ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 6 - 212 | 7e-13 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 450 |
| AciI | CCGC | 3 cut(s) | 329, 450, 614 |
| AclWI | GGATC | 1 cut(s) | 357 |
| AcsI | RAATTY | 2 cut(s) | 457, 576 |
| AfaI | GTAC | 1 cut(s) | 571 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 185, 346, 661 |
| AflIII | ACRYGT | 1 cut(s) | 321 |
| AjnI | CCWGG | 1 cut(s) | 299 |
| AluBI | AGCT | 3 cut(s) | 246, 565, 724 |
| AluI | AGCT | 3 cut(s) | 246, 565, 724 |
| AlwI | GGATC | 1 cut(s) | 357 |
| AoxI | GGCC | 2 cut(s) | 199, 615 |
| ApoI | RAATTY | 2 cut(s) | 457, 576 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 366 |
| AspS9I | GGNCC | 2 cut(s) | 665, 676 |
| AsuHPI | GGTGA | 1 cut(s) | 422 |
| AvaII | GGWCC | 2 cut(s) | 665, 676 |
| BciT130I | CCWGG | 1 cut(s) | 301 |
| BciVI | GTATCC | 1 cut(s) | 118 |
| BfaI | CTAG | 2 cut(s) | 506, 710 |
| BfuI | GTATCC | 1 cut(s) | 118 |
| BisI | GCNGC | 2 cut(s) | 451, 615 |
| BlsI | GCNGC | 2 cut(s) | 452, 616 |
| BmcAI | AGTACT | 1 cut(s) | 571 |
| Bme1390I | CCNGG | 1 cut(s) | 301 |
| Bme18I | GGWCC | 2 cut(s) | 665, 676 |
| BmgT120I | GGNCC | 2 cut(s) | 665, 676 |
| BmiI | GGNNCC | 1 cut(s) | 666 |
| BmrFI | CCNGG | 1 cut(s) | 301 |
| BmrI | ACTGGG | 1 cut(s) | 671 |
| BmsI | GCATC | 1 cut(s) | 15 |
| BmuI | ACTGGG | 1 cut(s) | 671 |
| BpuEI | CTTGAG | 1 cut(s) | 372 |
| BsaJI | CCNNGG | 2 cut(s) | 299, 395 |
| BsaWI | WCCGGW | 1 cut(s) | 181 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 185, 346, 661 |
| Bse1I | ACTGG | 1 cut(s) | 666 |
| Bse3DI | GCAATG | 1 cut(s) | 265 |
| BseBI | CCWGG | 1 cut(s) | 301 |
| BseDI | CCNNGG | 2 cut(s) | 299, 395 |
| BseGI | GGATG | 2 cut(s) | 250, 286 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 185, 346, 661 |
| BseMI | GCAATG | 1 cut(s) | 265 |
| BseNI | ACTGG | 1 cut(s) | 666 |
| Bsh1236I | CGCG | 1 cut(s) | 450 |
| BshFI | GGCC | 2 cut(s) | 201, 617 |
| BsiSI | CCGG | 1 cut(s) | 182 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 185, 346, 661 |
| BsmI | GAATGC | 1 cut(s) | 190 |
| BsnI | GGCC | 2 cut(s) | 201, 617 |
| Bsp143I | GATC | 3 cut(s) | 349, 513, 669 |
| BspACI | CCGC | 3 cut(s) | 329, 450, 614 |
| BspANI | GGCC | 2 cut(s) | 201, 617 |
| BspFNI | CGCG | 1 cut(s) | 450 |
| BspLI | GGNNCC | 1 cut(s) | 666 |
| BspPI | GGATC | 1 cut(s) | 357 |
| BsrDI | GCAATG | 1 cut(s) | 265 |
| BsrI | ACTGG | 1 cut(s) | 666 |
| BssECI | CCNNGG | 2 cut(s) | 299, 395 |
| BssMI | GATC | 3 cut(s) | 349, 513, 669 |
| BssT1I | CCWWGG | 1 cut(s) | 395 |
| Bst2UI | CCWGG | 1 cut(s) | 301 |
| Bst4CI | ACNGT | 2 cut(s) | 470, 588 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 12 |
