FvH4_4g06792

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000147
Physical Location & Seq
Forward (+)
6123164 .. 6124063
900 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06792.t1

Sequence Viewer

Length: 900 bp
ATGGAGGCCAATGATCTAATTGATATTCAATTCAAAGGGCAGAAGTATACTTGGAGTAACAATTGGCCGGGTGGAGGTCTCATTAAAATCAGATTGGATCGGGGTATTGTCAACACTAAATGGTTAGAAAGATGGCCGGATACTAGTATCTTTCATTTTCCTAAGTTGGGTTCAGATCACTGCCCACTTATTTTTGACACTGAACCACCTTTGGATCGAGGTCCAAAGTCTTTTAAGTTTGAACCATCTTGGGTTGACTATGCAGAATGCAAAGAAGTGATTTCCAAGGCTTGGGATCTGCCTTGTGATGGTACCAGGGCCGTTCAATGGGTTGGTAAGATTGATCGATGTGCAAGAGACTTATCTAGCTGGAGTAAGTTAAAGTTTTCAAATAACAGAAAGACTATTAATAGTCATATTGAGGAACTCCAATTGCTTCAGGACTCTTCCTTTGAGGATGATAGAAGAAGAGCTGATACTCTTATTGCGGAGGTGGTAGACTTATGGGATAAAGAAGAATGTTACTGGGCACAAAGATCCAGAGTGAATTGGTTGAAAGCAGGGGATAAGAACACAAAATTCTTCCATATTACTGCAGTCCACCGACGACAACGGAACAGAATACTCCGGCTTCAATCTCAGGAGGAATTATGGCTGAATAAGGAAGCAGACATTAGAGATGAGATTGAGAGCTACTATAAGAATATTTTTACTTGTAGTGGACCAAGAGATTGGAGTGATGCAGTTTCAGCCATCAGACCAGTTGTTACTGAGGAGATGAACCATAATTTATCTATGCCTCTCGGTGAGGAAGAAATTAAGGCTGCTGCCTTTGAAATGGGGGCTAACAAAGCCCCAGGCCCTGATGGTTTCCATGGGATTTTTTATCAGAAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

300

Amino Acids

34.9

Weight (kDa)

6.04

Isoelectric Point (pI)

