RLG00000028973

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000147
Physical Location & Seq
Reverse (-)
30916744 .. 30917772
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028973

Sequence Viewer

Length: 933 bp
ATGAAACCCTCTTTGAGTGCTGCTCCTTTTGTGGCAGATTCGATCACCCTCAAGGCGGCTGTCCAGCAAAAGGCTTCTAAAAGAAACTTTCTCATGTTTCCAAGGAATTCAAATGAGCCCCAGAGTCTCCCATCTGCTTCTTCTGTTGCAGGACATGCTGTAAGTCGCATCCCAAGTAGTACCTTGTTGGTGTTTCCCAAAGTTCGTGGTCCTACATCTACTGGTCATGGTAATGCGTCCTACACTAATAATGATAATGTCTCATTCACTGGTTCTGGAAGAAGGAATGGTGCAAGACAAGGAGGCTCTTTTAGAGCTCGTGCAGATGGAAATCCTATTCCAGTTGAAGTCCATGGTCCTATTCTAGAGGATGATGGTAATAATTTGGCTGCAGGTGATGAGGAAATGAATGAAAATATTCCTATGCAGAACTTCGATGATCAGGTTCTTCAAGAACAAGCAGGACTTATGGAGAATGCCAATGATGGAGTAAGCTCACACTCATCTCAATCTATCCTCATTAATACATCAGATGATACACATTCCATGTCTTACGATGATTTATCTTCTATTGATTCTGCTATATCTGCTTTAACTTACTCATCTATAGACCCAGATTCTGATTATGATCCAGAACAAGCCCCTTATCCAGATTTTCTTCAAGCTCTTACACATTCTCTTGCTGATAATAACCTTTCTTTGAATAATCAGGATAATGCTTTAGCTACTGGTTCTACTGGACAAACAAATAACTCTGGATCTGATAATAACGAATTTGTTCCTGCTGTGTCTAATCCTATGAATAGTCAAGATCATGAAGCAGATAATATGCAGGATATCTCTGGGCCTCTTTTCCATAGTCCTAGGAAGAGAGCTCGAGACTATATGGAAGAGTCCAATGTAGGCTCTTCTTCCCCTAGTACTTCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

311

Amino Acids

33.01

Weight (kDa)

