Rorug04G0256600

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000147
Physical Location & Seq
Reverse (-)
42908372 .. 42912000
3629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0256600.1

Sequence Viewer

Length: 1515 bp
ATGCTGGGAGAAACTATGATTAAACCTGAAGGAGAACTTAAAGTAAGCTTTGGCTATCAATGCAGTAGTGACAGAGTCGATTCTTGTGAGGCTTCCAGTGGATATGAAATCCTGCCTGACCTCCGAAGGAACAGTAGTTTCTCTTGCTTGTCTGGAGCTGCGTTAAGTGCCAATGCCACTCTGGCAAACACTAATATCTGCAATGGTTTGATAGGGGAAGAAATACTTCCTAGTTGGGACTCCCCTAATTCATTTCGTAAGGTACCCTCTTCGCCAAGGTTGGATATATTATCATCTTCTCTTCAGAGTAGTATGTCCAACTTAAGTTGCAGTCCATCTACACCCGAGTCTGATTCTTACTTGATGAAATCCATGAGTCCTACTTCCAGAGGTGAAGGTTTTCTCAATTCCATGGAAGTACAAGTGGCAGGTGGAGCTGCTGGTGAAGACAGGGTCCAAGCGGTTTGTTCTGAAGAAAATGGGTGGCTGTATTGTGCAATATACGATGGCTTTAATGGAAGAGACGCAGCTGATTTTCTGGCTGGGACACTGTATGAAACCATTGTATTTTACTTTAATTCATTAGACTGGGAATCAAATCAGGAATCCATCAATGCTTCTAAAGGGCTAAATATTGATGGGTCTCGTCCATTTATTGAAGATGATAGTAATATTGAAAATATCTCCAAGGATGCTTCATCTACTGACGTAGAAATGTCAACTGATTCATTCAGGCATGGGGTACTTGATAGCCTACAACGAGCTCTTAGTCAGGCCGAGAATGATTTTCTATACATGGTTGAGCAGGAAATGGAGGATCGTCCTGATTTGGTTTCTGTTGGCTCTTGTGTTTTAGTTGTGCTTCTTCATGGGAATGATTTGTATACACTTAATTTAGGTGACAGCCGGGCTGTGTTGGCAACACTTGGTGATGGTGATTTCATGAATGGGAGTGAGAGACTGAAAGCTATCCAGCTCACTGAAAGTCATACGGTTGATGATGAAGTTGAAAGAACGCGAGTTTTGTGTGATCATCCTGATGACCCCATGTCCATTGTGGCTGGAAAAGTAAAAGGGAAATTGAAGGTCACTCGAGCTTTTGGAGTTGGTTACTTGAAAAAGAAAAAACTGAATGATGCATTGATGGGGATTCTTCAAGTTCGTAATCTAATAAGCCCACCATATGTTTCTACTCAACCATCATTGAGTGTGCGTAGAATATCAAAGTCGGATCGATTTGTCATAGTTGCAAGTGATGGTTTGTTTGACTTTTTTACCAATGACGAGGCAGTAAAGCTTGTCCATTCCTATATCTTGAGCAACCCCTCTGGTGATCCATCTAAGTTTCTGCTGGAGCAGCTTGTAGTGAAAGCAGCCAACTGTGCAGGATTCAGTATGGAAGAACTAATGAATATACCAGCGGGGAGGAGGAGGAAGTATCATGATGATGTAACTGTAATTGTGGTAATTCTTGGTACAAATCAGCGCACCACAAAGGCATCAACTTGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

504

Amino Acids

54.99

Weight (kDa)