51.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 311
AccB1I GGYRCC 1 cut(s) 311
AccB7I CCANNNNNTGG 1 cut(s) 291
AccI GTMKAC 2 cut(s) 47, 498
AciI CCGC 1 cut(s) 488
AclWI GGATC 4 cut(s) 105, 222, 303, 531
AcoI YGGCCR 2 cut(s) 65, 134
AcsI RAATTY 1 cut(s) 578
AcuI CTGAAG 1 cut(s) 422
AfaI GTAC 1 cut(s) 313
AfiI CCNNNNNNNGG 5 cut(s) 74, 167, 291, 308, 327
AgsI TTSAA 8 cut(s) 29, 34, 242, 326, 390, 556, 635, 836
AhlI ACTAGT 1 cut(s) 143
AjnI CCWGG 2 cut(s) 314, 856
AluBI AGCT 3 cut(s) 369, 473, 693
AluI AGCT 3 cut(s) 369, 473, 693
Alw26I GTCTC 2 cut(s) 83, 351
AlwI GGATC 4 cut(s) 105, 222, 303, 531
AlwNI CAGNNNCTG 1 cut(s) 863
AoxI GGCC 5 cut(s) 6, 65, 134, 318, 859
ApeKI GCWGC 2 cut(s) 824, 827
ApoI RAATTY 1 cut(s) 578
ArsI GACNNNNNNTTYG 2 cut(s) 434, 466
AseI ATTAAT 1 cut(s) 408
Asp718I GGTACC 1 cut(s) 311
AspS9I GGNCC 4 cut(s) 221, 318, 722, 860
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 818
AvaII GGWCC 2 cut(s) 221, 722
BaeGI GKGCMC 1 cut(s) 532
BanI GGYRCC 1 cut(s) 311
BarI GAAGNNNNNNTAC 2 cut(s) 460, 492
BbvI GCAGC 2 cut(s) 811, 814
BccI CCATC 5 cut(s) 126, 253, 302, 761, 860
BceAI ACGGC 1 cut(s) 305
BciT130I CCWGG 2 cut(s) 316, 858
BciVI GTATCC 1 cut(s) 133
BcnI CCSGG 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 83, 351
BcuI ACTAGT 1 cut(s) 143
BfaI CTAG 2 cut(s) 144, 366
BfmI CTRYAG 1 cut(s) 594
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 2 cut(s) 825, 828
BlsI GCNGC 2 cut(s) 826, 829
Bme1390I CCNGG 3 cut(s) 69, 316, 858
Bme18I GGWCC 2 cut(s) 221, 722
BmgT120I GGNCC 4 cut(s) 221, 318, 722, 860
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 3 cut(s) 69, 316, 858
BmrI ACTGGG 1 cut(s) 535
BmsI GCATC 1 cut(s) 730
BmuI ACTGGG 1 cut(s) 535
BpmI CTGGAG 1 cut(s) 391
BpuMI CCSGG 1 cut(s) 69
Bsa29I ATCGAT 1 cut(s) 346
BsaI GGTCTC 1 cut(s) 83
BsaJI CCNNGG 4 cut(s) 285, 315, 856, 874
Bsc4I CCNNNNNNNGG 5 cut(s) 74, 167, 291, 308, 327
Bse1I ACTGG 2 cut(s) 530, 761
BseBI CCWGG 2 cut(s) 316, 858
BseCI ATCGAT 1 cut(s) 346
BseDI CCNNGG 4 cut(s) 285, 315, 856, 874
BseGI GGATG 1 cut(s) 463
BseLI CCNNNNNNNGG 5 cut(s) 74, 167, 291, 308, 327
BseMII CTCAG 2 cut(s) 653, 762
BseNI ACTGG 2 cut(s) 530, 761
BseRI GAGGAG 1 cut(s) 788
BseSI GKGCMC 1 cut(s) 532
BseXI GCAGC 2 cut(s) 811, 814
BshFI GGCC 5 cut(s) 8, 67, 136, 320, 861
BshNI GGYRCC 1 cut(s) 311
BshVI ATCGAT 1 cut(s) 346
BsiSI CCGG 3 cut(s) 68, 137, 628
BslI CCNNNNNNNGG 5 cut(s) 74, 167, 291, 308, 327
BsmAI GTCTC 2 cut(s) 83, 351
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 5 cut(s) 8, 67, 136, 320, 861
Bso31I GGTCTC 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 532
Bsp143I GATC 7 cut(s) 13, 97, 175, 214, 295, 343, 536
Bsp19I CCATGG 1 cut(s) 874
BspACI CCGC 1 cut(s) 488
BspANI GGCC 5 cut(s) 8, 67, 136, 320, 861