4.49

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 383
Acc36I ACCTGC 1 cut(s) 383
AciI CCGC 1 cut(s) 56
AclWI GGATC 2 cut(s) 623, 766
AcsI RAATTY 2 cut(s) 106, 773
AfaI GTAC 2 cut(s) 181, 922
AfiI CCNNNNNNNGG 2 cut(s) 55, 70
AgsI TTSAA 5 cut(s) 111, 347, 452, 662, 703
AluBI AGCT 5 cut(s) 317, 495, 665, 725, 875
AluI AGCT 5 cut(s) 317, 495, 665, 725, 875
Alw21I GWGCWC 2 cut(s) 319, 877
Alw26I GTCTC 3 cut(s) 131, 265, 873
AlwI GGATC 2 cut(s) 623, 766
AlwNI CAGNNNCTG 1 cut(s) 620
Ama87I CYCGRG 1 cut(s) 876
AoxI GGCC 1 cut(s) 845
ApeKI GCWGC 2 cut(s) 20, 389
ApoI RAATTY 2 cut(s) 106, 773
AseI ATTAAT 1 cut(s) 522
Asp700I GAANNNNTTC 2 cut(s) 417, 777
AspA2I CCTAGG 1 cut(s) 863
AspS9I GGNCC 3 cut(s) 209, 356, 845
AsuHPI GGTGA 2 cut(s) 37, 407
AvaI CYCGRG 1 cut(s) 876
AvaII GGWCC 2 cut(s) 209, 356
AvrII CCTAGG 1 cut(s) 863
BanII GRGCYC 3 cut(s) 120, 319, 877
BauI CACGAG 1 cut(s) 318
Bbv12I GWGCWC 2 cut(s) 319, 877
BbvI GCAGC 2 cut(s) 7, 376
BccI CCATC 4 cut(s) 139, 320, 368, 479
BclI TGATCA 1 cut(s) 439
BcoDI GTCTC 3 cut(s) 131, 265, 873
BfaI CTAG 3 cut(s) 365, 864, 918
BfmI CTRYAG 2 cut(s) 390, 606
BfuAI ACCTGC 1 cut(s) 383
BisI GCNGC 3 cut(s) 21, 57, 390
BlnI CCTAGG 1 cut(s) 863
BlsI GCNGC 3 cut(s) 22, 58, 391
BmcAI AGTACT 1 cut(s) 922
Bme18I GGWCC 2 cut(s) 209, 356
BmeT110I CYCGRG 1 cut(s) 876
BmgT120I GGNCC 3 cut(s) 209, 356, 845
BmsI GCATC 1 cut(s) 177
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BpuEI CTTGAG 1 cut(s) 35
BsaBI GATNNNNATC 2 cut(s) 330, 627
BsaJI CCNNGG 3 cut(s) 101, 352, 863
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 70
Bse1I ACTGG 5 cut(s) 226, 274, 341, 733, 742
Bse8I GATNNNNATC 2 cut(s) 330, 627
BseDI CCNNGG 3 cut(s) 101, 352, 863
BseGI GGATG 2 cut(s) 168, 376
BseJI GATNNNNATC 2 cut(s) 330, 627
BseLI CCNNNNNNNGG 2 cut(s) 55, 70
BseNI ACTGG 5 cut(s) 226, 274, 341, 733, 742
BseXI GCAGC 2 cut(s) 7, 376
BsgI GTGCAG 1 cut(s) 342
BshFI GGCC 1 cut(s) 847
BsiHKAI GWGCWC 2 cut(s) 319, 877
BsiHKCI CYCGRG 1 cut(s) 876
BslI CCNNNNNNNGG 2 cut(s) 55, 70
BsmAI GTCTC 3 cut(s) 131, 265, 873
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 1 cut(s) 847
BsoBI CYCGRG 1 cut(s) 876
Bsp1286I GDGCHC 3 cut(s) 120, 319, 877
Bsp143I GATC 5 cut(s) 42, 439, 628, 758, 811
Bsp19I CCATGG 1 cut(s) 352
BspACI CCGC 1 cut(s) 56
BspANI GGCC 1 cut(s) 847
BspHI TCATGA 1 cut(s) 814
BspMAI CTGCAG 1 cut(s) 394
BspMI ACCTGC 1 cut(s) 383
BspPI GGATC 2 cut(s) 623, 766
BspQI GCTCTTC 1 cut(s) 913
BsrI ACTGG 5 cut(s) 226, 274, 341, 733, 742
BssECI CCNNGG 3 cut(s) 101, 352, 863
BssMI GATC 5 cut(s) 42, 439, 628, 758, 811