4.73

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 243 - 442 1.6e-31 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 419
Acc36I ACCTGC 1 cut(s) 419
Acc65I GGTACC 1 cut(s) 262
AccB1I GGYRCC 1 cut(s) 262
AccI GTMKAC 1 cut(s) 884
AccII CGCG 1 cut(s) 1018
AciI CCGC 2 cut(s) 461, 1421
AclWI GGATC 3 cut(s) 825, 1239, 1328
AcuI CTGAAG 3 cut(s) 48, 287, 492
AdeI CACNNNGTG 1 cut(s) 929
AfaI GTAC 4 cut(s) 264, 420, 744, 1477
AflII CTTAAG 1 cut(s) 322
AgsI TTSAA 6 cut(s) 659, 677, 1010, 1084, 1117, 1157
AhdI GACNNNNNGTC 1 cut(s) 1048
Alw21I GWGCWC 1 cut(s) 766
Alw26I GTCTC 3 cut(s) 516, 648, 952
AlwI GGATC 3 cut(s) 825, 1239, 1328
Ama87I CYCGRG 2 cut(s) 344, 1092
AoxI GGCC 1 cut(s) 774
ApeKI GCWGC 5 cut(s) 158, 437, 527, 1357, 1373
Asp700I GAANNNNTTC 2 cut(s) 225, 399
Asp718I GGTACC 1 cut(s) 262
AspLEI GCGC 1 cut(s) 1488
AspS9I GGNCC 1 cut(s) 454
AsuC2I CCSGG 1 cut(s) 908
AsuHPI GGTGA 6 cut(s) 404, 455, 911, 941, 947, 1343
AvaI CYCGRG 2 cut(s) 344, 1092
AvaII GGWCC 1 cut(s) 454
BanI GGYRCC 1 cut(s) 262
BanII GRGCYC 1 cut(s) 766
BbsI GAAGAC 1 cut(s) 453
Bbv12I GWGCWC 1 cut(s) 766
BbvI GCAGC 5 cut(s) 145, 424, 539, 1369, 1385
BccI CCATC 9 cut(s) 343, 500, 617, 632, 926, 1138, 1207, 1250, 1345
BclI TGATCA 1 cut(s) 1030
BcnI CCSGG 1 cut(s) 908
BcoDI GTCTC 3 cut(s) 516, 648, 952
BfaI CTAG 1 cut(s) 231
BfrI CTTAAG 1 cut(s) 322
BfuAI ACCTGC 1 cut(s) 419
BglI GCCNNNNNGGC 1 cut(s) 182
BisI GCNGC 5 cut(s) 159, 438, 528, 1358, 1374
BlsI GCNGC 5 cut(s) 160, 439, 529, 1359, 1375
Bme1390I CCNGG 1 cut(s) 908
Bme18I GGWCC 1 cut(s) 454
BmeRI GACNNNNNGTC 1 cut(s) 1048
BmeT110I CYCGRG 2 cut(s) 344, 1092
BmgT120I GGNCC 1 cut(s) 454
BmiI GGNNCC 2 cut(s) 264, 455
BmrFI CCNGG 1 cut(s) 908
BmrI ACTGGG 1 cut(s) 598
BmsI GCATC 3 cut(s) 682, 1126, 1508
BmuI ACTGGG 1 cut(s) 598
BpiI GAAGAC 1 cut(s) 453
BpmI CTGGAG 2 cut(s) 174, 1373
BpuEI CTTGAG 1 cut(s) 1336
BpuMI CCSGG 1 cut(s) 908
Bsa29I ATCGAT 1 cut(s) 1234
BsaI GGTCTC 1 cut(s) 648
BsaJI CCNNGG 3 cut(s) 275, 411, 687
Bse1I ACTGG 2 cut(s) 96, 593
Bse3DI GCAATG 1 cut(s) 208
BseCI ATCGAT 1 cut(s) 1234
BseDI CCNNGG 3 cut(s) 275, 411, 687
BseGI GGATG 2 cut(s) 697, 1033
BseMI GCAATG 1 cut(s) 208
BseNI ACTGG 2 cut(s) 96, 593
BseRI GAGGAG 2 cut(s) 1441, 1444
BseXI GCAGC 5 cut(s) 145, 424, 539, 1369, 1385
BseYI CCCAGC 2 cut(s) 4, 542
BsgI GTGCAG 1 cut(s) 1404
Bsh1236I CGCG 1 cut(s) 1018
BshFI GGCC 1 cut(s) 776
BshNI GGYRCC 1 cut(s) 262
BshVI ATCGAT 1 cut(s) 1234
BsiHKAI GWGCWC 1 cut(s) 766
BsiHKCI CYCGRG 2 cut(s) 344, 1092
BsiSI CCGG 1 cut(s) 907
BslFI GGGAC 2 cut(s) 251, 559
