Rmu_sc0002082.1_g000033

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002082.1
OG0000147
Physical Location & Seq
Reverse (-)
158721 .. 160868
2148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002082.1_g000033.1.cds

Sequence Viewer

Length: 861 bp
atgaatgagattttgagccaatgggagaaggaaggtggggtcccgtggagtacaaacaggaggaactaccttagatctttcttgaactttaatgccctactagatgtcagctttattggtcaaagcttcacctgggccaggaaggaaggaagtaccattgttctacaggacaggttggacagaggcttagtaaatgaaaattggttcattgcttggccggatacctcactaactcatatcacccgaattggatcggatcacaacctcatcctcctcagtacgaaccccactgcagataaaggccaggagtttgagactcaattcaagcttatttttaccggtacgggtgttagacaatggggaggggtgttcgataggatcataagccctgttactactgatatgaatcaagatctcattgctccgattactttggacgaggtaatgaaggctacgcatcagctaggggccctaataactccgggcccggatggcttccccggattgttttaccacaaatactggagcattgttcaaagggttgtgtgggcttcagcaaaggactttaaggatggtcggattgaaggctatcttaccaactctcatctccccaaatcagaatgcctttgtgccagaaagaatattaaagaaaacattttactagctaacgagtcttaccactacctcaagctaaaaagggatggagaaactcacgaactagggttgaaattggatatgaataaagcttatgatagggtggaatgggatttcttagaggctactctagttcgttttggctttcacagtattgtgaaggttatcgatcttcaggaagtttttgatgaggagaggaggaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

286

Amino Acids

33.01

Weight (kDa)

6.09

Isoelectric Point (pI)