BssSI CACGAG 1 cut(s) 318
BssT1I CCWWGG 3 cut(s) 101, 352, 863
Bst2BI CACGAG 1 cut(s) 318
Bst6I CTCTTC 3 cut(s) 863, 885, 913
BstAPI GCANNNNNTGC 1 cut(s) 155
BstDSI CCRYGG 1 cut(s) 352
BstF5I GGATG 2 cut(s) 168, 376
BstKTI GATC 5 cut(s) 45, 442, 631, 761, 814
BstMAI GTCTC 3 cut(s) 131, 265, 873
BstMBI GATC 5 cut(s) 42, 439, 628, 758, 811
BstMWI GCNNNNNNNGC 2 cut(s) 155, 587
BstNSI RCATGY 1 cut(s) 158
BstSFI CTRYAG 2 cut(s) 390, 606
BstV1I GCAGC 2 cut(s) 7, 376
BstX2I RGATCY 1 cut(s) 758
BstYI RGATCY 1 cut(s) 758
BsuRI GGCC 1 cut(s) 847
BtgI CCRYGG 1 cut(s) 352
BtsCI GGATG 2 cut(s) 168, 376
BtsIMutI CAGTG 1 cut(s) 267
BveI ACCTGC 1 cut(s) 383
CaiI CAGNNNCTG 1 cut(s) 620
CciI TCATGA 1 cut(s) 814
Cfr13I GGNCC 3 cut(s) 209, 356, 845
CseI GACGC 1 cut(s) 225
Csp6I GTAC 2 cut(s) 180, 921
CspCI CAANNNNNGTGG 2 cut(s) 187, 222
CviAII CATG 7 cut(s) 94, 155, 227, 353, 547, 815, 930
CviQI GTAC 2 cut(s) 180, 921
DpnI GATC 5 cut(s) 44, 441, 630, 760, 813
DpnII GATC 5 cut(s) 42, 439, 628, 758, 811
Eam1104I CTCTTC 3 cut(s) 863, 885, 913
EarI CTCTTC 3 cut(s) 863, 885, 913
Ecl136II GAGCTC 2 cut(s) 317, 875
Eco130I CCWWGG 3 cut(s) 101, 352, 863
Eco24I GRGCYC 3 cut(s) 120, 319, 877
Eco32I GATATC 1 cut(s) 838
Eco47I GGWCC 2 cut(s) 209, 356
Eco53kI GAGCTC 2 cut(s) 317, 875
Eco88I CYCGRG 1 cut(s) 876
EcoICRI GAGCTC 2 cut(s) 317, 875
EcoRI GAATTC 1 cut(s) 106
EcoRV GATATC 1 cut(s) 838
EcoT14I CCWWGG 3 cut(s) 101, 352, 863
EcoT38I GRGCYC 3 cut(s) 120, 319, 877
ErhI CCWWGG 3 cut(s) 101, 352, 863
FaeI CATG 7 cut(s) 97, 158, 230, 356, 550, 818, 933
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FatI CATG 7 cut(s) 93, 154, 226, 352, 546, 814, 929
FbaI TGATCA 1 cut(s) 439
Fnu4HI GCNGC 3 cut(s) 21, 57, 390
FokI GGATG 2 cut(s) 155, 383
FriOI GRGCYC 3 cut(s) 120, 319, 877
Fsp4HI GCNGC 3 cut(s) 21, 57, 390
FspBI CTAG 3 cut(s) 365, 864, 918
GluI GCNGC 3 cut(s) 21, 57, 390
HaeIII GGCC 1 cut(s) 847
HgaI GACGC 1 cut(s) 225
Hin1II CATG 7 cut(s) 97, 158, 230, 356, 550, 818, 933
HinfI GANTC 5 cut(s) 38, 124, 575, 617, 893
HphI GGTGA 2 cut(s) 37, 407
Hpy188I TCNGA 3 cut(s) 532, 622, 763
HpyAV CCTTC 1 cut(s) 276
HpyCH4V TGCA 6 cut(s) 149, 293, 323, 392, 427, 832
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 587
Hsp92II CATG 7 cut(s) 97, 158, 230, 356, 550, 818, 933
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 5 cut(s) 42, 439, 628, 758, 811
LguI GCTCTTC 1 cut(s) 913
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 2 cut(s) 7, 376
LweI GCATC 1 cut(s) 177
MaeI CTAG 3 cut(s) 365, 864, 918
MalI GATC 5 cut(s) 44, 441, 630, 760, 813
