Rh6AG253100

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000147
Physical Location & Seq
Reverse (-)
44292239 .. 44292928
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG253100.1

Sequence Viewer

Length: 690 bp
ATGGAGACATATCAGCCTTCTGATGTGGTTTCTTCTTGGTTTAAACAGCTCAAGTTTGATCACTCTTTTGTTGTTAACCCTGTAAATAATAGTAGTGGTGGTTTGGCTTTGTTTTGGAAATCTTCTGCTCAAGCATCAGTCTTGTATGATTCAGTGAATGTCATAGATACTGAGGTTTTGTTTGTACATGAAGATTTCCGTTGTAAGATAAGTTGGCTTTATGGAAATCCTTATGAAAATGAAAAGAAAGTTTTTTGGAGTTCCATGATTCGTCGTTTTCCAGTTCAATTTCTTCCTTGGATTTGTTTAGGTGATTTCAATGAGATCCAATGGTCCTATGAGAAATGGGGAGGTCTTCCTCATTCTCGATGCCGCATGGATCTCTTTAATCATTTCATTACTCAAGCCGGCTTGAGGGATTTGCACTTCCAGGGTCCTTGTTTCACTTGGTATCGTTATCGTTTTGGGGACCTTTATCTTAAGGAACGGTTGGATAGAGGTCGTGCAAATTCTTCATGGTGTTTGGCTAAACCAAGGACTCAAGTTTTCCATCTTCCCTTGCTTGGGTTGGATCATCGTCCTTTACTATTGGATGCTTCTCCAGTTGAATCCAAGGCTCCCAAACTTTTTCGGTTTGAGCACATTTGGACGACTAGTGATATGTGTGGCCAAATCATTGCAGAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

229

Amino Acids

26.94

Weight (kDa)

7.66

Isoelectric Point (pI)