38.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 259, 264, 386
AcoI YGGCCR 1 cut(s) 215
AcuI CTGAAG 2 cut(s) 537, 812
AfaI GTAC 4 cut(s) 52, 154, 280, 343
AfiI CCNNNNNNNGG 1 cut(s) 138
AgeI ACCGGT 1 cut(s) 338
AgsI TTSAA 5 cut(s) 85, 325, 536, 584, 727
AjnI CCWGG 3 cut(s) 131, 137, 303
AluBI AGCT 7 cut(s) 111, 126, 328, 463, 665, 691, 746
AluI AGCT 7 cut(s) 111, 126, 328, 463, 665, 691, 746
Alw26I GTCTC 1 cut(s) 308
AlwI GGATC 3 cut(s) 259, 264, 386
AoxI GGCC 5 cut(s) 135, 215, 301, 468, 484
ApaI GGGCCC 2 cut(s) 472, 488
AsiGI ACCGGT 1 cut(s) 338
AspS9I GGNCC 6 cut(s) 40, 135, 468, 469, 484, 485
AsuC2I CCSGG 3 cut(s) 483, 488, 501
AsuHPI GGTGA 2 cut(s) 121, 232
AvaII GGWCC 1 cut(s) 40
BaeGI GKGCMC 2 cut(s) 472, 488
BaeI ACNNNNGTAYC 2 cut(s) 333, 366
BanII GRGCYC 2 cut(s) 472, 488
BccI CCATC 3 cut(s) 485, 566, 695
BciT130I CCWGG 3 cut(s) 133, 139, 305
BciVI GTATCC 1 cut(s) 214
BcnI CCSGG 3 cut(s) 483, 488, 501
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 5 cut(s) 101, 464, 662, 719, 785
BfmI CTRYAG 2 cut(s) 164, 291
BfuI GTATCC 1 cut(s) 214
BglI GCCNNNNNGGC 1 cut(s) 492
BglII AGATCT 2 cut(s) 74, 412
Bme1390I CCNGG 6 cut(s) 133, 139, 305, 483, 488, 501
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 6 cut(s) 40, 135, 468, 469, 484, 485
BmiI GGNNCC 5 cut(s) 41, 42, 469, 470, 486
BmrFI CCNGG 6 cut(s) 133, 139, 305, 483, 488, 501
BmsI GCATC 1 cut(s) 466
BpmI CTGGAG 1 cut(s) 544
BpuEI CTTGAG 1 cut(s) 671
BpuMI CCSGG 3 cut(s) 483, 488, 501
Bsa29I ATCGAT 1 cut(s) 822
BsaBI GATNNNNATC 1 cut(s) 405
BsaJI CCNNGG 3 cut(s) 44, 132, 499
BsaWI WCCGGW 1 cut(s) 338
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse118I RCCGGY 1 cut(s) 338
Bse1I ACTGG 1 cut(s) 527
Bse3DI GCAATG 2 cut(s) 207, 417
Bse8I GATNNNNATC 1 cut(s) 405
BseBI CCWGG 3 cut(s) 133, 139, 305
BseCI ATCGAT 1 cut(s) 822
BseDI CCNNGG 3 cut(s) 44, 132, 499
BseGI GGATG 4 cut(s) 267, 496, 577, 706
BseJI GATNNNNATC 1 cut(s) 405
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMI GCAATG 2 cut(s) 207, 417
BseMII CTCAG 1 cut(s) 289
BseNI ACTGG 1 cut(s) 527
BseRI GAGGAG 2 cut(s) 263, 860
BseSI GKGCMC 2 cut(s) 472, 488
BshFI GGCC 5 cut(s) 137, 217, 303, 470, 486
BshTI ACCGGT 1 cut(s) 338
BshVI ATCGAT 1 cut(s) 822
BsiSI CCGG 5 cut(s) 218, 339, 482, 488, 501
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 308
BsmFI GGGAC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 626
BsnI GGCC 5 cut(s) 137, 217, 303, 470, 486
Bsp120I GGGCCC 2 cut(s) 468, 484
Bsp1286I GDGCHC 2 cut(s) 472, 488
Bsp143I GATC 6 cut(s) 74, 251, 256, 378, 412, 823
BspANI GGCC 5 cut(s) 137, 217, 303, 470, 486
BspCNI CTCAG 1 cut(s) 288
BspDI ATCGAT 1 cut(s) 822
BspLI GGNNCC 5 cut(s) 41, 42, 469, 470, 486
BspMAI CTGCAG 1 cut(s) 295
BspPI GGATC 3 cut(s) 259, 264, 386
BsrDI GCAATG 2 cut(s) 207, 417
BsrFI RCCGGY 1 cut(s) 338
BsrI ACTGG 1 cut(s) 527
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 3 cut(s) 44, 132, 499
BssMI GATC 6 cut(s) 74, 251, 256, 378, 412, 823
Bst2UI CCWGG 3 cut(s) 133, 139, 305
Bst4CI ACNGT 1 cut(s) 806
BstDEI CTNAG 4 cut(s) 71, 187, 275, 772
BstDSI CCRYGG 1 cut(s) 44
BstENI CCTNNNNNAGG 1 cut(s) 136
BstF5I GGATG 4 cut(s) 267, 496, 577, 706
BstKTI GATC 6 cut(s) 77, 254, 259, 381, 415, 826
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 6 cut(s) 74, 251, 256, 378, 412, 823
BstMWI GCNNNNNNNGC 1 cut(s) 492
BstNI CCWGG 3 cut(s) 133, 139, 305
BstSCI CCNGG 6 cut(s) 131, 137, 303, 481, 486, 499
BstSFI CTRYAG 2 cut(s) 164, 291
BstSLI GKGCMC 2 cut(s) 472, 488
BstX2I RGATCY 2 cut(s) 74, 412
BstYI RGATCY 2 cut(s) 74, 412
Bsu15I ATCGAT 1 cut(s) 822
BsuI GTATCC 1 cut(s) 214
BsuRI GGCC 5 cut(s) 137, 217, 303, 470, 486
BsuTUI ATCGAT 1 cut(s) 822
BtgI CCRYGG 1 cut(s) 44
BtsCI GGATG 4 cut(s) 267, 496, 577, 706