MboI GATC 5 cut(s) 42, 439, 628, 758, 811
MboII GAAGA 9 cut(s) 132, 291, 440, 558, 650, 880, 900, 902, 903
MflI RGATCY 1 cut(s) 758
MhlI GDGCHC 3 cut(s) 120, 319, 877
MluCI AATT 3 cut(s) 106, 382, 773
MlyI GAGTC 2 cut(s) 133, 902
MnlI CCTC 7 cut(s) 19, 59, 296, 361, 394, 527, 858
MroXI GAANNNNTTC 2 cut(s) 417, 777
MseI TTAA 2 cut(s) 522, 593
MslI CAYNNNNRTG 1 cut(s) 231
Mva1269I GAATGC 1 cut(s) 481
MwoI GCNNNNNNNGC 2 cut(s) 155, 587
NcoI CCATGG 1 cut(s) 352
NdeII GATC 5 cut(s) 42, 439, 628, 758, 811
NlaIII CATG 7 cut(s) 97, 158, 230, 356, 550, 818, 933
NspI RCATGY 1 cut(s) 158
PaeR7I CTCGAG 1 cut(s) 876
PagI TCATGA 1 cut(s) 814
PaqCI CACCTGC 1 cut(s) 383
PciSI GCTCTTC 1 cut(s) 913
PctI GAATGC 1 cut(s) 481
PdmI GAANNNNTTC 2 cut(s) 417, 777
PfeI GAWTC 3 cut(s) 38, 575, 617
PkrI GCNGC 3 cut(s) 22, 58, 391
PleI GAGTC 2 cut(s) 132, 901
PpsI GAGTC 2 cut(s) 132, 901
PshBI ATTAAT 1 cut(s) 522
Psp124BI GAGCTC 2 cut(s) 319, 877
PspPI GGNCC 3 cut(s) 209, 356, 845
PstI CTGCAG 1 cut(s) 394
PstNI CAGNNNCTG 1 cut(s) 620
PsuI RGATCY 1 cut(s) 758
RsaI GTAC 2 cut(s) 181, 922
RsaNI GTAC 2 cut(s) 180, 921
RseI CAYNNNNRTG 1 cut(s) 231
SacI GAGCTC 2 cut(s) 319, 877
SapI GCTCTTC 1 cut(s) 913
SaqAI TTAA 2 cut(s) 522, 593
SatI GCNGC 3 cut(s) 21, 57, 390
Sau3AI GATC 5 cut(s) 42, 439, 628, 758, 811
Sau96I GGNCC 3 cut(s) 209, 356, 845
ScaI AGTACT 1 cut(s) 922
SchI GAGTC 2 cut(s) 133, 902
SduI GDGCHC 3 cut(s) 120, 319, 877
SetI ASST 9 cut(s) 185, 319, 397, 447, 497, 667, 696, 727, 877
SfaNI GCATC 1 cut(s) 177
SfcI CTRYAG 2 cut(s) 390, 606
Sfr274I CTCGAG 1 cut(s) 876
SinI GGWCC 2 cut(s) 209, 356
SlaI CTCGAG 1 cut(s) 876
SmiMI CAYNNNNRTG 1 cut(s) 231
SmlI CTYRAG 2 cut(s) 50, 876
SmoI CTYRAG 2 cut(s) 50, 876
Sse9I AATT 3 cut(s) 106, 382, 773
SsiI CCGC 1 cut(s) 56
SspI AATATT 1 cut(s) 418
SspMI CTAG 3 cut(s) 365, 864, 918
SstI GAGCTC 2 cut(s) 319, 877
StyI CCWWGG 3 cut(s) 101, 352, 863
TaqI TCGA 3 cut(s) 41, 435, 877
TasI AATT 3 cut(s) 106, 382, 773
TatI WGTACW 1 cut(s) 920
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 3 cut(s) 38, 575, 617
Tru1I TTAA 2 cut(s) 522, 593
Tru9I TTAA 2 cut(s) 522, 593
TscAI CASTG 1 cut(s) 274
TseI GCWGC 2 cut(s) 20, 389
TspDTI ATGAA 5 cut(s) 17, 422, 426, 815, 831
TspRI CASTG 1 cut(s) 274
VpaK11BI GGWCC 2 cut(s) 209, 356
VspI ATTAAT 1 cut(s) 522
XapI RAATTY 2 cut(s) 106, 773
XbaI TCTAGA 1 cut(s) 364
XceI RCATGY 1 cut(s) 158
XhoI CTCGAG 1 cut(s) 876
XmaJI CCTAGG 1 cut(s) 863
XmnI GAANNNNTTC 2 cut(s) 417, 777
XspI CTAG 3 cut(s) 365, 864, 918
ZrmI AGTACT 1 cut(s) 922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.