BsmAI GTCTC 3 cut(s) 516, 648, 952
BsmBI CGTCTC 1 cut(s) 516
BsmFI GGGAC 2 cut(s) 251, 559
BsnI GGCC 1 cut(s) 776
Bso31I GGTCTC 1 cut(s) 648
BsoBI CYCGRG 2 cut(s) 344, 1092
Bsp1286I GDGCHC 1 cut(s) 766
Bsp143I GATC 4 cut(s) 817, 1030, 1231, 1333
Bsp19I CCATGG 1 cut(s) 411
BspACI CCGC 2 cut(s) 461, 1421
BspANI GGCC 1 cut(s) 776
BspDI ATCGAT 1 cut(s) 1234
BspFNI CGCG 1 cut(s) 1018
BspHI TCATGA 2 cut(s) 942, 1441
BspLI GGNNCC 2 cut(s) 264, 455
BspMI ACCTGC 1 cut(s) 419
BspPI GGATC 3 cut(s) 825, 1239, 1328
BspT107I GGYRCC 1 cut(s) 262
BspTI CTTAAG 1 cut(s) 322
BspTNI GGTCTC 1 cut(s) 648
BsrDI GCAATG 1 cut(s) 208
BsrI ACTGG 2 cut(s) 96, 593
BssECI CCNNGG 3 cut(s) 275, 411, 687
BssMI GATC 4 cut(s) 817, 1030, 1231, 1333
BssNAI GTATAC 1 cut(s) 885
BssT1I CCWWGG 3 cut(s) 275, 411, 687
Bst1107I GTATAC 1 cut(s) 885
Bst4CI ACNGT 5 cut(s) 134, 552, 994, 1382, 1456
Bst6I CTCTTC 3 cut(s) 274, 306, 514
BstAFI CTTAAG 1 cut(s) 322
BstDEI CTNAG 2 cut(s) 767, 1341
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 2 cut(s) 697, 1033
BstFNI CGCG 1 cut(s) 1018
BstHHI GCGC 1 cut(s) 1488
BstKTI GATC 4 cut(s) 820, 1033, 1234, 1336
BstMAI GTCTC 3 cut(s) 516, 648, 952
BstMBI GATC 4 cut(s) 817, 1030, 1231, 1333
BstMWI GCNNNNNNNGC 7 cut(s) 60, 167, 182, 434, 917, 1357, 1382
BstSCI CCNGG 1 cut(s) 906
BstUI CGCG 1 cut(s) 1018
BstV1I GCAGC 5 cut(s) 145, 424, 539, 1369, 1385
BstV2I GAAGAC 1 cut(s) 453
BstZ17I GTATAC 1 cut(s) 885
Bsu15I ATCGAT 1 cut(s) 1234
BsuRI GGCC 1 cut(s) 776
BsuTUI ATCGAT 1 cut(s) 1234
BtgI CCRYGG 1 cut(s) 411
BtsCI GGATG 2 cut(s) 697, 1033
BtsIMutI CAGTG 3 cut(s) 103, 548, 978
BveI ACCTGC 1 cut(s) 419
CciI TCATGA 2 cut(s) 942, 1441
CfoI GCGC 1 cut(s) 1488
Cfr13I GGNCC 1 cut(s) 454
ClaI ATCGAT 1 cut(s) 1234
CseI GACGC 1 cut(s) 533
Csp6I GTAC 4 cut(s) 263, 419, 743, 1476
CviAII CATG 8 cut(s) 373, 412, 737, 796, 869, 943, 1048, 1442
CviQI GTAC 4 cut(s) 263, 419, 743, 1476
DdeI CTNAG 2 cut(s) 767, 1341
DpnI GATC 4 cut(s) 819, 1032, 1233, 1335
DpnII GATC 4 cut(s) 817, 1030, 1231, 1333
DraIII CACNNNGTG 1 cut(s) 929
DriI GACNNNNNGTC 1 cut(s) 1048
Eam1104I CTCTTC 3 cut(s) 274, 306, 514
Eam1105I GACNNNNNGTC 1 cut(s) 1048
EarI CTCTTC 3 cut(s) 274, 306, 514
Ecl136II GAGCTC 1 cut(s) 764
Eco130I CCWWGG 3 cut(s) 275, 411, 687
Eco24I GRGCYC 1 cut(s) 766
Eco31I GGTCTC 1 cut(s) 648
Eco47I GGWCC 1 cut(s) 454
Eco53kI GAGCTC 1 cut(s) 764
Eco57I CTGAAG 3 cut(s) 48, 287, 492
Eco88I CYCGRG 2 cut(s) 344, 1092
EcoICRI GAGCTC 1 cut(s) 764
EcoT14I CCWWGG 3 cut(s) 275, 411, 687
EcoT22I ATGCAT 1 cut(s) 1141
