut(s) 148, 529
Hpy8I GTNNAC 3 cut(s) 59, 228, 606
HpyAV CCTTC 1 cut(s) 675
HpyCH4III ACNGT 3 cut(s) 112, 232, 447
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 3 cut(s) 295, 482, 628
HpyF10VI GCNNNNNNNGC 1 cut(s) 462
HpyF3I CTNAG 1 cut(s) 492
HpySE526I ACGT 1 cut(s) 30
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 5 cut(s) 299, 365, 425, 565, 628
Kzo9I GATC 3 cut(s) 80, 376, 524
LmnI GCTCC 1 cut(s) 9
MaeI CTAG 3 cut(s) 129, 548, 621
MaeII ACGT 1 cut(s) 30
MalI GATC 3 cut(s) 82, 378, 526
MbiI CCGCTC 1 cut(s) 12
MboI GATC 3 cut(s) 80, 376, 524
MboII GAAGA 6 cut(s) 38, 202, 226, 503, 648, 651
MflI RGATCY 2 cut(s) 80, 376
MluCI AATT 6 cut(s) 115, 151, 282, 397, 540, 590
MmeI TCCRAC 2 cut(s) 429, 666
MnlI CCTC 8 cut(s) 252, 302, 323, 324, 327, 392, 543, 664
MseI TTAA 4 cut(s) 114, 195, 336, 438
MspI CCGG 1 cut(s) 617
MspR9I CCNGG 2 cut(s) 256, 500
MvaI CCWGG 2 cut(s) 256, 500
MwoI GCNNNNNNNGC 1 cut(s) 462
NcoI CCATGG 1 cut(s) 561
NdeII GATC 3 cut(s) 80, 376, 524
NheI GCTAGC 1 cut(s) 620
NlaIII CATG 5 cut(s) 299, 365, 425, 565, 628
NlaIV GGNNCC 2 cut(s) 185, 531
NspI RCATGY 1 cut(s) 628
PaeI GCATGC 1 cut(s) 628
PceI AGGCCT 1 cut(s) 312
PshAI GACNNNNGTC 1 cut(s) 500
Psp6I CCWGG 2 cut(s) 254, 498
PspGI CCWGG 2 cut(s) 254, 498
PspN4I GGNNCC 2 cut(s) 185, 531
PspPI GGNCC 4 cut(s) 392, 451, 529, 606
PsuI RGATCY 2 cut(s) 80, 376
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SaqAI TTAA 4 cut(s) 114, 195, 336, 438
Sau3AI GATC 3 cut(s) 80, 376, 524
Sau96I GGNCC 4 cut(s) 392, 451, 529, 606
ScrFI CCNGG 2 cut(s) 256, 500
SetI ASST 5 cut(s) 33, 342, 432, 504, 656
SinI GGWCC 3 cut(s) 451, 529, 606
SpeI ACTAGT 1 cut(s) 128
SphI GCATGC 1 cut(s) 628
Sse9I AATT 6 cut(s) 115, 151, 282, 397, 540, 590
SseBI AGGCCT 1 cut(s) 312
SsiI CCGC 3 cut(s) 12, 54, 454
SspMI CTAG 3 cut(s) 129, 548, 621
StuI AGGCCT 1 cut(s) 312
StyD4I CCNGG 2 cut(s) 254, 498
StyI CCWWGG 2 cut(s) 460, 561
TaaI ACNGT 3 cut(s) 112, 232, 447
TaiI ACGT 1 cut(s) 33
TaqI TCGA 1 cut(s) 535
TasI AATT 6 cut(s) 115, 151, 282, 397, 540, 590
TatI WGTACW 1 cut(s) 225
Tru1I TTAA 4 cut(s) 114, 195, 336, 438
Tru9I TTAA 4 cut(s) 114, 195, 336, 438
TspDTI ATGAA 2 cut(s) 312, 497
TspGWI ACGGA 1 cut(s) 22
VpaK11BI GGWCC 3 cut(s) 451, 529, 606
XapI RAATTY 2 cut(s) 151, 282
XceI RCATGY 1 cut(s) 628
XcmI CCANNNNNNNNNTGG 2 cut(s) 402, 568
XspI CTAG 3 cut(s) 129, 548, 621
ZraI GACGTC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.