| BstDEI | CTNAG | 3 cut(s) | 147, 255, 566 |
| BstF5I | GGATG | 2 cut(s) | 250, 286 |
| BstFNI | CGCG | 1 cut(s) | 450 |
| BstKTI | GATC | 3 cut(s) | 352, 516, 672 |
| BstMBI | GATC | 3 cut(s) | 349, 513, 669 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 12 |
| BstNI | CCWGG | 1 cut(s) | 301 |
| BstNSI | RCATGY | 1 cut(s) | 325 |
| BstSCI | CCNGG | 1 cut(s) | 299 |
| BstUI | CGCG | 1 cut(s) | 450 |
| BstX2I | RGATCY | 1 cut(s) | 349 |
| BstYI | RGATCY | 1 cut(s) | 349 |
| BsuI | GTATCC | 1 cut(s) | 118 |
| BsuRI | GGCC | 2 cut(s) | 201, 617 |
| BtsCI | GGATG | 2 cut(s) | 250, 286 |
| Cfr13I | GGNCC | 2 cut(s) | 665, 676 |
| Csp6I | GTAC | 1 cut(s) | 570 |
| CviAII | CATG | 3 cut(s) | 322, 511, 673 |
| CviJI | RGCY | 9 cut(s) | 30, 45, 201, 246, 304, 453, 565, 617, 724 |
| CviKI_1 | RGCY | 9 cut(s) | 30, 45, 201, 246, 304, 453, 565, 617, 724 |
| CviQI | GTAC | 1 cut(s) | 570 |
| DdeI | CTNAG | 3 cut(s) | 147, 255, 566 |
| DpnI | GATC | 3 cut(s) | 351, 515, 671 |
| DpnII | GATC | 3 cut(s) | 349, 513, 669 |
| DraI | TTTAAA | 1 cut(s) | 729 |
| Eco130I | CCWWGG | 1 cut(s) | 395 |
| Eco47I | GGWCC | 2 cut(s) | 665, 676 |
| EcoRII | CCWGG | 1 cut(s) | 299 |
| EcoT14I | CCWWGG | 1 cut(s) | 395 |
| ErhI | CCWWGG | 1 cut(s) | 395 |
| FaeI | CATG | 3 cut(s) | 325, 514, 676 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 708 |
| FatI | CATG | 3 cut(s) | 321, 510, 672 |
| Fnu4HI | GCNGC | 2 cut(s) | 451, 615 |
| FokI | GGATG | 2 cut(s) | 237, 293 |
| Fsp4HI | GCNGC | 2 cut(s) | 451, 615 |
| FspBI | CTAG | 2 cut(s) | 506, 710 |
| GluI | GCNGC | 2 cut(s) | 451, 615 |
| HaeIII | GGCC | 2 cut(s) | 201, 617 |
| HapII | CCGG | 1 cut(s) | 182 |
| Hin1II | CATG | 3 cut(s) | 325, 514, 676 |
| HincII | GTYRAC | 1 cut(s) | 466 |
| HindII | GTYRAC | 1 cut(s) | 466 |
| HindIII | AAGCTT | 1 cut(s) | 722 |
| HpaII | CCGG | 1 cut(s) | 182 |
| HphI | GGTGA | 1 cut(s) | 422 |
| Hpy166II | GTNNAC | 3 cut(s) | 35, 466, 584 |
| Hpy188I | TCNGA | 3 cut(s) | 71, 223, 669 |
| Hpy188III | TCNNGA | 3 cut(s) | 36, 278, 389 |
| Hpy8I | GTNNAC | 3 cut(s) | 35, 466, 584 |
| Hpy99I | CGWCG | 1 cut(s) | 450 |
| HpyAV | CCTTC | 1 cut(s) | 698 |
| HpyCH4III | ACNGT | 2 cut(s) | 470, 588 |
| HpyCH4IV | ACGT | 1 cut(s) | 445 |
| HpyCH4V | TGCA | 4 cut(s) | 270, 376, 423, 645 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 12 |
| HpyF3I | CTNAG | 3 cut(s) | 147, 255, 566 |
| HpySE526I | ACGT | 1 cut(s) | 445 |
| Hsp92II | CATG | 3 cut(s) | 325, 514, 676 |
| Kzo9I | GATC | 3 cut(s) | 349, 513, 669 |
| LweI | GCATC | 1 cut(s) | 15 |
| MaeI | CTAG | 2 cut(s) | 506, 710 |
| MaeII | ACGT | 1 cut(s) | 445 |