EcoT38I GRGCYC 1 cut(s) 766
ErhI CCWWGG 3 cut(s) 275, 411, 687
Esp3I CGTCTC 1 cut(s) 516
FaeI CATG 8 cut(s) 376, 415, 740, 799, 872, 946, 1051, 1445
FalI AAGNNNNNCTT 4 cut(s) 21, 53, 210, 242
FaqI GGGAC 2 cut(s) 251, 559
FatI CATG 8 cut(s) 372, 411, 736, 795, 868, 942, 1047, 1441
FauI CCCGC 1 cut(s) 1414
FauNDI CATATG 1 cut(s) 1183
FbaI TGATCA 1 cut(s) 1030
FblI GTMKAC 1 cut(s) 884
Fnu4HI GCNGC 5 cut(s) 159, 438, 528, 1358, 1374
FokI GGATG 2 cut(s) 704, 1020
FriOI GRGCYC 1 cut(s) 766
Fsp4HI GCNGC 5 cut(s) 159, 438, 528, 1358, 1374
FspBI CTAG 1 cut(s) 231
GlaI GCGC 1 cut(s) 1487
GluI GCNGC 5 cut(s) 159, 438, 528, 1358, 1374
GsaI CCCAGC 2 cut(s) 8, 546
GsuI CTGGAG 2 cut(s) 174, 1373
HaeIII GGCC 1 cut(s) 776
HapII CCGG 1 cut(s) 907
HgaI GACGC 1 cut(s) 533
HhaI GCGC 1 cut(s) 1488
Hin1II CATG 8 cut(s) 376, 415, 740, 799, 872, 946, 1051, 1445
Hin6I GCGC 1 cut(s) 1486
HinP1I GCGC 1 cut(s) 1486
HincII GTYRAC 1 cut(s) 720
HindII GTYRAC 1 cut(s) 720
HindIII AAGCTT 2 cut(s) 46, 1295
HpaII CCGG 1 cut(s) 907
HphI GGTGA 6 cut(s) 404, 455, 911, 941, 947, 1343
Hpy166II GTNNAC 2 cut(s) 720, 885
Hpy188I TCNGA 5 cut(s) 125, 306, 352, 472, 1231
Hpy188III TCNNGA 8 cut(s) 153, 387, 602, 824, 943, 1037, 1315, 1442
Hpy8I GTNNAC 2 cut(s) 720, 885
HpyAV CCTTC 4 cut(s) 23, 120, 389, 1078
HpyCH4III ACNGT 5 cut(s) 134, 552, 994, 1382, 1456
HpyCH4IV ACGT 1 cut(s) 708
HpyCH4V TGCA 7 cut(s) 63, 201, 330, 497, 1139, 1250, 1385
HpyF10VI GCNNNNNNNGC 7 cut(s) 60, 167, 182, 434, 917, 1357, 1382
HpyF3I CTNAG 2 cut(s) 767, 1341
HpySE526I ACGT 1 cut(s) 708
Hsp92II CATG 8 cut(s) 376, 415, 740, 799, 872, 946, 1051, 1445
HspAI GCGC 1 cut(s) 1486
KpnI GGTACC 1 cut(s) 266
Ksp22I TGATCA 1 cut(s) 1030
Kzo9I GATC 4 cut(s) 817, 1030, 1231, 1333
LmnI GCTCC 3 cut(s) 155, 434, 1354
Lsp1109I GCAGC 5 cut(s) 145, 424, 539, 1369, 1385
LweI GCATC 3 cut(s) 682, 1126, 1508
MaeI CTAG 1 cut(s) 231
MaeII ACGT 1 cut(s) 708
MaeIII GTNAC 5 cut(s) 68, 899, 1087, 1109, 1450
MalI GATC 4 cut(s) 819, 1032, 1233, 1335
MboI GATC 4 cut(s) 817, 1030, 1231, 1333
MhlI GDGCHC 1 cut(s) 766
MluCI AATT 7 cut(s) 247, 406, 577, 892, 1079, 1458, 1467
MlyI GAGTC 4 cut(s) 84, 233, 356, 385
MmeI TCCRAC 3 cut(s) 261, 342, 1209
Mph1103I ATGCAT 1 cut(s) 1141
MroXI GAANNNNTTC 2 cut(s) 225, 399
MseI TTAA 7 cut(s) 21, 39, 164, 323, 513, 576, 891
MslI CAYNNNNRTG 3 cut(s) 873, 1038, 1446
MspA1I CMGCKG 2 cut(s) 530, 1421
MspCI CTTAAG 1 cut(s) 322
MspI CCGG 1 cut(s) 907
MspR9I CCNGG 1 cut(s) 908
MvnI CGCG 1 cut(s) 1018
MwoI GCNNNNNNNGC 7 cut(s) 60, 167, 182, 434, 917, 1357, 1382
NciI CCSGG 1 cut(s) 908
