Rmu_sc0009012.1_g000007

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009012.1
OG0000147
Physical Location & Seq
Forward (+)
21970 .. 23172
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009012.1_g000007.1.cds

Sequence Viewer

Length: 771 bp
atgggtttttccttgagctttagtgttaaaccgatcaacctagcaggcggattatctctttggaggaggtcggattactcagttgatattgttgatttttctaagtggtttattgatactctcattaccttaccaggcataagtggcaagatcagggtgacttggatgtatggcccaccctatgcgatagataaggagaatttctggataaccaatggtagaggagctcaatccccttggctggtaattggggacttaaatgagatgctctaccaattcgagatggaaggtggggttccctggagtcctaacagacctcaatatctcagaaattttactaattctaactccctacttgatattggcttcaaagggcaaaagttcacctgggctagaaataaagaggggaatgttatcgttaaagaagaaaaatactggcaacaacgctcttgggtgagctggcttaaatcgggagattcaaactccaggtttttccatctttccactgttcacagaagacagaagaatagaattttaaaaatccaaaatgaggagggggcttggattgtgggagagaatttaatcagattggaatttgaagcccagtttaaaaagcttttcacctgcttagggcaacgtcagtggggcgaagtgtttatgggattgtcccatttggtctcgaatgattggaatcaggatctcattgctccgatctccttggaggaggtgatggaggctactcatcaacttggagcgctaaaggcaccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

256

Amino Acids

29.64

Weight (kDa)

8.9

Isoelectric Point (pI)