| MaeIII | GTNAC | 4 cut(s) | 142, 161, 204, 307 |
| MalI | GATC | 3 cut(s) | 351, 515, 671 |
| MboI | GATC | 3 cut(s) | 349, 513, 669 |
| MflI | RGATCY | 1 cut(s) | 349 |
| MluCI | AATT | 7 cut(s) | 19, 418, 457, 535, 576, 639, 730 |
| MnlI | CCTC | 3 cut(s) | 20, 115, 189 |
| MroXI | GAANNNNTTC | 1 cut(s) | 366 |
| MseI | TTAA | 4 cut(s) | 242, 417, 695, 728 |
| MslI | CAYNNNNRTG | 1 cut(s) | 195 |
| MspI | CCGG | 1 cut(s) | 182 |
| MspR9I | CCNGG | 1 cut(s) | 301 |
| Mva1269I | GAATGC | 1 cut(s) | 190 |
| MvaI | CCWGG | 1 cut(s) | 301 |
| MvnI | CGCG | 1 cut(s) | 450 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 12 |
| NdeII | GATC | 3 cut(s) | 349, 513, 669 |
| NlaIII | CATG | 3 cut(s) | 325, 514, 676 |
| NlaIV | GGNNCC | 1 cut(s) | 666 |
| NmuCI | GTSAC | 1 cut(s) | 307 |
| NspI | RCATGY | 1 cut(s) | 325 |
| PciI | ACATGT | 1 cut(s) | 321 |
| PctI | GAATGC | 1 cut(s) | 190 |
| PdmI | GAANNNNTTC | 1 cut(s) | 366 |
| PkrI | GCNGC | 2 cut(s) | 452, 616 |
| PscI | ACATGT | 1 cut(s) | 321 |
| Psp6I | CCWGG | 1 cut(s) | 299 |
| PspGI | CCWGG | 1 cut(s) | 299 |
| PspN4I | GGNNCC | 1 cut(s) | 666 |
| PspPI | GGNCC | 2 cut(s) | 665, 676 |
| PsuI | RGATCY | 1 cut(s) | 349 |
| RsaI | GTAC | 1 cut(s) | 571 |
| RsaNI | GTAC | 1 cut(s) | 570 |
| RseI | CAYNNNNRTG | 1 cut(s) | 195 |
| SaqAI | TTAA | 4 cut(s) | 242, 417, 695, 728 |
| SatI | GCNGC | 2 cut(s) | 451, 615 |
| Sau3AI | GATC | 3 cut(s) | 349, 513, 669 |
| Sau96I | GGNCC | 2 cut(s) | 665, 676 |
| ScaI | AGTACT | 1 cut(s) | 571 |
| ScrFI | CCNGG | 1 cut(s) | 301 |
| SfaNI | GCATC | 1 cut(s) | 15 |
| SinI | GGWCC | 2 cut(s) | 665, 676 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 195 |
| SmlI | CTYRAG | 1 cut(s) | 387 |
| SmoI | CTYRAG | 1 cut(s) | 387 |
| Sse9I | AATT | 7 cut(s) | 19, 418, 457, 535, 576, 639, 730 |
| SsiI | CCGC | 3 cut(s) | 329, 450, 614 |
| SspMI | CTAG | 2 cut(s) | 506, 710 |
| StyD4I | CCNGG | 1 cut(s) | 299 |
| StyI | CCWWGG | 1 cut(s) | 395 |
| TaaI | ACNGT | 2 cut(s) | 470, 588 |
| TaiI | ACGT | 1 cut(s) | 448 |
| TaqI | TCGA | 3 cut(s) | 25, 290, 574 |
| TasI | AATT | 7 cut(s) | 19, 418, 457, 535, 576, 639, 730 |
| TatI | WGTACW | 1 cut(s) | 569 |
| TauI | GCSGC | 2 cut(s) | 453, 617 |
| Tru1I | TTAA | 4 cut(s) | 242, 417, 695, 728 |
| Tru9I | TTAA | 4 cut(s) | 242, 417, 695, 728 |
| TseFI | GTSAC | 1 cut(s) | 307 |
| Tsp45I | GTSAC | 1 cut(s) | 307 |
| TspDTI | ATGAA | 3 cut(s) | 254, 359, 375 |
| VpaK11BI | GGWCC | 2 cut(s) | 665, 676 |
| XapI | RAATTY | 2 cut(s) | 457, 576 |
| XceI | RCATGY | 1 cut(s) | 325 |
| XmnI | GAANNNNTTC | 1 cut(s) | 366 |
| XspI | CTAG | 2 cut(s) | 506, 710 |
| ZrmI | AGTACT | 1 cut(s) | 571 |