BspCNI CTCAG 2 cut(s) 652, 763
BspDI ATCGAT 1 cut(s) 346
BspLI GGNNCC 1 cut(s) 313
BspMAI CTGCAG 1 cut(s) 598
BspPI GGATC 4 cut(s) 105, 222, 303, 531
BspQI GCTCTTC 1 cut(s) 463
BspT107I GGYRCC 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 83
BsrI ACTGG 2 cut(s) 530, 761
BssECI CCNNGG 4 cut(s) 285, 315, 856, 874
BssMI GATC 7 cut(s) 13, 97, 175, 214, 295, 343, 536
BssNAI GTATAC 1 cut(s) 48
BssT1I CCWWGG 2 cut(s) 285, 874
Bst1107I GTATAC 1 cut(s) 48
Bst2UI CCWGG 2 cut(s) 316, 858
Bst6I CTCTTC 2 cut(s) 451, 463
BstDEI CTNAG 3 cut(s) 162, 639, 771
BstDSI CCRYGG 1 cut(s) 874
BstF5I GGATG 1 cut(s) 463
BstKTI GATC 7 cut(s) 16, 100, 178, 217, 298, 346, 539
BstMAI GTCTC 2 cut(s) 83, 351
BstMBI GATC 7 cut(s) 13, 97, 175, 214, 295, 343, 536
BstMWI GCNNNNNNNGC 2 cut(s) 749, 851
BstNI CCWGG 2 cut(s) 316, 858
BstSCI CCNGG 3 cut(s) 67, 314, 856
BstSFI CTRYAG 1 cut(s) 594
BstSLI GKGCMC 1 cut(s) 532
BstV1I GCAGC 2 cut(s) 811, 814
BstX2I RGATCY 2 cut(s) 295, 536
BstXI CCANNNNNNTGG 1 cut(s) 732
BstYI RGATCY 2 cut(s) 295, 536
BstZ17I GTATAC 1 cut(s) 48
Bsu15I ATCGAT 1 cut(s) 346
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 5 cut(s) 8, 67, 136, 320, 861
BsuTUI ATCGAT 1 cut(s) 346
BtgI CCRYGG 1 cut(s) 874
BtsCI GGATG 1 cut(s) 463
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 2 cut(s) 178, 198
CaiI CAGNNNCTG 1 cut(s) 863
Cfr13I GGNCC 4 cut(s) 221, 318, 722, 860
ClaI ATCGAT 1 cut(s) 346
Csp6I GTAC 1 cut(s) 312
CviAII CATG 1 cut(s) 875
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 3 cut(s) 162, 639, 771
DpnI GATC 7 cut(s) 15, 99, 177, 216, 297, 345, 538
DpnII GATC 7 cut(s) 13, 97, 175, 214, 295, 343, 536
EaeI YGGCCR 2 cut(s) 65, 134
Eam1104I CTCTTC 2 cut(s) 451, 463
EarI CTCTTC 2 cut(s) 451, 463
Eco130I CCWWGG 2 cut(s) 285, 874
Eco31I GGTCTC 1 cut(s) 83
Eco47I GGWCC 2 cut(s) 221, 722
Eco57I CTGAAG 1 cut(s) 422
EcoO109I RGGNCCY 1 cut(s) 860
EcoRII CCWGG 2 cut(s) 314, 856
EcoT14I CCWWGG 2 cut(s) 285, 874
ErhI CCWWGG 2 cut(s) 285, 874
FaeI CATG 1 cut(s) 878
FatI CATG 1 cut(s) 874
FblI GTMKAC 2 cut(s) 47, 498
Fnu4HI GCNGC 2 cut(s) 825, 828
FokI GGATG 1 cut(s) 470
Fsp4HI GCNGC 2 cut(s) 825, 828
FspBI CTAG 2 cut(s) 144, 366
GluI GCNGC 2 cut(s) 825, 828
GsuI CTGGAG 1 cut(s) 391
HaeIII GGCC 5 cut(s) 8, 67, 136, 320, 861
HapII CCGG 3 cut(s) 68, 137, 628
Hin1II CATG 1 cut(s) 878
HincII GTYRAC 2 cut(s) 112, 256
HindII GTYRAC 2 cut(s) 112, 256
HinfI GANTC 1 cut(s) 443
HpaII CCGG 3 cut(s) 68, 137, 628
HphI GGTGA 1 cut(s) 818
Hpy166II GTNNAC 6 cut(s) 48, 112, 256, 499, 601, 722
Hpy188I TCNGA 4 cut(s) 92, 175, 758, 891
Hpy188III TCNNGA 3 cut(s) 440, 540, 641
Hpy8I GTNNAC 6 cut(s) 48, 112, 256, 499, 601, 722
Hpy99I CGWCG 1 cut(s) 609
HpyCH4V TGCA 5 cut(s) 263, 270, 353, 596, 743