NcoI CCATGG 1 cut(s) 411
NdeI CATATG 1 cut(s) 1183
NdeII GATC 4 cut(s) 817, 1030, 1231, 1333
NlaIII CATG 8 cut(s) 376, 415, 740, 799, 872, 946, 1051, 1445
NlaIV GGNNCC 2 cut(s) 264, 455
NmeAIII GCCGAG 1 cut(s) 802
NmuCI GTSAC 3 cut(s) 68, 899, 1087
NsiI ATGCAT 1 cut(s) 1141
PaeR7I CTCGAG 1 cut(s) 1092
PagI TCATGA 2 cut(s) 942, 1441
PaqCI CACCTGC 1 cut(s) 419
PdmI GAANNNNTTC 2 cut(s) 225, 399
PfeI GAWTC 7 cut(s) 80, 353, 593, 605, 725, 1150, 1389
PflFI GACNNNGTC 2 cut(s) 74, 452
PkrI GCNGC 5 cut(s) 160, 439, 529, 1359, 1375
PleI GAGTC 4 cut(s) 83, 233, 355, 384
PpsI GAGTC 4 cut(s) 83, 233, 355, 384
Psp124BI GAGCTC 1 cut(s) 766
PspFI CCCAGC 2 cut(s) 4, 542
PspN4I GGNNCC 2 cut(s) 264, 455
PspPI GGNCC 1 cut(s) 454
PspXI VCTCGAGB 1 cut(s) 1092
PsyI GACNNNGTC 2 cut(s) 74, 452
PvuII CAGCTG 1 cut(s) 530
RsaI GTAC 4 cut(s) 264, 420, 744, 1477
RsaNI GTAC 4 cut(s) 263, 419, 743, 1476
RseI CAYNNNNRTG 3 cut(s) 873, 1038, 1446
SacI GAGCTC 1 cut(s) 766
SaqAI TTAA 7 cut(s) 21, 39, 164, 323, 513, 576, 891
SatI GCNGC 5 cut(s) 159, 438, 528, 1358, 1374
Sau3AI GATC 4 cut(s) 817, 1030, 1231, 1333
Sau96I GGNCC 1 cut(s) 454
SchI GAGTC 4 cut(s) 84, 233, 356, 385
ScrFI CCNGG 1 cut(s) 908
SduI GDGCHC 1 cut(s) 766
SfaNI GCATC 3 cut(s) 682, 1126, 1508
Sfr274I CTCGAG 1 cut(s) 1092
SinI GGWCC 1 cut(s) 454
SlaI CTCGAG 1 cut(s) 1092
SmiMI CAYNNNNRTG 3 cut(s) 873, 1038, 1446
SmlI CTYRAG 3 cut(s) 322, 1092, 1315
SmoI CTYRAG 3 cut(s) 322, 1092, 1315
Sse9I AATT 7 cut(s) 247, 406, 577, 892, 1079, 1458, 1467
SsiI CCGC 2 cut(s) 461, 1421
SspI AATATT 2 cut(s) 634, 673
SspMI CTAG 1 cut(s) 231
SstI GAGCTC 1 cut(s) 766
StyD4I CCNGG 1 cut(s) 906
StyI CCWWGG 3 cut(s) 275, 411, 687
TaaI ACNGT 5 cut(s) 134, 552, 994, 1382, 1456
TaiI ACGT 1 cut(s) 711
TaqI TCGA 3 cut(s) 78, 1093, 1234
TasI AATT 7 cut(s) 247, 406, 577, 892, 1079, 1458, 1467
TatI WGTACW 1 cut(s) 418
TfiI GAWTC 7 cut(s) 80, 353, 593, 605, 725, 1150, 1389
Tru1I TTAA 7 cut(s) 21, 39, 164, 323, 513, 576, 891
Tru9I TTAA 7 cut(s) 21, 39, 164, 323, 513, 576, 891
TscAI CASTG 3 cut(s) 103, 555, 985
TseFI GTSAC 3 cut(s) 68, 899, 1087
TseI GCWGC 5 cut(s) 158, 437, 527, 1357, 1373
Tsp45I GTSAC 3 cut(s) 68, 899, 1087
TspRI CASTG 3 cut(s) 103, 555, 985
Tth111I GACNNNGTC 2 cut(s) 74, 452
Vha464I CTTAAG 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 454
XcmI CCANNNNNNNNNTGG 2 cut(s) 178, 1054
XhoI CTCGAG 1 cut(s) 1092
XmiI GTMKAC 1 cut(s) 884
XmnI GAANNNNTTC 2 cut(s) 225, 399
XspI CTAG 1 cut(s) 231
Zsp2I ATGCAT 1 cut(s) 1141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.