28.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 373
AclWI GGATC 3 cut(s) 319, 387, 579
AcoI YGGCCR 1 cut(s) 667
AcsI RAATTY 1 cut(s) 508
AfaI GTAC 1 cut(s) 186
AfiI CCNNNNNNNGG 3 cut(s) 414, 563, 564
AflII CTTAAG 1 cut(s) 479
AgsI TTSAA 3 cut(s) 287, 319, 608
AhlI ACTAGT 1 cut(s) 653
AjnI CCWGG 1 cut(s) 429
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
Alw21I GWGCWC 1 cut(s) 642
AlwI GGATC 3 cut(s) 319, 387, 579
AoxI GGCC 1 cut(s) 667
ApoI RAATTY 1 cut(s) 508
AspS9I GGNCC 3 cut(s) 333, 434, 469
AsuHPI GGTGA 1 cut(s) 323
AvaII GGWCC 3 cut(s) 333, 434, 469
BaeI ACNNNNGTAYC 2 cut(s) 159, 192
BalI TGGCCA 1 cut(s) 669
BbsI GAAGAC 1 cut(s) 347
Bbv12I GWGCWC 1 cut(s) 642
BccI CCATC 1 cut(s) 558
BciT130I CCWGG 1 cut(s) 431
BclI TGATCA 1 cut(s) 58
BcuI ACTAGT 1 cut(s) 653
BfaI CTAG 1 cut(s) 654
BfrI CTTAAG 1 cut(s) 479
BisI GCNGC 1 cut(s) 373
BlsI GCNGC 1 cut(s) 374
Bme1390I CCNGG 1 cut(s) 431
Bme18I GGWCC 3 cut(s) 333, 434, 469
BmgT120I GGNCC 3 cut(s) 333, 434, 469
BmiI GGNNCC 3 cut(s) 435, 470, 618
BmrFI CCNGG 1 cut(s) 431
BmsI GCATC 3 cut(s) 143, 359, 583
BpiI GAAGAC 1 cut(s) 347
BpmI CTGGAG 1 cut(s) 585
BpuEI CTTGAG 5 cut(s) 35, 114, 387, 433, 525
BsaJI CCNNGG 4 cut(s) 296, 430, 533, 612
Bsc4I CCNNNNNNNGG 3 cut(s) 414, 563, 564
Bse118I RCCGGY 1 cut(s) 407
Bse1I ACTGG 2 cut(s) 281, 602
Bse3DI GCAATG 1 cut(s) 675
BseBI CCWGG 1 cut(s) 431
BseDI CCNNGG 4 cut(s) 296, 430, 533, 612
BseGI GGATG 1 cut(s) 598
BseLI CCNNNNNNNGG 3 cut(s) 414, 563, 564
BseMI GCAATG 1 cut(s) 675
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 2 cut(s) 281, 602
BshFI GGCC 1 cut(s) 669
BsiHKAI GWGCWC 1 cut(s) 642
BsiSI CCGG 1 cut(s) 408
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 3 cut(s) 414, 563, 564
BsmFI GGGAC 1 cut(s) 482
BsnI GGCC 1 cut(s) 669
Bsp1286I GDGCHC 1 cut(s) 642
Bsp1407I TGTACA 1 cut(s) 184
Bsp143I GATC 4 cut(s) 58, 324, 379, 571
BspACI CCGC 1 cut(s) 373
BspANI GGCC 1 cut(s) 669
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 3 cut(s) 435, 470, 618
BspPI GGATC 3 cut(s) 319, 387, 579
BspTI CTTAAG 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 675
BsrFI RCCGGY 1 cut(s) 407
BsrGI TGTACA 1 cut(s) 184
BsrI ACTGG 2 cut(s) 281, 602
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 4 cut(s) 296, 430, 533, 612
BssMI GATC 4 cut(s) 58, 324, 379, 571
BssT1I CCWWGG 3 cut(s) 296, 533, 612
Bst2UI CCWGG 1 cut(s) 431
Bst4CI ACNGT 1 cut(s) 489
BstAFI CTTAAG 1 cut(s) 479
BstAUI TGTACA 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 409
BstDEI CTNAG 1 cut(s) 171
BstF5I GGATG 1 cut(s) 598
BstKTI GATC 4 cut(s) 61, 327, 382, 574
BstMBI GATC 4 cut(s) 58, 324, 379, 571
BstNI CCWGG 1 cut(s) 431
BstSCI CCNGG 1 cut(s) 429
BstV2I GAAGAC 1 cut(s) 347
BstX2I RGATCY 2 cut(s) 324, 379
BstYI RGATCY 2 cut(s) 324, 379
BsuRI GGCC 1 cut(s) 669
BtsCI GGATG 1 cut(s) 598
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 409
Cfr10I RCCGGY 1 cut(s) 407
Cfr13I GGNCC 3 cut(s) 333, 434, 469
Csp6I GTAC 1 cut(s) 185
CviAII CATG 4 cut(s) 188, 265, 376, 516
CviJI RGCY 9 cut(s) 16, 49, 107, 217, 407, 411, 527, 617, 669
CviKI_1 RGCY 9 cut(s) 16, 49, 107, 217, 407, 411, 527, 617, 669
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 1 cut(s) 171
DpnI GATC 4 cut(s) 60, 326, 381, 573
DpnII GATC 4 cut(s) 58, 324, 379, 571
DraI TTTAAA 1 cut(s) 43
EaeI YGGCCR 1 cut(s) 667
Eco130I CCWWGG 3 cut(s) 296, 533, 612
Eco47I GGWCC 3 cut(s) 333, 434, 469
EcoO109I RGGNCCY 2 cut(s) 434, 469
EcoRII CCWGG 1 cut(s) 429
EcoT14I CCWWGG 3 cut(s) 296, 533, 612