HpyF10VI GCNNNNNNNGC 2 cut(s) 749, 851
HpyF3I CTNAG 3 cut(s) 162, 639, 771
Hsp92II CATG 1 cut(s) 878
KpnI GGTACC 1 cut(s) 315
Kzo9I GATC 7 cut(s) 13, 97, 175, 214, 295, 343, 536
LguI GCTCTTC 1 cut(s) 463
Lsp1109I GCAGC 2 cut(s) 811, 814
LweI GCATC 1 cut(s) 730
MaeI CTAG 2 cut(s) 144, 366
MaeIII GTNAC 3 cut(s) 56, 521, 766
MalI GATC 7 cut(s) 15, 99, 177, 216, 297, 345, 538
MboI GATC 7 cut(s) 13, 97, 175, 214, 295, 343, 536
MboII GAAGA 6 cut(s) 438, 477, 480, 527, 574, 824
MfeI CAATTG 2 cut(s) 61, 431
MflI RGATCY 2 cut(s) 295, 536
MhlI GDGCHC 1 cut(s) 532
MluCI AATT 9 cut(s) 18, 29, 61, 431, 547, 578, 647, 787, 816
MlyI GAGTC 1 cut(s) 437
MnlI CCTC 9 cut(s) 68, 212, 415, 448, 484, 637, 766, 802, 810
MseI TTAA 5 cut(s) 84, 234, 380, 408, 819
MspI CCGG 3 cut(s) 68, 137, 628
MspR9I CCNGG 3 cut(s) 69, 316, 858
MunI CAATTG 2 cut(s) 61, 431
Mva1269I GAATGC 1 cut(s) 272
MvaI CCWGG 2 cut(s) 316, 858
MwoI GCNNNNNNNGC 2 cut(s) 749, 851
NciI CCSGG 1 cut(s) 69
NcoI CCATGG 1 cut(s) 874
NdeII GATC 7 cut(s) 13, 97, 175, 214, 295, 343, 536
NlaIII CATG 1 cut(s) 878
NlaIV GGNNCC 1 cut(s) 313
PciSI GCTCTTC 1 cut(s) 463
PctI GAATGC 1 cut(s) 272
PflMI CCANNNNNTGG 1 cut(s) 291
PkrI GCNGC 2 cut(s) 826, 829
PleI GAGTC 1 cut(s) 437
PpsI GAGTC 1 cut(s) 437
PshBI ATTAAT 1 cut(s) 408
Psp6I CCWGG 2 cut(s) 314, 856
PspGI CCWGG 2 cut(s) 314, 856
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 4 cut(s) 221, 318, 722, 860
PstI CTGCAG 1 cut(s) 598
PstNI CAGNNNCTG 1 cut(s) 863
PsuI RGATCY 2 cut(s) 295, 536
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
SapI GCTCTTC 1 cut(s) 463
SaqAI TTAA 5 cut(s) 84, 234, 380, 408, 819
SatI GCNGC 2 cut(s) 825, 828
Sau3AI GATC 7 cut(s) 13, 97, 175, 214, 295, 343, 536
Sau96I GGNCC 4 cut(s) 221, 318, 722, 860
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 3 cut(s) 69, 316, 858
SduI GDGCHC 1 cut(s) 532
SetI ASST 7 cut(s) 79, 211, 223, 371, 475, 495, 695
SfaNI GCATC 1 cut(s) 730
SfcI CTRYAG 1 cut(s) 594
SinI GGWCC 2 cut(s) 221, 722
SpeI ACTAGT 1 cut(s) 143
Sse9I AATT 9 cut(s) 18, 29, 61, 431, 547, 578, 647, 787, 816
SsiI CCGC 1 cut(s) 488
SspI AATATT 1 cut(s) 706
SspMI CTAG 2 cut(s) 144, 366
StyD4I CCNGG 3 cut(s) 67, 314, 856
StyI CCWWGG 2 cut(s) 285, 874
TaqI TCGA 2 cut(s) 217, 346
TasI AATT 9 cut(s) 18, 29, 61, 431, 547, 578, 647, 787, 816
Tru1I TTAA 5 cut(s) 84, 234, 380, 408, 819
Tru9I TTAA 5 cut(s) 84, 234, 380, 408, 819
TscAI CASTG 2 cut(s) 185, 205
TseI GCWGC 2 cut(s) 824, 827
TspDTI ATGAA 2 cut(s) 143, 794
TspGWI ACGGA 1 cut(s) 628
TspRI CASTG 2 cut(s) 185, 205
Van91I CCANNNNNTGG 1 cut(s) 291
VpaK11BI GGWCC 2 cut(s) 221, 722
VspI ATTAAT 1 cut(s) 408
XapI RAATTY 1 cut(s) 578
XmiI GTMKAC 2 cut(s) 47, 498
XspI CTAG 2 cut(s) 144, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.