28.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 632
Acc36I ACCTGC 1 cut(s) 632
AccB1I GGYRCC 1 cut(s) 763
AciI CCGC 1 cut(s) 48
AclWI GGATC 1 cut(s) 705
AcsI RAATTY 5 cut(s) 199, 331, 531, 577, 593
AfeI AGCGCT 1 cut(s) 756
AfiI CCNNNNNNNGG 3 cut(s) 241, 550, 630
AgsI TTSAA 3 cut(s) 370, 480, 599
AjnI CCWGG 4 cut(s) 133, 299, 386, 485
AluBI AGCT 4 cut(s) 18, 227, 459, 616
AluI AGCT 4 cut(s) 18, 227, 459, 616
Alw21I GWGCWC 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 682
AlwI GGATC 1 cut(s) 705
Aor51HI AGCGCT 1 cut(s) 756
AoxI GGCC 1 cut(s) 172
ApoI RAATTY 5 cut(s) 199, 331, 531, 577, 593
AspLEI GCGC 1 cut(s) 757
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 5 cut(s) 169, 376, 466, 613, 739
BanI GGYRCC 1 cut(s) 763
BanII GRGCYC 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 523
Bbv12I GWGCWC 1 cut(s) 229
BccI CCATC 3 cut(s) 277, 504, 724
BciT130I CCWGG 4 cut(s) 135, 301, 388, 487
BcoDI GTCTC 1 cut(s) 682
BfaI CTAG 2 cut(s) 41, 393
BfoI RGCGCY 1 cut(s) 758
BfuAI ACCTGC 1 cut(s) 632
Bme1390I CCNGG 4 cut(s) 135, 301, 388, 487
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 2 cut(s) 297, 765
BmrFI CCNGG 4 cut(s) 135, 301, 388, 487
BmrI ACTGGG 1 cut(s) 598
BmsI GCATC 1 cut(s) 255
BmuI ACTGGG 1 cut(s) 598
BpiI GAAGAC 1 cut(s) 523
BpmI CTGGAG 2 cut(s) 322, 469
Bpu10I CCTNAGC 1 cut(s) 628
BpuEI CTTGAG 1 cut(s) 34
BsaBI GATNNNNATC 1 cut(s) 690
BsaI GGTCTC 1 cut(s) 682
BsaJI CCNNGG 4 cut(s) 236, 299, 387, 717
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 550, 630
Bse1I ACTGG 2 cut(s) 440, 604
Bse3DI GCAATG 1 cut(s) 702
Bse8I GATNNNNATC 1 cut(s) 690
BseBI CCWGG 4 cut(s) 135, 301, 388, 487
BseDI CCNNGG 4 cut(s) 236, 299, 387, 717
BseGI GGATG 1 cut(s) 171
BseJI GATNNNNATC 1 cut(s) 690
BseLI CCNNNNNNNGG 3 cut(s) 241, 550, 630
BseMI GCAATG 1 cut(s) 702
BseMII CTCAG 2 cut(s) 93, 340
BseNI ACTGG 2 cut(s) 440, 604
BseRI GAGGAG 4 cut(s) 79, 237, 566, 737
BshFI GGCC 1 cut(s) 174
BshNI GGYRCC 1 cut(s) 763
BsiHKAI GWGCWC 1 cut(s) 229
BslFI GGGAC 2 cut(s) 266, 652
BslI CCNNNNNNNGG 3 cut(s) 241, 550, 630
BsmAI GTCTC 1 cut(s) 682
BsmFI GGGAC 2 cut(s) 266, 652
BsnI GGCC 1 cut(s) 174
Bso31I GGTCTC 1 cut(s) 682
Bsp1286I GDGCHC 1 cut(s) 229
Bsp143I GATC 4 cut(s) 33, 150, 697, 711
BspACI CCGC 1 cut(s) 48
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 2 cut(s) 92, 339
BspLI GGNNCC 2 cut(s) 297, 765
BspMI ACCTGC 1 cut(s) 632
BspPI GGATC 1 cut(s) 705
BspT107I GGYRCC 1 cut(s) 763
BspTNI GGTCTC 1 cut(s) 682
BsrDI GCAATG 1 cut(s) 702
BsrI ACTGG 2 cut(s) 440, 604
BssECI CCNNGG 4 cut(s) 236, 299, 387, 717
BssMI GATC 4 cut(s) 33, 150, 697, 711
BssT1I CCWWGG 2 cut(s) 236, 717
Bst2UI CCWGG 4 cut(s) 135, 301, 388, 487
Bst4CI ACNGT 1 cut(s) 508
BstC8I GCNNGC 2 cut(s) 46, 461
BstDEI CTNAG 4 cut(s) 79, 102, 326, 628
BstF5I GGATG 1 cut(s) 171
BstH2I RGCGCY 1 cut(s) 758
BstHHI GCGC 1 cut(s) 757
BstKTI GATC 4 cut(s) 36, 153, 700, 714
BstMAI GTCTC 1 cut(s) 682
BstMBI GATC 4 cut(s) 33, 150, 697, 711
BstMWI GCNNNNNNNGC 2 cut(s) 144, 761
BstNI CCWGG 4 cut(s) 135, 301, 388, 487
BstSCI CCNGG 4 cut(s) 133, 299, 386, 485
BstV2I GAAGAC 1 cut(s) 523
BstX2I RGATCY 1 cut(s) 697
BstYI RGATCY 1 cut(s) 697
BsuRI GGCC 1 cut(s) 174
BtsCI GGATG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 504, 647
BveI ACCTGC 1 cut(s) 632
Cac8I GCNNGC 2 cut(s) 46, 461
CfoI GCGC 1 cut(s) 757
Cfr13I GGNCC 1 cut(s) 173
CspCI CAANNNNNGTGG 2 cut(s) 623, 658
CviAII CATG 1 cut(s) 768
DdeI CTNAG 4 cut(s) 79, 102, 326, 628