ErhI CCWWGG 3 cut(s) 296, 533, 612
FaeI CATG 4 cut(s) 191, 268, 379, 519
FaqI GGGAC 1 cut(s) 482
FatI CATG 4 cut(s) 187, 264, 375, 515
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 373
FokI GGATG 1 cut(s) 605
Fsp4HI GCNGC 1 cut(s) 373
FspBI CTAG 1 cut(s) 654
GluI GCNGC 1 cut(s) 373
GsuI CTGGAG 1 cut(s) 585
HaeIII GGCC 1 cut(s) 669
HapII CCGG 1 cut(s) 408
Hin1II CATG 4 cut(s) 191, 268, 379, 519
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 4 cut(s) 149, 268, 538, 608
HpaI GTTAAC 1 cut(s) 76
HpaII CCGG 1 cut(s) 408
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 1 cut(s) 366
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 1 cut(s) 276
HpyAV CCTTC 1 cut(s) 27
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4V TGCA 3 cut(s) 424, 506, 680
HpyF3I CTNAG 1 cut(s) 171
Hsp92II CATG 4 cut(s) 191, 268, 379, 519
KroI GCCGGC 1 cut(s) 407
KroNI GCCGGC 1 cut(s) 409
Ksp22I TGATCA 1 cut(s) 58
KspAI GTTAAC 1 cut(s) 76
Kzo9I GATC 4 cut(s) 58, 324, 379, 571
LmnI GCTCC 1 cut(s) 622
LpnPI CCDG 6 cut(s) 93, 294, 416, 421, 443, 615
LweI GCATC 3 cut(s) 143, 359, 583
MaeI CTAG 1 cut(s) 654
MalI GATC 4 cut(s) 60, 326, 381, 573
MboI GATC 4 cut(s) 58, 324, 379, 571
MboII GAAGA 7 cut(s) 24, 114, 203, 284, 347, 504, 545
MflI RGATCY 2 cut(s) 324, 379
MhlI GDGCHC 1 cut(s) 642
MlsI TGGCCA 1 cut(s) 669
MluCI AATT 3 cut(s) 287, 508, 685
MluNI TGGCCA 1 cut(s) 669
MlyI GAGTC 1 cut(s) 532
MmeI TCCRAC 2 cut(s) 471, 549
MnlI CCTC 5 cut(s) 166, 344, 369, 408, 491
Mox20I TGGCCA 1 cut(s) 669
MroNI GCCGGC 1 cut(s) 407
MscI TGGCCA 1 cut(s) 669
MseI TTAA 4 cut(s) 42, 75, 387, 480
Msp20I TGGCCA 1 cut(s) 669
MspCI CTTAAG 1 cut(s) 479
MspI CCGG 1 cut(s) 408
MspR9I CCNGG 1 cut(s) 431
MssI GTTTAAAC 1 cut(s) 43
MvaI CCWGG 1 cut(s) 431
NaeI GCCGGC 1 cut(s) 409
NdeII GATC 4 cut(s) 58, 324, 379, 571
NgoMIV GCCGGC 1 cut(s) 407
NlaIII CATG 4 cut(s) 191, 268, 379, 519
NlaIV GGNNCC 3 cut(s) 435, 470, 618
PdiI GCCGGC 1 cut(s) 409
PfeI GAWTC 3 cut(s) 149, 268, 608
PkrI GCNGC 1 cut(s) 374
PleI GAGTC 1 cut(s) 532
PmeI GTTTAAAC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 532
PpuMI RGGWCCY 2 cut(s) 434, 469
Psp5II RGGWCCY 2 cut(s) 434, 469
Psp6I CCWGG 1 cut(s) 429
PspGI CCWGG 1 cut(s) 429
PspN4I GGNNCC 3 cut(s) 435, 470, 618
PspPI GGNCC 3 cut(s) 333, 434, 469
PspPPI RGGWCCY 2 cut(s) 434, 469
PsuI RGATCY 2 cut(s) 324, 379
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SaqAI TTAA 4 cut(s) 42, 75, 387, 480
SatI GCNGC 1 cut(s) 373
Sau3AI GATC 4 cut(s) 58, 324, 379, 571
Sau96I GGNCC 3 cut(s) 333, 434, 469
SchI GAGTC 1 cut(s) 532
ScrFI CCNGG 1 cut(s) 431
SduI GDGCHC 1 cut(s) 642
SetI ASST 6 cut(s) 51, 177, 313, 355, 474, 502
SfaNI GCATC 3 cut(s) 143, 359, 583
SinI GGWCC 3 cut(s) 333, 434, 469
SmlI CTYRAG 6 cut(s) 50, 129, 402, 412, 479, 540
SmoI CTYRAG 6 cut(s) 50, 129, 402, 412, 479, 540
SpeI ACTAGT 1 cut(s) 653
Sse9I AATT 3 cut(s) 287, 508, 685
SsiI CCGC 1 cut(s) 373
SspMI CTAG 1 cut(s) 654
StyD4I CCNGG 1 cut(s) 429
StyI CCWWGG 3 cut(s) 296, 533, 612
TaaI ACNGT 1 cut(s) 489
TaqI TCGA 1 cut(s) 367
TasI AATT 3 cut(s) 287, 508, 685
TatI WGTACW 1 cut(s) 184
TauI GCSGC 1 cut(s) 375
TfiI GAWTC 3 cut(s) 149, 268, 608
Tru1I TTAA 4 cut(s) 42, 75, 387, 480
Tru9I TTAA 4 cut(s) 42, 75, 387, 480
TscAI CASTG 1 cut(s) 159
TspDTI ATGAA 5 cut(s) 204, 249, 255, 385, 504
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 1 cut(s) 159
Vha464I CTTAAG 1 cut(s) 479
VpaK11BI GGWCC 3 cut(s) 333, 434, 469
XapI RAATTY 1 cut(s) 508
XspI CTAG 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.