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 288
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 6 cut(s) 40, 135, 468, 469, 484, 485
ClaI ATCGAT 1 cut(s) 822
Csp6I GTAC 4 cut(s) 51, 153, 279, 342
CspAI ACCGGT 1 cut(s) 338
CviQI GTAC 4 cut(s) 51, 153, 279, 342
DdeI CTNAG 4 cut(s) 71, 187, 275, 772
DpnI GATC 6 cut(s) 76, 253, 258, 380, 414, 825
DpnII GATC 6 cut(s) 74, 251, 256, 378, 412, 823
EaeI YGGCCR 1 cut(s) 215
Eco24I GRGCYC 2 cut(s) 472, 488
Eco47I GGWCC 1 cut(s) 40
Eco57I CTGAAG 2 cut(s) 537, 812
EcoNI CCTNNNNNAGG 1 cut(s) 136
EcoO109I RGGNCCY 3 cut(s) 40, 468, 469
EcoRII CCWGG 3 cut(s) 131, 137, 303
EcoT38I GRGCYC 2 cut(s) 472, 488
FaiI YATR 5 cut(s) 237, 383, 404, 737, 750
FalI AAGNNNNNCTT 2 cut(s) 576, 608
FaqI GGGAC 1 cut(s) 26
FokI GGATG 4 cut(s) 254, 503, 584, 713
FriOI GRGCYC 2 cut(s) 472, 488
FspBI CTAG 5 cut(s) 101, 464, 662, 719, 785
GsuI CTGGAG 1 cut(s) 544
HaeIII GGCC 5 cut(s) 137, 217, 303, 470, 486
HapII CCGG 5 cut(s) 218, 339, 482, 488, 501
HindIII AAGCTT 3 cut(s) 124, 326, 744
HinfI GANTC 3 cut(s) 316, 406, 671
HpaII CCGG 5 cut(s) 218, 339, 482, 488, 501
HphI GGTGA 2 cut(s) 121, 232
Hpy188I TCNGA 4 cut(s) 256, 426, 579, 619
Hpy188III TCNNGA 4 cut(s) 82, 410, 713, 830
HpyAV CCTTC 7 cut(s) 22, 26, 136, 140, 442, 578, 808
HpyCH4III ACNGT 1 cut(s) 806
HpyCH4V TGCA 1 cut(s) 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 492
HpyF3I CTNAG 4 cut(s) 71, 187, 275, 772
KflI GGGWCCC 1 cut(s) 40
Kzo9I GATC 6 cut(s) 74, 251, 256, 378, 412, 823
LmnI GCTCC 2 cut(s) 427, 525
LweI GCATC 1 cut(s) 466
MaeI CTAG 5 cut(s) 101, 464, 662, 719, 785
MaeIII GTNAC 1 cut(s) 391
MalI GATC 6 cut(s) 76, 253, 258, 380, 414, 825
MboI GATC 6 cut(s) 74, 251, 256, 378, 412, 823
MboII GAAGA 1 cut(s) 818
MflI RGATCY 2 cut(s) 74, 412
MhlI GDGCHC 2 cut(s) 472, 488
MluCI AATT 4 cut(s) 199, 246, 320, 728
MlyI GAGTC 2 cut(s) 310, 680
MmeI TCCRAC 2 cut(s) 156, 557
MseI TTAA 3 cut(s) 90, 567, 645
MspI CCGG 5 cut(s) 218, 339, 482, 488, 501
MspR9I CCNGG 6 cut(s) 133, 139, 305, 483, 488, 501
Mva1269I GAATGC 1 cut(s) 626
MvaI CCWGG 3 cut(s) 133, 139, 305
MwoI GCNNNNNNNGC 1 cut(s) 492
NciI CCSGG 3 cut(s) 483, 488, 501
NdeII GATC 6 cut(s) 74, 251, 256, 378, 412, 823
NlaIV GGNNCC 5 cut(s) 41, 42, 469, 470, 486
PctI GAATGC 1 cut(s) 626
PfeI GAWTC 1 cut(s) 406
PinAI ACCGGT 1 cut(s) 338
PleI GAGTC 2 cut(s) 310, 679
PpsI GAGTC 2 cut(s) 310, 679
PpuMI RGGWCCY 1 cut(s) 40
Psp5II RGGWCCY 1 cut(s) 40
Psp6I CCWGG 3 cut(s) 131, 137, 303
PspGI CCWGG 3 cut(s) 131, 137, 303
PspN4I GGNNCC 5 cut(s) 41, 42, 469, 470, 486
PspOMI GGGCCC 2 cut(s) 468, 484
PspPI GGNCC 6 cut(s) 40, 135, 468, 469, 484, 485
PspPPI RGGWCCY 1 cut(s) 40
PstI CTGCAG 1 cut(s) 295
PsuI RGATCY 2 cut(s) 74, 412
RsaI GTAC 4 cut(s) 52, 154, 280, 343
RsaNI GTAC 4 cut(s) 51, 153, 279, 342
SaqAI TTAA 3 cut(s) 90, 567, 645
Sau3AI GATC 6 cut(s) 74, 251, 256, 378, 412, 823
Sau96I GGNCC 6 cut(s) 40, 135, 468, 469, 484, 485
SchI GAGTC 2 cut(s) 310, 680
ScrFI CCNGG 6 cut(s) 133, 139, 305, 483, 488, 501
SduI GDGCHC 2 cut(s) 472, 488
SfaNI GCATC 1 cut(s) 466
SfcI CTRYAG 2 cut(s) 164, 291
SinI GGWCC 1 cut(s) 40
SmlI CTYRAG 1 cut(s) 686
SmoI CTYRAG 1 cut(s) 686
Sse9I AATT 4 cut(s) 199, 246, 320, 728
SspI AATATT 1 cut(s) 643
SspMI CTAG 5 cut(s) 101, 464, 662, 719, 785
StyD4I CCNGG 6 cut(s) 131, 137, 303, 481, 486, 499
TaaI ACNGT 1 cut(s) 806
TaqI TCGA 2 cut(s) 372, 822
TasI AATT 4 cut(s) 199, 246, 320, 728
TatI WGTACW 1 cut(s) 50
TfiI GAWTC 1 cut(s) 406
Tru1I TTAA 3 cut(s) 90, 567, 645
Tru9I TTAA 3 cut(s) 90, 567, 645
TscAI CASTG 1 cut(s) 295
TspDTI ATGAA 6 cut(s) 17, 196, 210, 419, 461, 752
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 1 cut(s) 40
XagI CCTNNNNNAGG 1 cut(s) 136
XspI CTAG 5 cut(s) 101, 464, 662, 719, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.