DpnI GATC 4 cut(s) 35, 152, 699, 713
DpnII GATC 4 cut(s) 33, 150, 697, 711
DraI TTTAAA 2 cut(s) 537, 610
EciI GGCGGA 1 cut(s) 63
Ecl136II GAGCTC 1 cut(s) 227
Eco130I CCWWGG 2 cut(s) 236, 717
Eco24I GRGCYC 1 cut(s) 229
Eco31I GGTCTC 1 cut(s) 682
Eco47III AGCGCT 1 cut(s) 756
Eco53kI GAGCTC 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 227
EcoRII CCWGG 4 cut(s) 133, 299, 386, 485
EcoT14I CCWWGG 2 cut(s) 236, 717
EcoT38I GRGCYC 1 cut(s) 229
ErhI CCWWGG 2 cut(s) 236, 717
FaeI CATG 1 cut(s) 771
FaiI YATR 5 cut(s) 140, 171, 183, 659, 769
FaqI GGGAC 2 cut(s) 266, 652
FatI CATG 1 cut(s) 767
FokI GGATG 1 cut(s) 178
FriOI GRGCYC 1 cut(s) 229
FspBI CTAG 2 cut(s) 41, 393
GlaI GCGC 1 cut(s) 756
GsuI CTGGAG 2 cut(s) 322, 469
HaeII RGCGCY 1 cut(s) 758
HaeIII GGCC 1 cut(s) 174
HhaI GCGC 1 cut(s) 757
Hin1II CATG 1 cut(s) 771
Hin6I GCGC 1 cut(s) 755
HinP1I GCGC 1 cut(s) 755
HindIII AAGCTT 1 cut(s) 614
HinfI GANTC 3 cut(s) 304, 476, 691
HphI GGTGA 5 cut(s) 169, 376, 466, 613, 739
Hpy166II GTNNAC 2 cut(s) 384, 511
Hpy188I TCNGA 4 cut(s) 73, 329, 587, 711
Hpy188III TCNNGA 5 cut(s) 205, 280, 471, 679, 695
Hpy8I GTNNAC 2 cut(s) 384, 511
HpyAV CCTTC 1 cut(s) 281
HpyCH4III ACNGT 1 cut(s) 508
HpyCH4IV ACGT 1 cut(s) 637
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 761
HpyF3I CTNAG 4 cut(s) 79, 102, 326, 628
HpySE526I ACGT 1 cut(s) 637
Hsp92II CATG 1 cut(s) 771
HspAI GCGC 1 cut(s) 755
Kzo9I GATC 4 cut(s) 33, 150, 697, 711
LmnI GCTCC 3 cut(s) 224, 712, 752
LweI GCATC 1 cut(s) 255
MaeI CTAG 2 cut(s) 41, 393
MaeII ACGT 1 cut(s) 637
MaeIII GTNAC 1 cut(s) 157
MalI GATC 4 cut(s) 35, 152, 699, 713
MboI GATC 4 cut(s) 33, 150, 697, 711
MboII GAAGA 3 cut(s) 437, 528, 535
MflI RGATCY 1 cut(s) 697
MhlI GDGCHC 1 cut(s) 229
MluCI AATT 8 cut(s) 199, 246, 275, 331, 340, 531, 577, 593
MlyI GAGTC 1 cut(s) 313
MmeI TCCRAC 1 cut(s) 51
MseI TTAA 7 cut(s) 27, 257, 420, 465, 536, 581, 609
MspR9I CCNGG 4 cut(s) 135, 301, 388, 487
MvaI CCWGG 4 cut(s) 135, 301, 388, 487
MwoI GCNNNNNNNGC 2 cut(s) 144, 761
NdeII GATC 4 cut(s) 33, 150, 697, 711
NlaIII CATG 1 cut(s) 771
NlaIV GGNNCC 2 cut(s) 297, 765
NmuCI GTSAC 1 cut(s) 157
PaqCI CACCTGC 1 cut(s) 632
PfeI GAWTC 2 cut(s) 476, 691
PleI GAGTC 1 cut(s) 312
PpsI GAGTC 1 cut(s) 312
Psp124BI GAGCTC 1 cut(s) 229
Psp6I CCWGG 4 cut(s) 133, 299, 386, 485
PspGI CCWGG 4 cut(s) 133, 299, 386, 485
PspN4I GGNNCC 2 cut(s) 297, 765
PspPI GGNCC 1 cut(s) 173
PsuI RGATCY 1 cut(s) 697
SacI GAGCTC 1 cut(s) 229
SaqAI TTAA 7 cut(s) 27, 257, 420, 465, 536, 581, 609
Sau3AI GATC 4 cut(s) 33, 150, 697, 711
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 1 cut(s) 313
ScrFI CCNGG 4 cut(s) 135, 301, 388, 487
SduI GDGCHC 1 cut(s) 229
SfaNI GCATC 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 8 cut(s) 199, 246, 275, 331, 340, 531, 577, 593
SsiI CCGC 1 cut(s) 48
SspMI CTAG 2 cut(s) 41, 393
SstI GAGCTC 1 cut(s) 229
StyD4I CCNGG 4 cut(s) 133, 299, 386, 485
StyI CCWWGG 2 cut(s) 236, 717
TaaI ACNGT 1 cut(s) 508
TaiI ACGT 1 cut(s) 640
TaqI TCGA 2 cut(s) 279, 680
TasI AATT 8 cut(s) 199, 246, 275, 331, 340, 531, 577, 593
TfiI GAWTC 2 cut(s) 476, 691
Tru1I TTAA 7 cut(s) 27, 257, 420, 465, 536, 581, 609
Tru9I TTAA 7 cut(s) 27, 257, 420, 465, 536, 581, 609
TscAI CASTG 2 cut(s) 511, 647
TseFI GTSAC 1 cut(s) 157
Tsp45I GTSAC 1 cut(s) 157
TspRI CASTG 2 cut(s) 511, 647
XapI RAATTY 5 cut(s) 199, 331, 531, 577, 593
XspI CTAG 2 cut(s) 41, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.